Nucleic Acid Standards
Sugar and Phosphate Constituents
Table 1: References for Mononucleoside and Mononucleotide Structures
used in Anke Gelbin, Bohdan Schneider, Lester Clowney, Shu-Hsin Hsieh, Wilma K. Olson, and Helen M. Berman. "Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents. (1996) J. Am. Chem. Soc. 118, 519-529.
-------------------------------------------------------------------------- CSD ID Compound Reference -------------------------------------------------------------------------- fikhai 3',5'-Di-O-acetyl-2'-deoxyadenosine Koole, L. H., et al. Can. J. Chem., 1987, 65, 326 fikhai01 3',5'-Di-O-acetyl-2'-deoxyadenosine Low, J. N., et al. Acta Cryst., 1988, C44, 2202 foylua 3'-O-acetyl-2'-deoxyadenosine Low, J. N., et al. Acta Cryst., 1987, C43, 2184 fuxbij 3'-Acetyloxy-2'-deoxy-5-methoxymethyl-uridine Quail, J. W., et al. Acta Cryst., 1988, C44, 150 gexxiq 3'-O-acetyl-2'-deoxythymidine Eccleston, R. S., et al. Acta Cryst., 1988, C44, 1424 gexxiq01 3'-O-acetyl-2'-deoxythymidine Schouten, A., et al. Acta Cryst., 1991, C47, 1320 gidtes N-4-(((Methoxycarbonyl)amino)carbonyl)-3',5'-di-O-acetyl-2'- deoxycytidine Kumar, S., et al. J. Org. Chem., 1988, 53, 3959 jafhih 3',5'-Di-O-acetyl-2'-deoxy guanosine Koole, L. H., et al. Can. J. Chem., 1988, 66, 2634 acurid 5-Acetyl-2'-deoxyuridine Barr, P. J., et al. Tetrahedron,1980, 36, 1269 boxgie Disodium 2'-deoxycytidine-5'-phosphate heptahydrate Pandit, J., et al. Acta Cryst., 1983, C39, 342 cezbis 2'-Deoxyadenosine Sato, T., et al. Acta Cryst., 1984, C40, 880 cezfoc Calcium 2'-deoxythymidine-5'-phosphate dihydrate Sato, T., et al. Acta Cryst., 1984, C40, 736 cezmez Calcium 2'-deoxyadenosine-5'-phosphate pentahydrate Sato, T., et al. Acta Cryst., 1984, C40, 738 dadpnh10 Sodium 2'-deoxyadenosine-5'-phosphate hexahydrate Reddy, B. S., et al. Acta Cryst.,1975, B31, 19 defpot N-6-methyl-2'-deoxyadenosine Sato, T., et al. Acta Cryst., 1985, C41, 1624 docypo 2'-Deoxycytidine-5'-phosphate monohydrate Viswamitra, M. A., et al. J. Am. Chem. Soc., 1971, 93, 4565 docypo02 2'-Deoxycytidine-5'-phosphate monohydrate Buneva, V. N., et al. Bioorg. Khim., 1977, 3, 733 docypo03 2'-Deoxycytidine-5'-phosphate monohydrate Pearlman, D. A., et al. Biopolymers, 1985, 24, 327 docytc 2'-Deoxycytidine hydrochloride Subramanian, E., et al. Acta Cryst., 1970, B26, 303 doxadm 2'-Deoxyadenosine monohydrate Watson, D. G., et al. Acta Cryst., 1965, 19, 111 duhhuj 5-Methoxymethyl-2'-deoxyuridine El-Kabbani, O. A. L., et al. Nucleosides and Nucleotides, 1986, 5, 95 dumtou (5S,6S)-cis(-)-6-ethylamino-5-hydroxy-5-methyl-5,6-dihydro-2'-deoxythymidine Harayama, T., et al. J. Chem. Soc., Chem. Comm., 1986, 146, 182 dxcytd 2'-Deoxycytidine Young, D. W., et al. Acta Cryst.,1975, B31, 961 etyxur 5-Ethynyl-2'-deoxyuridine Barr, P. J., et al. Acta Cryst., 1978, B34, 2799 gebtem 5'-Acetyl-2'-deoxythymidine Sato, T., et al. Acta Cryst., 1988, C44, 691 gergal 5-Methyl-2'-deoxycytidine Sato, T., et al. Acta Cryst., 1988, C44, 870 geycao (5S,6S)-cis(+)-6-ethylamino-5-hydroxy-5,6-dihydro-2'-deoxythymidine Harayama, T., et al. J. Chem. Soc., Perkin Trans.1, 1988, 255, 207 geyces (5S,6S)-cis(+)-6-anilino-5-hydroxy-5,6-dihydro-2'-deoxythymidine Harayama, T., et al. J. Chem. Soc., Perkin Trans.1, 1988, 255, 207 gidtiw N-4-(Ureidocarbonyl)-2'-deoxycytidine Kumar, S., et al. J. Org. Chem., 1988, 53, 3959 gojwor N-6-(4-Nitrobenzyl)-2'-deoxyadenosine methanol solvate Quail, J. W., et al. Nucleosides and Nucleotides, 1987, 6, 877 hmdour 5-Hydroxymethyl-2'-deoxyuridine Birnbaum, G. I., et al. J. Am. Chem. Soc.,1980, 102, 423 ipdxur 5-Isopropyl-2'-deoxyuridine Czugler, M., et al. Acta Cryst., 1979, B35, 1626 jappev 5-Methyl-deoxycytidine 5'-phosphate dihydrate Lalitha, H. N., et al. Acta Cryst., 1989, C45, 1652 jibdih 2'-Deoxycytidinium dihydrogenphosphate Jaskolski, M., et al. Acta Cryt., 1991, C47, 153 jubvil 1-(2'-Deoxy-alpha-D-ribofuranosyl)-6,7-dimethyl-lumazine Cao, X., et al. Helv. Chim. Acta, 1992, 75, 1267 jubvor 1-(2'-Deoxy-beta-D-ribofuranosyl)-6,7-dimethyl-lumazine Cao, X., et al. Helv. Chim. Acta, 1992, 75, 647 keclot 8-Amino-3,10-dihydro-10-oxo-3-(beta-D-2-deox-ribofuranosyl)-h-1,3,5- triazino(1,2-a)purine Kumar, S., et al. J. Heterocycles, 1988, 27, 2891 medour 6-Methyl-2'-deoxyuridine Birnbaum, G. I., et al. J. Am. Chem. Soc.,1980, 102, 5586 pryurd10 5-(2-Propynyloxy)-deoxyuridine King, G. S. D., et al. J. Chem. Res., 1982, 25, 722 sdgunp Disodium 2'-deoxyguanosine-5'-phosphate tetrahydrate Young, D. W., et al. Acta Cryst., 1974, B30, 2012 sifgap 5-Methoxymethyl-N-4-methyl-2'-deoxycytidine Jia, Z., et al. Acta Cryst., 1990, C46, 2182 thydin 2'-Deoxythymidine Young, D. W., et al. Acta Cryst., 1969, B25, 1423 vdurid 5-Vinyl-2'-deoxyuridine Hamor, T. A., et al. Acta Cryst., 1978, B34, 1627 vexdor 5-Methoxymethyl-2'-deoxycytidine Jia, Z., et al. Acta Cryst., 1990, C46, 2182 acados 3'-O-acetyl-adenosine Rao, S. T., et al. J. Am. Chem. Soc., 1970, 92, 4963 adposd Adenosine-3'-phosphate dihydrate Sundaralingam, M., et al. Acta Cryst., 1966, 21, 495 cytiac Cytidine 3'-phosphate Sundaralingam, M., et al. J. Mol. Biol., 1965, 13, 914 cytiac01 Cytidine-3'-phosphate Bugg, C. E., et al. J. Mol. Biol., 1967, 25, 67 daurid01 3',5'-Diacetyluridine DeGraaff, R. A. G., et al. Acta Cryst., 1977, B33, 2459 suridp Disodium uridine-3'-phosphate tetrahydrate Viswamitra, M. A., et al. Acta Cryst., 1972, B28, 1108 uridmp10 Uridine-3'-phosphate Srikrishnan, T., et al. J. Am. Chem. Soc., 1979, 101, 3739 adenos01 Adenosine Srikrishnan, T., et al. J. Am. Chem. Soc., 1979, 101, 3739 adenos10 Adenosine Lai, T. F., et al. Acta Cryst., 1972, B28, 1982 admopm Adenosine-5'-O-methylphosphate Hoogendorp, J. D., et al. Acta Cryst., 1978, B34, 3662 admpot10 Adenosine-5'-methylphosphonate hemihydrate Barnes, C. L., et al. Acta Cryst., 1982, B38, 812 adoshc Adenosine hydrochloride Shikata, K., et al. Acta Cryst., 1973, B29, 31 adposm Adenosine-5'-phosphate monohydrate Kraut, J., et al. Acta Cryst., 1963, 16, 79 adposm01 Adenosine-5'-phosphate Neidle, S., et al. Acta Cryst., 1976, B32, 1850 berhah Kinetin ribonucleoside sesquihydrate Walker, R., et al. Cryst. Struct. Commun., 1982, 11, 399 beurid10 Uridine Green, E. A., et al. Acta Cryst., 1975, B31, 102 bguaos10 8-(8-Guanosyl)-guanosine tetrahydrate Bose, S. N., et al. J. Chem. Soc., Perkin Trans.2, 1979, 119, 188 bimfim10 1,N-6-ethenoadenosine hydrochloride Jaskolski, M. J., et al. J. Cryst. Spectrosc., 1984, 14, 45 caxwih 7-Methylguanosine7-methylguanosine iodide trihydrate Yamagata, Y., et al. Nucleic Acids Res., 1983, 11, 6475 cbmurd 5-Carbamoylmethyl-uridine Berman, H. M., et al. Nucleic Acids Res., 1978, 5, 893 cekluz Disodium uridine diphosphoglucose dihydrate Sugawara, Y., et al. Acta Cryst., 1984, C40, 389 citxos10 Uridine-6-thiocarboxamide Cody, V., et al. Nucleosides and Nucleotides, 1985, 4, 587 coczid Adenosine-5'-O-diethylphosphate Brennan, R. G., et al. J. Am. Chem. Soc., 1984, 106, 5671 cupyuh Cytidine-5'-O-dimethylphosphate Brennan, R. G., et al. Nucleic Acids Res., 1984, 12, 6813 cxmurd 5-Carboxymethyl-uridine Berman, H. M., et al. Nucleic Acids Res., 1978, 5, 893 cyticl Cytidinium chloride Mosset, A., et al. Acta Cryst., 1979, B35, 1908 cytidi01 Cytidine Ward, D. L., et al. Acta Cryst., 1993, C49, 1789 cytidi10 Cytidine Furberg, S., et al. Acta Cryst., 1965, 18, 313 cytidn Cytidinium nitrate Guy, J. J., et al. Acta Cryst., 1976, B32, 2909 demxey 8-Methylguanosine trihydrate Hamada, K., et al. Acta Cryst., 1985, C41, 1486 dmguan10 N-2-dimethylguanosine Brennan, T., et al. J. Am. Chem. Soc., 1972, 94, 8548 dmurid 5-Dimethylamino-uridine Egert, E., et al. Acta Cryst., 1979, B35, 920 erfimp 7-Ethyl-3-beta-D-ribofuranosylimidazo (2,1-i)purine chloride monohydrate Wang, A. H.-J., et al. J. Am. Chem. Soc., 1974, 96, 1205 fucwij N-6-didehydro-1,6-dihydro-1-methyladenosine trihydrate Yamagata, Y., et al. Acta Cryst., 1987, C43, 2117 gicmou N-4-aminocytidine hemihydrate Kashino, S., et al. Acta Cryst., 1988, C44, 1454 guanph01 Guanosine-5'-phosphate trihydrate Emerson, J., et al. Acta Cryst.,1980, B36, 510 guansh10 Guanosine dihydrate Thewalt, U., et al. Acta Cryst., 1970, B26, 1089 guopna10 Disodium guanosine-5'-phosphate heptahydrate Barnes, C. L., et al. Acta Cryst., 1982, B38, 812 guopna11 Disodium guanosine-5'-phosphate heptahydrate Katti, S. K., et al. Acta Cryst., 1981, B37, 1825 guosbh Guanosine hydrobromide hemihydrate Tougard, P., et al. Acta Cryst., 1973, B30, 214 hxurid 5-Hydroxyuridine Thewalt, U., et al. Acta Cryst., 1973, B29, 1393 jawjia 7-Methyl-8-oxo-7,8-dihydroguanosine monohydrate Larson, S. B., et al. Acta Cryst., 1989, C45, 1979 jigcux 2-sulfamoyladenosine Swaminathan, P., et al. Acta Cryst.,1980, B36, 2590 kadphd02 Potassium adenosine-5'-diphosphate dihydrate Swaminathan, P., et al. Acta Cryst.,1980, B36, 2590 kehzay 2-Amino-7-methyl-9-(beta-D-ribofuranosyl)-8(9h)-thioxopurin- 6(1h)-one monohydrate Larson, S. B., et al. Acta Cryst., 1990, C46, 506 kivhom 3,N-4-ethenocytidinium dihydrogen-phosphate Gilski, M., et al. Acta Cryst., 1991, C47, 1460 kurdpi Dipotassium uridine-5'-phosphate trihydrate Viswamitra, M. A., et al. Acta Cryst., 1979, B35, 1089 leuaur10 5-(N-(l-leucyl)amino)uridine hydrate Narayanan, P., et al. Acta Cryst., 1977, B33, 2047 meurid 5-Methyluridine hemihydrate Hunt, D. J., et al. Acta Cryst., 1969, B25, 2144 meyrid 6-Methyluridine Suck, D., et al. J. Amer. Chem. Soc., 1972, 94, 6520 mguosm N-2-methylguanosine monohydrate DeGraaff, R. A. G., et al. Acta Cryst., 1978, B34, 3012 mguosm01 N-2-methylguanosine monohydrate Ginell, S. L., et al. Biochem. Biophys. Res. Com., 1978, 84, 886 mxurid01 5-Methoxyuridine Birnbaum, G. I., et al. Can. J. Chem., 1983, 61, 2299 palaur10 5-(N-(l-phenylalanyl)amino)uridine Berman, H. M., et al. Biochemistry, 1973, 9, 1809 pctrib10 N-6-(N-threonylcarbonyl)adenosine Parthasarathy, R., et al. Biochemistry, 1977, 16, 4999 pucglr10 N-6-(N-glycylcarbonyl)adenosine Parthasarathy, R., et al. Biochemistry, 1977, 16, 4999 sekxip10 7-Methylguanosine-5'-phosphate trihydrate Ishida, T., et al. J. Chem. Soc., Perkin Trans.1, 1991, 184, 207 selzis 3-(8-Xanthosyl)xanthine Ji, X., et al. J. Org. Chem., 1990, 55, 1291 suromm Sodium uridine-5'-O-methylphosphate methanol solvate Hoogendorp, J. D., et al. Acta Cryst., 1978, B34, 2724 taljar 5-Methylcytidine Padmaja, N., et al. Acta Cryst., 1991, C47, 1445 toaden 8-Thioxo-adenosine monohydrate Mizuno, H., et al. Acta Cryst.,1980, B36, 902 uroame Uridine-5-oxyacetic acid methyl ester monohydrate Morikawa, K., et al. Acta Cryst.,1975, B31, 1004 vuymad Cytidinium dihydrogenphosphate Jaskolski, M., et al. Acta Cryst., 1989, C45, 85 xantos Xanthosine dihydrate Koyama, G., et al. Acta Cryst., 1976, B32, 969