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Nucleic Acid Standards

Sugar and Phosphate Constituents

Table 1: References for Mononucleoside and Mononucleotide Structures

used in Anke Gelbin, Bohdan Schneider, Lester Clowney, Shu-Hsin Hsieh, Wilma K. Olson, and Helen M. Berman. "Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents. (1996) J. Am. Chem. Soc. 118, 519-529.


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CSD ID     Compound                                 

           Reference

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fikhai     3',5'-Di-O-acetyl-2'-deoxyadenosine     

           Koole, L. H., et al.

           Can. J. Chem., 1987, 65, 326

fikhai01   3',5'-Di-O-acetyl-2'-deoxyadenosine     

           Low, J. N., et al.

           Acta Cryst., 1988, C44, 2202

foylua     3'-O-acetyl-2'-deoxyadenosine            

           Low, J. N., et al.

           Acta Cryst., 1987, C43, 2184

fuxbij     3'-Acetyloxy-2'-deoxy-5-methoxymethyl-uridine   

           Quail, J. W., et al.

           Acta Cryst., 1988, C44, 150

gexxiq     3'-O-acetyl-2'-deoxythymidine            

           Eccleston, R. S., et al.

           Acta Cryst., 1988, C44, 1424

gexxiq01   3'-O-acetyl-2'-deoxythymidine            

           Schouten, A., et al.

           Acta Cryst., 1991, C47, 1320

gidtes     N-4-(((Methoxycarbonyl)amino)carbonyl)-3',5'-di-O-acetyl-2'-

           deoxycytidine  

           Kumar, S., et al.

           J. Org. Chem., 1988, 53, 3959

jafhih     3',5'-Di-O-acetyl-2'-deoxy guanosine     

           Koole, L. H., et al.

           Can. J. Chem., 1988, 66, 2634

acurid     5-Acetyl-2'-deoxyuridine                 

           Barr, P. J., et al.

           Tetrahedron,1980, 36, 1269

boxgie     Disodium 2'-deoxycytidine-5'-phosphate heptahydrate  

           Pandit, J., et al.

           Acta Cryst., 1983, C39, 342

cezbis     2'-Deoxyadenosine                        

           Sato, T., et al.

           Acta Cryst., 1984, C40, 880

cezfoc     Calcium 2'-deoxythymidine-5'-phosphate dihydrate  

           Sato, T., et al.

           Acta Cryst., 1984, C40, 736

cezmez     Calcium 2'-deoxyadenosine-5'-phosphate pentahydrate  

           Sato, T., et al.

           Acta Cryst., 1984, C40, 738

dadpnh10   Sodium 2'-deoxyadenosine-5'-phosphate hexahydrate    

           Reddy, B. S., et al.

           Acta Cryst.,1975, B31, 19

defpot     N-6-methyl-2'-deoxyadenosine             

           Sato, T., et al.

           Acta Cryst., 1985, C41, 1624

docypo     2'-Deoxycytidine-5'-phosphate monohydrate           

           Viswamitra, M. A., et al.

           J. Am. Chem. Soc., 1971, 93, 4565

docypo02   2'-Deoxycytidine-5'-phosphate monohydrate           

           Buneva, V. N., et al.

           Bioorg. Khim., 1977, 3, 733

docypo03   2'-Deoxycytidine-5'-phosphate monohydrate            

           Pearlman, D. A., et al.

           Biopolymers, 1985, 24, 327

docytc     2'-Deoxycytidine hydrochloride           

           Subramanian, E., et al.

           Acta Cryst., 1970, B26, 303

doxadm     2'-Deoxyadenosine monohydrate            

           Watson, D. G., et al.

           Acta Cryst., 1965, 19, 111

duhhuj     5-Methoxymethyl-2'-deoxyuridine          

           El-Kabbani, O. A. L., et al.

           Nucleosides and Nucleotides, 1986, 5, 95 

dumtou     (5S,6S)-cis(-)-6-ethylamino-5-hydroxy-5-methyl-5,6-dihydro-2'-deoxythymidine   

           Harayama, T., et al.

           J. Chem. Soc., Chem. Comm., 1986, 146, 182

dxcytd     2'-Deoxycytidine                         

           Young, D. W., et al.

           Acta Cryst.,1975, B31, 961

etyxur     5-Ethynyl-2'-deoxyuridine                

           Barr, P. J., et al.

           Acta Cryst., 1978, B34, 2799

gebtem     5'-Acetyl-2'-deoxythymidine              

           Sato, T., et al.

           Acta Cryst., 1988, C44, 691

gergal     5-Methyl-2'-deoxycytidine                

           Sato, T., et al.

           Acta Cryst., 1988, C44, 870

geycao     (5S,6S)-cis(+)-6-ethylamino-5-hydroxy-5,6-dihydro-2'-deoxythymidine            

           Harayama, T., et al.

           J. Chem. Soc., Perkin Trans.1, 1988, 255, 207

geyces     (5S,6S)-cis(+)-6-anilino-5-hydroxy-5,6-dihydro-2'-deoxythymidine                

           Harayama, T., et al.

           J. Chem. Soc., Perkin Trans.1, 1988, 255, 207 

gidtiw     N-4-(Ureidocarbonyl)-2'-deoxycytidine    

           Kumar, S., et al.

           J. Org. Chem., 1988, 53, 3959

gojwor     N-6-(4-Nitrobenzyl)-2'-deoxyadenosine methanol solvate   

           Quail, J. W., et al.

           Nucleosides and Nucleotides, 1987, 6, 877  

hmdour     5-Hydroxymethyl-2'-deoxyuridine          

           Birnbaum, G. I., et al.

           J. Am. Chem. Soc.,1980, 102, 423

ipdxur     5-Isopropyl-2'-deoxyuridine              

           Czugler, M., et al.

           Acta Cryst., 1979, B35, 1626

jappev     5-Methyl-deoxycytidine 5'-phosphate dihydrate      

           Lalitha, H. N., et al.

           Acta Cryst., 1989, C45, 1652

jibdih     2'-Deoxycytidinium dihydrogenphosphate   

           Jaskolski, M., et al.

           Acta Cryt., 1991, C47, 153

jubvil     1-(2'-Deoxy-alpha-D-ribofuranosyl)-6,7-dimethyl-lumazine  

           Cao, X., et al.

           Helv. Chim. Acta, 1992, 75, 1267

jubvor     1-(2'-Deoxy-beta-D-ribofuranosyl)-6,7-dimethyl-lumazine    

           Cao, X., et al.

           Helv. Chim. Acta, 1992, 75, 647 

keclot     8-Amino-3,10-dihydro-10-oxo-3-(beta-D-2-deox-ribofuranosyl)-h-1,3,5-

           triazino(1,2-a)purine    

           Kumar, S., et al.

           J. Heterocycles, 1988, 27, 2891 

medour     6-Methyl-2'-deoxyuridine                 

           Birnbaum, G. I., et al.

           J. Am. Chem. Soc.,1980, 102, 5586

pryurd10   5-(2-Propynyloxy)-deoxyuridine           

           King, G. S. D., et al.

           J. Chem. Res., 1982, 25, 722

sdgunp     Disodium 2'-deoxyguanosine-5'-phosphate tetrahydrate 

           Young, D. W., et al.

           Acta Cryst., 1974, B30, 2012

sifgap     5-Methoxymethyl-N-4-methyl-2'-deoxycytidine           

           Jia, Z., et al.

           Acta Cryst., 1990, C46, 2182

thydin     2'-Deoxythymidine                        

           Young, D. W., et al.

           Acta Cryst., 1969, B25, 1423

vdurid     5-Vinyl-2'-deoxyuridine                  

           Hamor, T. A., et al.

           Acta Cryst., 1978, B34, 1627

vexdor     5-Methoxymethyl-2'-deoxycytidine         

           Jia, Z., et al.

           Acta Cryst., 1990, C46, 2182

acados     3'-O-acetyl-adenosine                    

           Rao, S. T., et al.

           J. Am. Chem. Soc., 1970, 92, 4963

adposd     Adenosine-3'-phosphate dihydrate         

           Sundaralingam, M., et al.

           Acta Cryst., 1966, 21, 495

cytiac     Cytidine 3'-phosphate                    

           Sundaralingam, M., et al.

           J. Mol. Biol., 1965, 13, 914

cytiac01   Cytidine-3'-phosphate                    

           Bugg, C. E., et al.

           J. Mol. Biol., 1967, 25, 67

daurid01   3',5'-Diacetyluridine                    

           DeGraaff, R. A. G., et al.

           Acta Cryst., 1977, B33, 2459

suridp     Disodium uridine-3'-phosphate tetrahydrate           

           Viswamitra, M. A., et al.

           Acta Cryst., 1972, B28, 1108

uridmp10   Uridine-3'-phosphate                     

           Srikrishnan, T., et al.

           J. Am. Chem. Soc., 1979, 101, 3739

adenos01   Adenosine                                

           Srikrishnan, T., et al.

           J. Am. Chem. Soc., 1979, 101, 3739

adenos10   Adenosine                                

           Lai, T. F., et al.

           Acta Cryst., 1972, B28, 1982

admopm     Adenosine-5'-O-methylphosphate           

           Hoogendorp, J. D., et al.

           Acta Cryst., 1978, B34, 3662

admpot10   Adenosine-5'-methylphosphonate hemihydrate          

           Barnes, C. L., et al.

           Acta Cryst., 1982, B38, 812

adoshc     Adenosine hydrochloride                  

           Shikata, K., et al.

           Acta Cryst., 1973, B29, 31

adposm     Adenosine-5'-phosphate monohydrate       

           Kraut, J., et al.

           Acta Cryst., 1963, 16, 79

adposm01   Adenosine-5'-phosphate                   

           Neidle, S., et al.

           Acta Cryst., 1976, B32, 1850

berhah     Kinetin ribonucleoside sesquihydrate     

           Walker, R., et al.

           Cryst. Struct. Commun., 1982, 11, 399

beurid10   Uridine                                  

           Green, E. A., et al.

           Acta Cryst., 1975, B31, 102

bguaos10   8-(8-Guanosyl)-guanosine tetrahydrate    

           Bose, S. N., et al.

           J. Chem. Soc., Perkin Trans.2, 1979, 119, 188

bimfim10   1,N-6-ethenoadenosine hydrochloride      

           Jaskolski, M. J., et al.

           J. Cryst. Spectrosc., 1984, 14, 45

caxwih     7-Methylguanosine7-methylguanosine iodide trihydrate      

           Yamagata, Y., et al.

           Nucleic Acids Res., 1983, 11, 6475

cbmurd     5-Carbamoylmethyl-uridine                

           Berman, H. M., et al.

           Nucleic Acids Res., 1978, 5, 893

cekluz     Disodium uridine diphosphoglucose dihydrate        

           Sugawara, Y., et al.

           Acta Cryst., 1984, C40, 389

citxos10   Uridine-6-thiocarboxamide                

           Cody, V., et al.

           Nucleosides and Nucleotides, 1985, 4, 587

coczid     Adenosine-5'-O-diethylphosphate          

           Brennan, R. G., et al.

           J. Am. Chem. Soc., 1984, 106, 5671

cupyuh     Cytidine-5'-O-dimethylphosphate          

           Brennan, R. G., et al.

           Nucleic Acids Res., 1984, 12, 6813

cxmurd     5-Carboxymethyl-uridine                  

           Berman, H. M., et al.

           Nucleic Acids Res., 1978, 5, 893

cyticl     Cytidinium chloride                      

           Mosset, A., et al.

           Acta Cryst., 1979, B35, 1908

cytidi01   Cytidine                                 

           Ward, D. L., et al.

           Acta Cryst., 1993, C49, 1789

cytidi10   Cytidine                                 

           Furberg, S., et al.

           Acta Cryst., 1965, 18, 313

cytidn     Cytidinium nitrate                       

           Guy, J. J., et al.

           Acta Cryst., 1976, B32, 2909

demxey     8-Methylguanosine trihydrate             

           Hamada, K., et al.

           Acta Cryst., 1985, C41, 1486

dmguan10   N-2-dimethylguanosine                    

           Brennan, T., et al.

           J. Am. Chem. Soc., 1972, 94, 8548

dmurid     5-Dimethylamino-uridine                  

           Egert, E., et al.

           Acta Cryst., 1979, B35, 920

erfimp     7-Ethyl-3-beta-D-ribofuranosylimidazo (2,1-i)purine chloride 

           monohydrate   

           Wang, A. H.-J., et al.

           J. Am. Chem. Soc., 1974, 96, 1205

fucwij     N-6-didehydro-1,6-dihydro-1-methyladenosine trihydrate             

           Yamagata, Y., et al.

           Acta Cryst., 1987, C43, 2117

gicmou     N-4-aminocytidine hemihydrate            

           Kashino, S., et al.

           Acta Cryst., 1988, C44, 1454

guanph01   Guanosine-5'-phosphate trihydrate        

           Emerson, J., et al.

           Acta Cryst.,1980, B36, 510

guansh10   Guanosine dihydrate                      

           Thewalt, U., et al.

           Acta Cryst., 1970, B26, 1089

guopna10   Disodium guanosine-5'-phosphate heptahydrate         

           Barnes, C. L., et al.

           Acta Cryst., 1982, B38, 812

guopna11   Disodium guanosine-5'-phosphate heptahydrate          

           Katti, S. K., et al.

           Acta Cryst., 1981, B37, 1825

guosbh     Guanosine hydrobromide hemihydrate       

           Tougard, P., et al.

           Acta Cryst., 1973, B30, 214

hxurid     5-Hydroxyuridine                         

           Thewalt, U., et al.

           Acta Cryst., 1973, B29, 1393

jawjia     7-Methyl-8-oxo-7,8-dihydroguanosine monohydrate      

           Larson, S. B., et al.

           Acta Cryst., 1989, C45, 1979

jigcux     2-sulfamoyladenosine                     

           Swaminathan, P., et al.

           Acta Cryst.,1980, B36, 2590

kadphd02   Potassium adenosine-5'-diphosphate dihydrate       

           Swaminathan, P., et al.

           Acta Cryst.,1980, B36, 2590

kehzay     2-Amino-7-methyl-9-(beta-D-ribofuranosyl)-8(9h)-thioxopurin-              

           6(1h)-one monohydrate

           Larson, S. B., et al.

           Acta Cryst., 1990, C46, 506

kivhom     3,N-4-ethenocytidinium dihydrogen-phosphate       

           Gilski, M., et al.

           Acta Cryst., 1991, C47, 1460

kurdpi     Dipotassium uridine-5'-phosphate trihydrate        

           Viswamitra, M. A., et al.

           Acta Cryst., 1979, B35, 1089

leuaur10   5-(N-(l-leucyl)amino)uridine hydrate     

           Narayanan, P., et al.

           Acta Cryst., 1977, B33, 2047

meurid     5-Methyluridine hemihydrate              

           Hunt, D. J., et al.

           Acta Cryst., 1969, B25, 2144

meyrid     6-Methyluridine                          

           Suck, D., et al.

           J. Amer. Chem. Soc., 1972, 94, 6520 

mguosm     N-2-methylguanosine monohydrate          

           DeGraaff, R. A. G., et al.

           Acta Cryst., 1978, B34, 3012

mguosm01   N-2-methylguanosine monohydrate          

           Ginell, S. L., et al.

           Biochem. Biophys. Res. Com., 1978, 84, 886 

mxurid01   5-Methoxyuridine                         

           Birnbaum, G. I., et al.

           Can. J. Chem., 1983, 61, 2299

palaur10   5-(N-(l-phenylalanyl)amino)uridine       

           Berman, H. M., et al.

           Biochemistry, 1973, 9, 1809

pctrib10   N-6-(N-threonylcarbonyl)adenosine        

           Parthasarathy, R., et al.

           Biochemistry, 1977, 16, 4999

pucglr10   N-6-(N-glycylcarbonyl)adenosine          

           Parthasarathy, R., et al.

           Biochemistry, 1977, 16, 4999

sekxip10   7-Methylguanosine-5'-phosphate trihydrate           

           Ishida, T., et al.

           J. Chem. Soc., Perkin Trans.1, 1991, 184, 207 

selzis     3-(8-Xanthosyl)xanthine                  

           Ji, X., et al.

           J. Org. Chem., 1990, 55, 1291

suromm     Sodium uridine-5'-O-methylphosphate methanol solvate      

           Hoogendorp, J. D., et al.

           Acta Cryst., 1978, B34, 2724

taljar     5-Methylcytidine                         

           Padmaja, N., et al.

           Acta Cryst., 1991, C47, 1445

toaden     8-Thioxo-adenosine monohydrate           

           Mizuno, H., et al.

           Acta Cryst.,1980, B36, 902

uroame     Uridine-5-oxyacetic acid methyl ester monohydrate   

           Morikawa, K., et al.

           Acta Cryst.,1975, B31, 1004

vuymad     Cytidinium dihydrogenphosphate           

           Jaskolski, M., et al.

           Acta Cryst., 1989, C45, 85

xantos     Xanthosine dihydrate                     

           Koyama, G., et al.

           Acta Cryst., 1976, B32, 969       

					

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