Nucleic Acid Standards
Sugar and Phosphate Constituents
Table 1: References for Mononucleoside and Mononucleotide Structures
used in Anke Gelbin, Bohdan Schneider, Lester Clowney, Shu-Hsin Hsieh, Wilma K. Olson, and Helen M. Berman. "Geometric Parameters in Nucleic Acids: Sugar and Phosphate Constituents. (1996) J. Am. Chem. Soc. 118, 519-529.
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CSD ID Compound
Reference
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fikhai 3',5'-Di-O-acetyl-2'-deoxyadenosine
Koole, L. H., et al.
Can. J. Chem., 1987, 65, 326
fikhai01 3',5'-Di-O-acetyl-2'-deoxyadenosine
Low, J. N., et al.
Acta Cryst., 1988, C44, 2202
foylua 3'-O-acetyl-2'-deoxyadenosine
Low, J. N., et al.
Acta Cryst., 1987, C43, 2184
fuxbij 3'-Acetyloxy-2'-deoxy-5-methoxymethyl-uridine
Quail, J. W., et al.
Acta Cryst., 1988, C44, 150
gexxiq 3'-O-acetyl-2'-deoxythymidine
Eccleston, R. S., et al.
Acta Cryst., 1988, C44, 1424
gexxiq01 3'-O-acetyl-2'-deoxythymidine
Schouten, A., et al.
Acta Cryst., 1991, C47, 1320
gidtes N-4-(((Methoxycarbonyl)amino)carbonyl)-3',5'-di-O-acetyl-2'-
deoxycytidine
Kumar, S., et al.
J. Org. Chem., 1988, 53, 3959
jafhih 3',5'-Di-O-acetyl-2'-deoxy guanosine
Koole, L. H., et al.
Can. J. Chem., 1988, 66, 2634
acurid 5-Acetyl-2'-deoxyuridine
Barr, P. J., et al.
Tetrahedron,1980, 36, 1269
boxgie Disodium 2'-deoxycytidine-5'-phosphate heptahydrate
Pandit, J., et al.
Acta Cryst., 1983, C39, 342
cezbis 2'-Deoxyadenosine
Sato, T., et al.
Acta Cryst., 1984, C40, 880
cezfoc Calcium 2'-deoxythymidine-5'-phosphate dihydrate
Sato, T., et al.
Acta Cryst., 1984, C40, 736
cezmez Calcium 2'-deoxyadenosine-5'-phosphate pentahydrate
Sato, T., et al.
Acta Cryst., 1984, C40, 738
dadpnh10 Sodium 2'-deoxyadenosine-5'-phosphate hexahydrate
Reddy, B. S., et al.
Acta Cryst.,1975, B31, 19
defpot N-6-methyl-2'-deoxyadenosine
Sato, T., et al.
Acta Cryst., 1985, C41, 1624
docypo 2'-Deoxycytidine-5'-phosphate monohydrate
Viswamitra, M. A., et al.
J. Am. Chem. Soc., 1971, 93, 4565
docypo02 2'-Deoxycytidine-5'-phosphate monohydrate
Buneva, V. N., et al.
Bioorg. Khim., 1977, 3, 733
docypo03 2'-Deoxycytidine-5'-phosphate monohydrate
Pearlman, D. A., et al.
Biopolymers, 1985, 24, 327
docytc 2'-Deoxycytidine hydrochloride
Subramanian, E., et al.
Acta Cryst., 1970, B26, 303
doxadm 2'-Deoxyadenosine monohydrate
Watson, D. G., et al.
Acta Cryst., 1965, 19, 111
duhhuj 5-Methoxymethyl-2'-deoxyuridine
El-Kabbani, O. A. L., et al.
Nucleosides and Nucleotides, 1986, 5, 95
dumtou (5S,6S)-cis(-)-6-ethylamino-5-hydroxy-5-methyl-5,6-dihydro-2'-deoxythymidine
Harayama, T., et al.
J. Chem. Soc., Chem. Comm., 1986, 146, 182
dxcytd 2'-Deoxycytidine
Young, D. W., et al.
Acta Cryst.,1975, B31, 961
etyxur 5-Ethynyl-2'-deoxyuridine
Barr, P. J., et al.
Acta Cryst., 1978, B34, 2799
gebtem 5'-Acetyl-2'-deoxythymidine
Sato, T., et al.
Acta Cryst., 1988, C44, 691
gergal 5-Methyl-2'-deoxycytidine
Sato, T., et al.
Acta Cryst., 1988, C44, 870
geycao (5S,6S)-cis(+)-6-ethylamino-5-hydroxy-5,6-dihydro-2'-deoxythymidine
Harayama, T., et al.
J. Chem. Soc., Perkin Trans.1, 1988, 255, 207
geyces (5S,6S)-cis(+)-6-anilino-5-hydroxy-5,6-dihydro-2'-deoxythymidine
Harayama, T., et al.
J. Chem. Soc., Perkin Trans.1, 1988, 255, 207
gidtiw N-4-(Ureidocarbonyl)-2'-deoxycytidine
Kumar, S., et al.
J. Org. Chem., 1988, 53, 3959
gojwor N-6-(4-Nitrobenzyl)-2'-deoxyadenosine methanol solvate
Quail, J. W., et al.
Nucleosides and Nucleotides, 1987, 6, 877
hmdour 5-Hydroxymethyl-2'-deoxyuridine
Birnbaum, G. I., et al.
J. Am. Chem. Soc.,1980, 102, 423
ipdxur 5-Isopropyl-2'-deoxyuridine
Czugler, M., et al.
Acta Cryst., 1979, B35, 1626
jappev 5-Methyl-deoxycytidine 5'-phosphate dihydrate
Lalitha, H. N., et al.
Acta Cryst., 1989, C45, 1652
jibdih 2'-Deoxycytidinium dihydrogenphosphate
Jaskolski, M., et al.
Acta Cryt., 1991, C47, 153
jubvil 1-(2'-Deoxy-alpha-D-ribofuranosyl)-6,7-dimethyl-lumazine
Cao, X., et al.
Helv. Chim. Acta, 1992, 75, 1267
jubvor 1-(2'-Deoxy-beta-D-ribofuranosyl)-6,7-dimethyl-lumazine
Cao, X., et al.
Helv. Chim. Acta, 1992, 75, 647
keclot 8-Amino-3,10-dihydro-10-oxo-3-(beta-D-2-deox-ribofuranosyl)-h-1,3,5-
triazino(1,2-a)purine
Kumar, S., et al.
J. Heterocycles, 1988, 27, 2891
medour 6-Methyl-2'-deoxyuridine
Birnbaum, G. I., et al.
J. Am. Chem. Soc.,1980, 102, 5586
pryurd10 5-(2-Propynyloxy)-deoxyuridine
King, G. S. D., et al.
J. Chem. Res., 1982, 25, 722
sdgunp Disodium 2'-deoxyguanosine-5'-phosphate tetrahydrate
Young, D. W., et al.
Acta Cryst., 1974, B30, 2012
sifgap 5-Methoxymethyl-N-4-methyl-2'-deoxycytidine
Jia, Z., et al.
Acta Cryst., 1990, C46, 2182
thydin 2'-Deoxythymidine
Young, D. W., et al.
Acta Cryst., 1969, B25, 1423
vdurid 5-Vinyl-2'-deoxyuridine
Hamor, T. A., et al.
Acta Cryst., 1978, B34, 1627
vexdor 5-Methoxymethyl-2'-deoxycytidine
Jia, Z., et al.
Acta Cryst., 1990, C46, 2182
acados 3'-O-acetyl-adenosine
Rao, S. T., et al.
J. Am. Chem. Soc., 1970, 92, 4963
adposd Adenosine-3'-phosphate dihydrate
Sundaralingam, M., et al.
Acta Cryst., 1966, 21, 495
cytiac Cytidine 3'-phosphate
Sundaralingam, M., et al.
J. Mol. Biol., 1965, 13, 914
cytiac01 Cytidine-3'-phosphate
Bugg, C. E., et al.
J. Mol. Biol., 1967, 25, 67
daurid01 3',5'-Diacetyluridine
DeGraaff, R. A. G., et al.
Acta Cryst., 1977, B33, 2459
suridp Disodium uridine-3'-phosphate tetrahydrate
Viswamitra, M. A., et al.
Acta Cryst., 1972, B28, 1108
uridmp10 Uridine-3'-phosphate
Srikrishnan, T., et al.
J. Am. Chem. Soc., 1979, 101, 3739
adenos01 Adenosine
Srikrishnan, T., et al.
J. Am. Chem. Soc., 1979, 101, 3739
adenos10 Adenosine
Lai, T. F., et al.
Acta Cryst., 1972, B28, 1982
admopm Adenosine-5'-O-methylphosphate
Hoogendorp, J. D., et al.
Acta Cryst., 1978, B34, 3662
admpot10 Adenosine-5'-methylphosphonate hemihydrate
Barnes, C. L., et al.
Acta Cryst., 1982, B38, 812
adoshc Adenosine hydrochloride
Shikata, K., et al.
Acta Cryst., 1973, B29, 31
adposm Adenosine-5'-phosphate monohydrate
Kraut, J., et al.
Acta Cryst., 1963, 16, 79
adposm01 Adenosine-5'-phosphate
Neidle, S., et al.
Acta Cryst., 1976, B32, 1850
berhah Kinetin ribonucleoside sesquihydrate
Walker, R., et al.
Cryst. Struct. Commun., 1982, 11, 399
beurid10 Uridine
Green, E. A., et al.
Acta Cryst., 1975, B31, 102
bguaos10 8-(8-Guanosyl)-guanosine tetrahydrate
Bose, S. N., et al.
J. Chem. Soc., Perkin Trans.2, 1979, 119, 188
bimfim10 1,N-6-ethenoadenosine hydrochloride
Jaskolski, M. J., et al.
J. Cryst. Spectrosc., 1984, 14, 45
caxwih 7-Methylguanosine7-methylguanosine iodide trihydrate
Yamagata, Y., et al.
Nucleic Acids Res., 1983, 11, 6475
cbmurd 5-Carbamoylmethyl-uridine
Berman, H. M., et al.
Nucleic Acids Res., 1978, 5, 893
cekluz Disodium uridine diphosphoglucose dihydrate
Sugawara, Y., et al.
Acta Cryst., 1984, C40, 389
citxos10 Uridine-6-thiocarboxamide
Cody, V., et al.
Nucleosides and Nucleotides, 1985, 4, 587
coczid Adenosine-5'-O-diethylphosphate
Brennan, R. G., et al.
J. Am. Chem. Soc., 1984, 106, 5671
cupyuh Cytidine-5'-O-dimethylphosphate
Brennan, R. G., et al.
Nucleic Acids Res., 1984, 12, 6813
cxmurd 5-Carboxymethyl-uridine
Berman, H. M., et al.
Nucleic Acids Res., 1978, 5, 893
cyticl Cytidinium chloride
Mosset, A., et al.
Acta Cryst., 1979, B35, 1908
cytidi01 Cytidine
Ward, D. L., et al.
Acta Cryst., 1993, C49, 1789
cytidi10 Cytidine
Furberg, S., et al.
Acta Cryst., 1965, 18, 313
cytidn Cytidinium nitrate
Guy, J. J., et al.
Acta Cryst., 1976, B32, 2909
demxey 8-Methylguanosine trihydrate
Hamada, K., et al.
Acta Cryst., 1985, C41, 1486
dmguan10 N-2-dimethylguanosine
Brennan, T., et al.
J. Am. Chem. Soc., 1972, 94, 8548
dmurid 5-Dimethylamino-uridine
Egert, E., et al.
Acta Cryst., 1979, B35, 920
erfimp 7-Ethyl-3-beta-D-ribofuranosylimidazo (2,1-i)purine chloride
monohydrate
Wang, A. H.-J., et al.
J. Am. Chem. Soc., 1974, 96, 1205
fucwij N-6-didehydro-1,6-dihydro-1-methyladenosine trihydrate
Yamagata, Y., et al.
Acta Cryst., 1987, C43, 2117
gicmou N-4-aminocytidine hemihydrate
Kashino, S., et al.
Acta Cryst., 1988, C44, 1454
guanph01 Guanosine-5'-phosphate trihydrate
Emerson, J., et al.
Acta Cryst.,1980, B36, 510
guansh10 Guanosine dihydrate
Thewalt, U., et al.
Acta Cryst., 1970, B26, 1089
guopna10 Disodium guanosine-5'-phosphate heptahydrate
Barnes, C. L., et al.
Acta Cryst., 1982, B38, 812
guopna11 Disodium guanosine-5'-phosphate heptahydrate
Katti, S. K., et al.
Acta Cryst., 1981, B37, 1825
guosbh Guanosine hydrobromide hemihydrate
Tougard, P., et al.
Acta Cryst., 1973, B30, 214
hxurid 5-Hydroxyuridine
Thewalt, U., et al.
Acta Cryst., 1973, B29, 1393
jawjia 7-Methyl-8-oxo-7,8-dihydroguanosine monohydrate
Larson, S. B., et al.
Acta Cryst., 1989, C45, 1979
jigcux 2-sulfamoyladenosine
Swaminathan, P., et al.
Acta Cryst.,1980, B36, 2590
kadphd02 Potassium adenosine-5'-diphosphate dihydrate
Swaminathan, P., et al.
Acta Cryst.,1980, B36, 2590
kehzay 2-Amino-7-methyl-9-(beta-D-ribofuranosyl)-8(9h)-thioxopurin-
6(1h)-one monohydrate
Larson, S. B., et al.
Acta Cryst., 1990, C46, 506
kivhom 3,N-4-ethenocytidinium dihydrogen-phosphate
Gilski, M., et al.
Acta Cryst., 1991, C47, 1460
kurdpi Dipotassium uridine-5'-phosphate trihydrate
Viswamitra, M. A., et al.
Acta Cryst., 1979, B35, 1089
leuaur10 5-(N-(l-leucyl)amino)uridine hydrate
Narayanan, P., et al.
Acta Cryst., 1977, B33, 2047
meurid 5-Methyluridine hemihydrate
Hunt, D. J., et al.
Acta Cryst., 1969, B25, 2144
meyrid 6-Methyluridine
Suck, D., et al.
J. Amer. Chem. Soc., 1972, 94, 6520
mguosm N-2-methylguanosine monohydrate
DeGraaff, R. A. G., et al.
Acta Cryst., 1978, B34, 3012
mguosm01 N-2-methylguanosine monohydrate
Ginell, S. L., et al.
Biochem. Biophys. Res. Com., 1978, 84, 886
mxurid01 5-Methoxyuridine
Birnbaum, G. I., et al.
Can. J. Chem., 1983, 61, 2299
palaur10 5-(N-(l-phenylalanyl)amino)uridine
Berman, H. M., et al.
Biochemistry, 1973, 9, 1809
pctrib10 N-6-(N-threonylcarbonyl)adenosine
Parthasarathy, R., et al.
Biochemistry, 1977, 16, 4999
pucglr10 N-6-(N-glycylcarbonyl)adenosine
Parthasarathy, R., et al.
Biochemistry, 1977, 16, 4999
sekxip10 7-Methylguanosine-5'-phosphate trihydrate
Ishida, T., et al.
J. Chem. Soc., Perkin Trans.1, 1991, 184, 207
selzis 3-(8-Xanthosyl)xanthine
Ji, X., et al.
J. Org. Chem., 1990, 55, 1291
suromm Sodium uridine-5'-O-methylphosphate methanol solvate
Hoogendorp, J. D., et al.
Acta Cryst., 1978, B34, 2724
taljar 5-Methylcytidine
Padmaja, N., et al.
Acta Cryst., 1991, C47, 1445
toaden 8-Thioxo-adenosine monohydrate
Mizuno, H., et al.
Acta Cryst.,1980, B36, 902
uroame Uridine-5-oxyacetic acid methyl ester monohydrate
Morikawa, K., et al.
Acta Cryst.,1975, B31, 1004
vuymad Cytidinium dihydrogenphosphate
Jaskolski, M., et al.
Acta Cryst., 1989, C45, 85
xantos Xanthosine dihydrate
Koyama, G., et al.
Acta Cryst., 1976, B32, 969