A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Mar-2019 number of released structures: 10085
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6834  Download results as an excel file       Gallery view

NDB ID:

5ZAD

PDB ID:

5ZAD 

Release:

2019-03-20

Title:

Human topoisomerase II beta in complex with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sun, L.Y., Zhu, L.W., Tang, Y.J.

Citation:

Increasing the distance between two monomers of topoisomerase II beta under the action of antitumor agent 4 beta-sulfur-(benzimidazole) 4'-demethylepipodophyllotoxin.
Sci Rep 8 pp.14949 - 14949 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.54Å R work:0.18R free:0.227

NDB ID:

5ZX2

PDB ID:

5ZX2 

Release:

2019-03-20

Title:

Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma factor sigma H and 7nt RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Li, L., Fang, C., Zhuang, N., Zhang, Y.

Citation:

Structural basis for transcription initiation by bacterial ECF sigma factors
Nat Commun pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.219R free:0.254

NDB ID:

6CPQ

PDB ID:

6CPQ 

Release:

2019-03-20

Title:

Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP

Classification:

Transferase/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.93Å R work:0.19R free:0.238

NDB ID:

6CRH

PDB ID:

6CRH 

Release:

2019-03-20

Title:

Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP

Classification:

Transferase, Lyase/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.327Å R work:0.197R free:0.243

NDB ID:

6IJW

PDB ID:

6IJW 

Release:

2019-03-13

Title:

SOLUTION NMR STRUCTURE OF A DODECAMERIC dsDNA COMPLEXED WITH A NIR FLUORESCENT PROBE QCy-DT

Classification:

DNA

Authors:

Ganguly, S., Basu, G.

Citation:

SOLUTION NMR STRUCTURE OF A DODECAMERIC dsDNA COMPLEXED WITH A NIR FLUORESCENT PROBE QCy-DT
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6QTK

PDB ID:

6QTK 

Release:

2019-03-13

Title:

2.31A structure of gepotidacin with S.aureus DNA gyrase and doubly nicked DNA

Classification:

ISOMERASE

Authors:

Gibson, E.G., Bax, B., Chan, P.F., Osheroff, N.

Citation:

Mechanistic and Structural Basis for the Actions of the Antibacterial Gepotidacin against Staphylococcus aureus Gyrase.
ACS Infect Dis pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.31Å R work:0.162R free:0.203

NDB ID:

6QTP

PDB ID:

6QTP 

Release:

2019-03-13

Title:

2.37A structure of gepotidacin with S.aureus DNA gyrase and uncleaved DNA

Classification:

ISOMERASE

Authors:

Gibson, E.G., Bax, B., Chan, P.F., Osheroff, N.

Citation:

Mechanistic and Structural Basis for the Actions of the Antibacterial Gepotidacin against Staphylococcus aureus Gyrase.
ACS Infect Dis pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.37Å R work:0.182R free:0.223

NDB ID:

6A85

PDB ID:

6A85 

Release:

2019-03-06

Title:

Crystal structure of a novel DNA quadruplex

Classification:

DNA

Authors:

Liu, H.H., Wang, R., Yu, X., Shen, F.S., Lan, W.X., Haruehanroengra, P., Yao, Q.Q., Zhang, J., Chen, Y.Q., Li, S.H., Wu, B.X., Zheng, L.N., Ma, J.B., Lin, J.Z., Cao, C.Y., Li, J.X., Sheng, J., Gan, J.H.

Citation:

High-resolution DNA quadruplex structure containing all the A-, G-, C-, T-tetrads.
Nucleic Acids Res. 46 pp.11627 - 11638 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.136R free:0.168

NDB ID:

6CLY

PDB ID:

6CLY 

Release:

2019-03-06

Title:

Structure of human DNA polymerase beta complexed with 8-ClG as the template base in a 1-nucleotide gapped DNA

Classification:

Transferase, Lyase/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta complexed with 8-ClG as the template base in a 1-nucleotide gapped DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.186Å R work:0.218R free:0.267

NDB ID:

6GTS

PDB ID:

6GTS 

Release:

2019-03-06

Title:

Structure of the AtaT-AtaR complex bound DNA

Classification:

TRANSCRIPTION

Authors:

Jurenas, D., Van Melderen, L., Garcia-Pino, A.

Citation:

Mechanism of regulation and neutralization of the AtaR-AtaT toxin-antitoxin system.
Nat. Chem. Biol. 15 pp.285 - 294 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.357Å R work:0.263R free:0.288

NDB ID:

6IJV

PDB ID:

6IJV 

Release:

2019-03-06

Title:

Solution NMR structure of a 14-mer dsDNA complexed with a novel NIR fluorescent probe QCy-DT

Classification:

DNA

Authors:

Basu, G., Ganguly, S.

Citation:

Solution NMR structure of a 14-mer dsDNA complexed with a novel NIR fluorescent probe, QCy-DT
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6AC7

PDB ID:

6AC7 

Release:

2019-02-27

Title:

Structure of a G-quadruplex

Classification:

DNA

Authors:

Sengar, A., Vandana, J.J., Chambers, V.S., Di Antonio, M., Winnerdy, F.R., Balasubramanian, S., Phan, A.T.

Citation:

Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.
Nucleic Acids Res. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6CFI

PDB ID:

6CFI 

Release:

2019-02-27

Title:

Crystal structure of Rad4-Rad23 bound to a 6-4 photoproduct UV lesion

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Min, J., Jeffrey, P.D.

Citation:

Crystal structure of Rad4-Rad23 bound to a 6-4 photoproduct UV lesion
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.36242Å R work:0.218R free:0.268

NDB ID:

6CHV

PDB ID:

6CHV 

Release:

2019-02-27

Title:

Proteus vulgaris HigA antitoxin bound to DNA

Classification:

ANTITOXIN/DNA

Authors:

Schureck, M.A., Meisner, J., Hoffer, E.D., Wang, D., Onuoha, N., Ei Cho, S., Lollar 3rd., P., Dunham, C.M.

Citation:

Structural basis of transcriptional regulation by the HigA antitoxin.
Mol. Microbiol. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.224R free:0.26

NDB ID:

6IMJ

PDB ID:

6IMJ 

Release:

2019-02-27

Title:

The crystal structure of Se-AsfvLIG:DNA complex

Classification:

LIGASE/DNA

Authors:

Chen, Y., Liu, H., Yang, C., Gao, Y., Yu, X., Chen, X., Cui, R., Zheng, L., Li, S., Li, X., Ma, J., Huang, Z., Li, J., Gan, J.

Citation:

Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun 10 pp.387 - 387 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.554Å R work:0.222R free:0.26

NDB ID:

6IMK

PDB ID:

6IMK 

Release:

2019-02-27

Title:

The crystal structure of AsfvLIG:CG complex

Classification:

LIGASE/DNA

Authors:

Chen, Y., Liu, H., Yang, C., Gao, Y., Yu, X., Chen, X., Cui, R., Zheng, L., Li, S., Li, X., Ma, J., Huang, Z., Li, J., Gan, J.

Citation:

Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun 10 pp.387 - 387 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.502Å R work:0.205R free:0.254

NDB ID:

6IML

PDB ID:

6IML 

Release:

2019-02-27

Title:

The crystal structure of AsfvLIG:CT1 complex

Classification:

LIGASE/DNA

Authors:

Chen, Y., Liu, H., Yang, C., Gao, Y., Yu, X., Chen, X., Cui, R., Zheng, L., Li, S., Li, X., Ma, J., Huang, Z., Li, J., Gan, J.

Citation:

Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun 10 pp.387 - 387 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.219R free:0.267

NDB ID:

6IMN

PDB ID:

6IMN 

Release:

2019-02-27

Title:

The crystal structure of AsfvLIG:CT2 complex

Classification:

LIGASE/DNA

Authors:

Chen, Y., Liu, H., Yang, C., Gao, Y., Yu, X., Chen, X., Cui, R., Zheng, L., Li, S., Li, X., Ma, J., Huang, Z., Li, J., Gan, J.

Citation:

Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun 10 pp.387 - 387 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.247R free:0.268

NDB ID:

6J2W

PDB ID:

6J2W 

Release:

2019-02-27

Title:

The structure of OBA3-OTA complex

Classification:

DNA

Authors:

Xu, G.H., Zhao, J.J., Liu, N., Yang, M.H., Zhao, Q., Liu, M.L., Li, C.G.

Citation:

Structure-Guided Post-SELEX Optimization of Aptamers
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6MIG

PDB ID:

6MIG 

Release:

2019-02-27

Title:

Crystal structure of host-guest complex with PB hachimoji DNA

Classification:

HYDROLASE/DNA

Authors:

Hoshika, S., Leal, N.A., Kim, M.J., Kim, M.S., Karalkar, N.B., Kim, H.J., Bates, A.M., Watkins Jr., N.E., SantaLucia, H.A., Meyer, A.J., DasGupta, S., Piccirilli, J.A., Ellington, A.D., SantaLucia Jr., J., Georgiadis, M.M., Benner, S.A.

Citation:

Hachimoji DNA and RNA: A genetic system with eight building blocks.
Science 363 pp.884 - 887 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.222R free:0.256

NDB ID:

6MIH

PDB ID:

6MIH 

Release:

2019-02-27

Title:

Crystal structure of host-guest complex with PC hachimoji DNA

Classification:

HYDROLASE/DNA

Authors:

Hoshika, S., Leal, N.A., Kim, M.J., Kim, M.S., Karalkar, N.B., Kim, H.J., Bates, A.M., Watkins Jr., N.E., SantaLucia, H.A., Meyer, A.J., DasGupta, S., Piccirilli, J.A., Ellington, A.D., SantaLucia Jr., J., Georgiadis, M.M., Benner, S.A.

Citation:

Hachimoji DNA and RNA: A genetic system with eight building blocks.
Science 363 pp.884 - 887 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.212R free:0.234

NDB ID:

6MIK

PDB ID:

6MIK 

Release:

2019-02-27

Title:

Crystal structure of host-guest complex with PP hachimoji DNA

Classification:

HYDROLASE/DNA

Authors:

Hoshika, S., Leal, N.A., Kim, M.J., Kim, M.S., Karalkar, N.B., Kim, H.J., Bates, A.M., Watkins Jr., N.E., SantaLucia, H.A., Meyer, A.J., DasGupta, S., Piccirilli, J.A., Ellington, A.D., SantaLucia Jr., J., Georgiadis, M.M., Benner, S.A.

Citation:

Hachimoji DNA and RNA: A genetic system with eight building blocks.
Science 363 pp.884 - 887 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.213R free:0.246

NDB ID:

6NCE

PDB ID:

6NCE 

Release:

2019-02-27

Title:

Crystal structure of the human FOXN3 DNA binding domain in complex with a forkhead DNA sequence

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Rogers, J.M., Waters, C.T., Seegar, T.C.M., Jarrett, S.M., Hallworth, A.N., Blacklow, S.C., Bulyk, M.L.

Citation:

Bispecific Forkhead Transcription Factor FoxN3 Recognizes Two Distinct Motifs with Different DNA Shapes.
Mol. Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.598Å R work:0.234R free:0.27

NDB ID:

6NCM

PDB ID:

6NCM 

Release:

2019-02-27

Title:

Crystal structure of the human FOXN3 DNA binding domain in complex with a forkhead-like (FHL) DNA sequence

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Rogers, J.M., Waters, C.T., Seegar, T.C.M., Jarrett, S.M., Hallworth, A.N., Blacklow, S.C., Bulyk, M.L.

Citation:

Bispecific Forkhead Transcription Factor FoxN3 Recognizes Two Distinct Motifs with Different DNA Shapes.
Mol. Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.704Å R work:0.233R free:0.275

NDB ID:

6Q4T

PDB ID:

6Q4T 

Release:

2019-02-27

Title:

KOD DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)acetamide)-2-dATP

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Diederichs, K., Marx, A.

Citation:

The Structure of an Archaeal B-Family DNA Polymerase in Complex with a Chemically Modified Nucleotide.
Angew.Chem.Int.Ed.Engl. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.997Å R work:0.202R free:0.231

NDB ID:

6Q4U

PDB ID:

6Q4U 

Release:

2019-02-27

Title:

KlenTaq DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)acetamide)-2-dATP

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Diederichs, K., Marx, A.

Citation:

The Structure of an Archaeal B-Family DNA Polymerase in Complex with a Chemically Modified Nucleotide.
Angew.Chem.Int.Ed.Engl. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.005Å R work:0.184R free:0.219

NDB ID:

6Q4V

PDB ID:

6Q4V 

Release:

2019-02-27

Title:

KlenTaq DNA polymerase in complex with dATP

Classification:

DNA BINDING PROTEIN

Authors:

Kropp, H.M., Diederichs, K., Marx, A.

Citation:

The Structure of an Archaeal B-Family DNA Polymerase in Complex with a Chemically Modified Nucleotide.
Angew.Chem.Int.Ed.Engl. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.006Å R work:0.185R free:0.218

NDB ID:

6DV9

PDB ID:

6DV9 

Release:

2019-02-20

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) containing 5nt RNA with 4nt spacer

Classification:

TRANSFERASE/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Cho, M.S., Feng, Y., Das, K., Ebright, R.H.

Citation:

Structural basis of ECF-sigma-factor-dependent transcription initiation.
Nat Commun 10 pp.710 - 710 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.184R free:0.231

NDB ID:

6DVB

PDB ID:

6DVB 

Release:

2019-02-20

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) containing 5nt RNA with 5nt spacer

Classification:

TRANSFERASE/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Cho, M.S., Feng, Y., Das, K., Ebright, R.H.

Citation:

Structural basis of ECF-sigma-factor-dependent transcription initiation.
Nat Commun 10 pp.710 - 710 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.201R free:0.24

NDB ID:

6DVC

PDB ID:

6DVC 

Release:

2019-02-20

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) containing 5nt RNA with 6nt spacer

Classification:

TRANSFERASE/DNA/RNA

Authors:

Lin, W., Mandal, S., Degen, D., Cho, M.S., Feng, Y., Das, K., Ebright, R.H.

Citation:

Structural basis of ECF-sigma-factor-dependent transcription initiation.
Nat Commun 10 pp.710 - 710 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.197R free:0.234

NDB ID:

6DVD

PDB ID:

6DVD 

Release:

2019-02-20

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) with 6 nt spacer and bromine labelled in position ""-11

Classification:

TRANSFERASE/DNA

Authors:

Lin, W., Mandal, S., Degen, D., Cho, M.S., Feng, Y., Das, K., Ebright, R.H.

Citation:

Structural basis of ECF-sigma-factor-dependent transcription initiation.
Nat Commun 10 pp.710 - 710 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.899Å R work:0.22R free:0.246

NDB ID:

6DVE

PDB ID:

6DVE 

Release:

2019-02-20

Title:

Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF selenomethionine-labelled sigma factor L) with 6 nt spacer

Classification:

TRANSFERASE/DNA

Authors:

Lin, W., Mandal, S., Degen, D., Cho, M.S., Feng, Y., Das, K., Ebright, R.H.

Citation:

Structural basis of ECF-sigma-factor-dependent transcription initiation.
Nat Commun 10 pp.710 - 710 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.812Å R work:0.199R free:0.248

NDB ID:

6IR8

PDB ID:

6IR8 

Release:

2019-02-20

Title:

Rice WRKY/DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

Cheng, X., Zhao, Y., Jiang, Q., Yang, J., Zhao, W., Taylor, I.A., Peng, Y.L., Wang, D., Liu, J.

Citation:

Structural basis of dimerization and dual W-box DNA recognition by rice WRKY domain.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.192R free:0.244

NDB ID:

5Z23

PDB ID:

5Z23 

Release:

2019-02-13

Title:

Crystal structure of the nucleosome containing a chimeric histone H3/CENP-A CATD

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Arimura, Y., Tachiwana, H., Takagi, H., Hori, T., Kimura, H., Fukagawa, T., Kurumizaka, H.

Citation:

The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.
Nat Commun 10 pp.576 - 576 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.73Å R work:0.202R free:0.261

NDB ID:

5ZAS

PDB ID:

5ZAS 

Release:

2019-02-13

Title:

Crystal structure of 5-formylcytosine containing decamer dsDNA

Classification:

DNA

Authors:

Zhang, L., Fu, T.R.

Citation:

Crystal structure of 5-formylcytosine containing decamer dsDNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.146R free:0.162

NDB ID:

5ZAT

PDB ID:

5ZAT 

Release:

2019-02-13

Title:

Crystal structure of 5-carboxylcytosine containing decamer dsDNA

Classification:

DNA

Authors:

Zhang, L., Fu, T.R.

Citation:

Crystal structure of 5-carboxylcytosine containing decamer dsDNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.06Å R work:0.156R free:0.181

NDB ID:

5ZBX

PDB ID:

5ZBX 

Release:

2019-02-13

Title:

The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Arimura, Y., Tachiwana, H., Takagi, H., Hori, T., Kimura, H., Fukagawa, T., Kurumizaka, H.

Citation:

The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.
Nat Commun 10 pp.576 - 576 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.58Å R work:0.213R free:0.249

NDB ID:

6HP7

PDB ID:

6HP7 

Release:

2019-02-13

Title:

ARBITRIUM PEPTIDE RECEPTOR FROM SPBETA PHAGE in complex with 43 mer DNA

Classification:

DNA BINDING PROTEIN

Authors:

Gallego Del Sol, F., Penades, J.R., Marina, A.

Citation:

Deciphering the Molecular Mechanism Underpinning Phage Arbitrium Communication Systems.
Mol. Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.216R free:0.246

NDB ID:

6IDG

PDB ID:

6IDG 

Release:

2019-02-13

Title:

antibody 64M-5 Fab in complex with dT(6-4)T

Classification:

IMMUNE SYSTEM

Authors:

Yokoyama, H., Mizutani, R., Noguchi, S., Hayashida, N.

Citation:

Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms
Acta Crystallogr.,Sect.F 75 pp.80 - 88 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.192R free:0.239

NDB ID:

6IUC

PDB ID:

6IUC 

Release:

2019-02-13

Title:

Structure of Helicobacter pylori Soj-ATP complex bound to DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chu, C.H., Yen, C.Y., Chen, B.W., Lin, M.G., Wang, L.H., Tang, K.Z., Hsiao, C.D., Sun, Y.J.

Citation:

Crystal structures of HpSoj-DNA complexes and the nucleoid-adaptor complex formation in chromosome segregation.
Nucleic Acids Res. 47 pp.2113 - 2129 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.202R free:0.263

NDB ID:

6IUD

PDB ID:

6IUD 

Release:

2019-02-13

Title:

Structure of Helicobacter pylori Soj-ADP complex bound to DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chu, C.H., Yen, C.Y., Chen, B.W., Lin, M.G., Wang, L.H., Tang, K.Z., Hsiao, C.D., Sun, Y.J.

Citation:

Crystal structures of HpSoj-DNA complexes and the nucleoid-adaptor complex formation in chromosome segregation.
Nucleic Acids Res. 47 pp.2113 - 2129 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.506Å R work:0.204R free:0.257

NDB ID:

6MXO

PDB ID:

6MXO 

Release:

2019-02-13

Title:

Structure of HPoleta incorporating dCTP opposite the 3-prime Pt(DACH)-GG

Classification:

NUCLEAR PROTEIN/DNA

Authors:

Ouzon-Shubeita, H., Baker, M., Koag, M.C., Lee, S.

Citation:

Structural basis for the bypass of the major oxaliplatin-DNA adducts by human DNA polymerase eta.
Biochem. J. 476 pp.747 - 758 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.174R free:0.229

NDB ID:

6NEB

PDB ID:

6NEB 

Release:

2019-02-13

Title:

MYC Promoter G-Quadruplex with 1:6:1 loop length

Classification:

DNA

Authors:

Dickerhoff, J., Onel, B., Chen, L., Chen, Y., Yang, D.

Citation:

Solution Structure of a MYC Promoter G-Quadruplex with 1:6:1 Loop Length
Acs Omega 4 pp.2533 - 2539 2019

Experiment:

SOLUTION NMR

NDB ID:

6AKO

PDB ID:

6AKO 

Release:

2019-02-06

Title:

Crystal Structure of FOXC2 DBD Bound to DBE2 DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, X., Wei, H., Li, J., Liang, X., Dai, S., Jiang, L., Guo, M., Qu, L., Chen, Z., Chen, L., Chen, Y.

Citation:

Structural basis for DNA recognition by FOXC2.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.396Å R work:0.227R free:0.25

NDB ID:

6AKP

PDB ID:

6AKP 

Release:

2019-02-06

Title:

Crystal Structural of FOXC2 DNA binding domain bound to PC promoter

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, X., Wei, H., Li, J., Liang, X., Dai, S., Jiang, L., Guo, M., Qu, L., Chen, Z., Chen, L., Chen, Y.

Citation:

Structural basis for DNA recognition by FOXC2.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.323Å R work:0.217R free:0.246

NDB ID:

6FL1

PDB ID:

6FL1 

Release:

2019-02-06

Title:

Crystal structure of the complex between the Lactococcus lactis FPG mutant T221P and a Fapy-dG containing DNA

Classification:

HYDROLASE

Authors:

Coste, F., Castaing, B., Ober, M., Carell, T.

Citation:

Crystal structure of the complex between the Lactococcus lactis FPG mutant T221P and a Fapy-dG containing DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.163R free:0.178

NDB ID:

6G1L

PDB ID:

6G1L 

Release:

2019-02-06

Title:

MITF/CLEARbox structure

Classification:

TRANSCRIPTION

Authors:

Moller, K., Sigurbjornsdottir, S., Arnthorsson, A.O., Pogenberg, V., Dilshat, R., Fock, V., Brynjolfsdottir, S.H., Bindesboll, C., Bessadottir, M., Ogmundsdottir, H.M., Simonsen, A., Larue, L., Wilmanns, M., Thorsson, V., Steingrimsson, E., Ogmundsdottir, M.H.

Citation:

MITF has a central role in regulating starvation-induced autophagy in melanoma.
Sci Rep 9 pp.1055 - 1055 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.214R free:0.252

NDB ID:

5Z7D

PDB ID:

5Z7D 

Release:

2019-01-30

Title:

p204HINab-dsDNA complex structure

Classification:

IMMUNE SYSTEM

Authors:

Jin, T., Jiang, J., Xiao, T.S.

Citation:

p204-HINab:dsDNA complex structure
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:4.504Å R work:0.265R free:0.29

NDB ID:

5ZOE

PDB ID:

5ZOE 

Release:

2019-01-30

Title:

Crystal Structure of D181A hFen1 in complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Xu, H., Shi, R., Han, W., Cheng, J., Xu, X., Cheng, K., Wang, L., Tian, B., Zheng, L., Shen, B., Hua, Y., Zhao, Y.

Citation:

Structural basis of 5' flap recognition and protein-protein interactions of human flap endonuclease 1.
Nucleic Acids Res. 46 pp.11315 - 11325 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.215R free:0.227

NDB ID:

5ZOF

PDB ID:

5ZOF 

Release:

2019-01-30

Title:

Crystal Structure of D181A/R192F hFen1 in complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Xu, H., Shi, R., Han, W., Cheng, J., Xu, X., Cheng, K., Wang, L., Tian, B., Zheng, L., Shen, B., Hua, Y., Zhao, Y.

Citation:

Structural basis of 5' flap recognition and protein-protein interactions of human flap endonuclease 1.
Nucleic Acids Res. 46 pp.11315 - 11325 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.249Å R work:0.235R free:0.268