A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Aug-2021 number of released structures: 11628
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7941  Download results as an excel file       Gallery view

NDB ID:

7ABS

PDB ID:

7ABS 

Release:

2021-08-04

Title:

Structure of human DCLRE1C/Artemis in complex with DNA - re-evaluation of 6WO0

Classification:

LYASE

Authors:

Newman, J.A., Yosaatmadja, Y., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.97Å R work:0.215R free:0.275

NDB ID:

7DBM

PDB ID:

7DBM 

Release:

2021-08-04

Title:

HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V:DNA:dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Nakajima, S., Watashi, K., Kato, T., Muramatsu, M., Wakita, T., Tamura, N., Hattori, S.I., Maeda, K., Mitsuya, H., Yasutake, Y., Toyoda, T.

Citation:

Biochemical and Structural Properties of Entecavir-Resistant Hepatitis B Virus Polymerase with L180M/M204V Mutations.
J.Virol. 95 pp.e0240120 - e0240120 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.43Å R work:0.18R free:0.224

NDB ID:

7DBN

PDB ID:

7DBN 

Release:

2021-08-04

Title:

HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V/F160M:DNA:dCTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Nakajima, S., Watashi, K., Kato, T., Muramatsu, M., Wakita, T., Tamura, N., Hattori, S.I., Maeda, K., Mitsuya, H., Yasutake, Y., Toyoda, T.

Citation:

Biochemical and Structural Properties of Entecavir-Resistant Hepatitis B Virus Polymerase with L180M/M204V Mutations.
J.Virol. 95 pp.e0240120 - e0240120 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.67Å R work:0.176R free:0.224

NDB ID:

7JLH

PDB ID:

7JLH 

Release:

2021-08-04

Title:

Structure of Centromeric Satellite III Non-canonical Duplex

Classification:

DNA

Authors:

Yatsunyk, L.A., Chen, E.V., Lee, H.

Citation:

Crystal Structure of 4-repeat Satellite III Sequence with Non-Canonical Base Interactions
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.57Å R work:0.22R free:0.255

NDB ID:

7L4C

PDB ID:

7L4C 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CTT DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.11Å R work:0.185R free:0.214

NDB ID:

7L4F

PDB ID:

7L4F 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CAT DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.208R free:0.25

NDB ID:

7L4H

PDB ID:

7L4H 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CTG DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.56Å R work:0.208R free:0.247

NDB ID:

7L4K

PDB ID:

7L4K 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CCG DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.61Å R work:0.213R free:0.24

NDB ID:

7L4M

PDB ID:

7L4M 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CCT DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.805Å R work:0.213R free:0.263

NDB ID:

7L4N

PDB ID:

7L4N 

Release:

2021-08-04

Title:

Crystal structure of the DRM2 (C397R)-CCG DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.247Å R work:0.18R free:0.209

NDB ID:

7LPG

PDB ID:

7LPG 

Release:

2021-08-04

Title:

APE1 product complex with abasic ribonucleotide DNA

Classification:

LYASE/DNA

Authors:

Hoitsma, N.M., Click, T.H., Agarwal, P.K., Freudenthal, B.D.

Citation:

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker.
Comput Struct Biotechnol J 19 pp.3293 - 3302 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.08Å R work:0.219R free:0.262

NDB ID:

7LPH

PDB ID:

7LPH 

Release:

2021-08-04

Title:

APE1 Mn-bound product complex with abasic ribonucleotide DNA

Classification:

LYASE/DNA

Authors:

Hoitsma, N.M., Click, T.H., Agarwal, P.K., Freudenthal, B.D.

Citation:

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker.
Comput Struct Biotechnol J 19 pp.3293 - 3302 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.99Å R work:0.191R free:0.236

NDB ID:

7LPI

PDB ID:

7LPI 

Release:

2021-08-04

Title:

APE1 phosphorothioate substrate complex with abasic ribonucleotide DNA

Classification:

LYASE/DNA

Authors:

Hoitsma, N.M., Click, T.H., Agarwal, P.K., Freudenthal, B.D.

Citation:

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker.
Comput Struct Biotechnol J 19 pp.3293 - 3302 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.196R free:0.244

NDB ID:

7LPJ

PDB ID:

7LPJ 

Release:

2021-08-04

Title:

APE1 Mn-bound phosphorothioate substrate complex with abasic ribonucleotide DNA

Classification:

LYASE/DNA

Authors:

Hoitsma, N.M., Click, T.H., Agarwal, P.K., Freudenthal, B.D.

Citation:

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker.
Comput Struct Biotechnol J 19 pp.3293 - 3302 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.56Å R work:0.182R free:0.248

NDB ID:

7NWD

PDB ID:

7NWD 

Release:

2021-08-04

Title:

Three-quartet c-kit2 G-quadruplex stabilized by a pyrene conjugate

Classification:

DNA

Authors:

Peterkova, K., Durnik, I., Marek, R., Plavec, J., Podbevsek, P.

Citation:

c-kit2 G-quadruplex stabilized via a covalent probe: Exploring G-quartet asymmetry
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7EL1

PDB ID:

7EL1 

Release:

2021-07-28

Title:

Structure of a protein from bacteria

Classification:

UNKNOWN FUNCTION

Authors:

Liu, H., Zhu, Y., Lu, Z., Huang, Z.

Citation:

Structural basis of Staphylococcus aureus Cas9 inhibition by AcrIIA14.
Nucleic Acids Res. 49 pp.6587 - 6595 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.22Å R work:0.213R free:0.242

NDB ID:

7CLI

PDB ID:

7CLI 

Release:

2021-07-21

Title:

Structure of NF-kB p52 homodimer bound to P-Selectin kB DNA fragment

Classification:

DNA BINDING PROTEIN

Authors:

Meshcheryakov, V.A., Wang, V.Y.-F.

Citation:

Structure of NF-kB p52 homodimer bound to P-Selectin kB DNA fragment
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.236R free:0.275

NDB ID:

7DTA

PDB ID:

7DTA 

Release:

2021-07-21

Title:

Solution structure of the C-clamp domain from human HDBP1 in complex with DNA

Classification:

DNA BINDING PROTEIN

Authors:

Duan, B., Fu, D., Zhang, C., Ding, P., Dong, X., Xia, B.

Citation:

Selective Nonmethylated CpG DNA Recognition Mechanism of Cysteine Clamp Domains.
J.Am.Chem.Soc. 143 pp.7688 - 7697 2021

Experiment:

SOLUTION NMR

NDB ID:

7MWL

PDB ID:

7MWL 

Release:

2021-07-21

Title:

The TAM domain of BAZ2A in complex with a 12mer mCG DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Dong, A., Li, Y., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Min, J., Structural Genomics Consortium (SGC)

Citation:

The TAM domain of BAZ2A in complex with a 12mer mCG DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.84Å R work:0.212R free:0.229

NDB ID:

7RAY

PDB ID:

7RAY 

Release:

2021-07-21

Title:

Crystal structure of MBD2 with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, K., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Min, J., Structural Genomics Consortium (SGC)

Citation:

Crystal structure of MBD2 with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.78Å R work:0.209R free:0.252

NDB ID:

6WQG

PDB ID:

6WQG 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J3 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.003Å R work:0.232R free:0.25

NDB ID:

6WR3

PDB ID:

6WR3 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J36 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.173Å R work:0.247R free:0.255

NDB ID:

6WR5

PDB ID:

6WR5 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J35 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.063Å R work:0.25R free:0.263

NDB ID:

6WR7

PDB ID:

6WR7 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J33 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.11Å R work:0.221R free:0.258

NDB ID:

6WR9

PDB ID:

6WR9 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J32 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.071Å R work:0.222R free:0.246

NDB ID:

6WRA

PDB ID:

6WRA 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J34 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.206R free:0.235

NDB ID:

6WRB

PDB ID:

6WRB 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J5 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.25R free:0.263

NDB ID:

6WRC

PDB ID:

6WRC 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J31 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.178Å R work:0.248R free:0.267

NDB ID:

6WRI

PDB ID:

6WRI 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J28 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.057Å R work:0.197R free:0.247

NDB ID:

6WRJ

PDB ID:

6WRJ 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J26 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.129Å R work:0.234R free:0.281

NDB ID:

6WSN

PDB ID:

6WSN 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J7 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.052Å R work:0.257R free:0.287

NDB ID:

6WSO

PDB ID:

6WSO 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J8 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.106Å R work:0.198R free:0.222

NDB ID:

6WSP

PDB ID:

6WSP 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J9 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.049Å R work:0.261R free:0.288

NDB ID:

6WSQ

PDB ID:

6WSQ 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J10 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.807Å R work:0.243R free:0.291

NDB ID:

6WSR

PDB ID:

6WSR 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J10 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.234R free:0.244

NDB ID:

6WSS

PDB ID:

6WSS 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J15 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.001Å R work:0.248R free:0.272

NDB ID:

6WST

PDB ID:

6WST 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J16 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.055Å R work:0.212R free:0.262

NDB ID:

6WSU

PDB ID:

6WSU 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J19 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.756Å R work:0.21R free:0.232

NDB ID:

6WSV

PDB ID:

6WSV 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J20 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.101Å R work:0.246R free:0.261

NDB ID:

6WSW

PDB ID:

6WSW 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J21 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.233R free:0.277

NDB ID:

6WSX

PDB ID:

6WSX 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J22 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.122Å R work:0.246R free:0.256

NDB ID:

6WSY

PDB ID:

6WSY 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J23 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.053Å R work:0.217R free:0.254

NDB ID:

6WSZ

PDB ID:

6WSZ 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J24 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.053Å R work:0.237R free:0.261

NDB ID:

6WT0

PDB ID:

6WT0 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J25 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.106Å R work:0.247R free:0.262

NDB ID:

6WT1

PDB ID:

6WT1 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J29 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.11Å R work:0.217R free:0.255

NDB ID:

6X8B

PDB ID:

6X8B 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J6 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.899Å R work:0.237R free:0.25

NDB ID:

6X8C

PDB ID:

6X8C 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J1 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.098Å R work:0.238R free:0.267

NDB ID:

6XDV

PDB ID:

6XDV 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J3 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.003Å R work:0.226R free:0.252

NDB ID:

6XDW

PDB ID:

6XDW 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J5 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.148Å R work:0.224R free:0.259

NDB ID:

6XDX

PDB ID:

6XDX 

Release:

2021-07-14

Title:

Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J6 immobile Holliday junction

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Structural and Computational Based Approach for the Creation of a Toolbox of Immobile Holliday Junctions for DNA-directed Self-assembly
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.899Å R work:0.244R free:0.258