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As of 18-Jan-2017 number of released structures: 8709
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5859  Download results as an excel file       Gallery view

NDB ID:

5HHH

PDB ID:

5HHH 

Release:

2017-01-18

Title:

Structure of human DNA polymerase beta Host-Guest complexed with the control G for N7-CBZ-platination

Classification:

TRANSFERASE, LYASE/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta Host-Guest complexed with the control G for N7-CBZ-platination
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.363Å R work:0.212R free:0.265

NDB ID:

5HHI

PDB ID:

5HHI 

Release:

2017-01-18

Title:

Structure of human DNA polymerase beta Host-Guest complexed with CBZ-platinated N7-G

Classification:

TRANSFERASE, LYASE/DNA

Authors:

Lee, S., Koag, M.-C.

Citation:

Structure of human DNA polymerase beta Host-Guest complexed with CBZ-platinated N7-G
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.517Å R work:0.222R free:0.279

NDB ID:

5HK3

PDB ID:

5HK3 

Release:

2017-01-18

Title:

Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with DNA

Classification:

hydrolase/dna

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.191R free:0.206

NDB ID:

5HR9

PDB ID:

5HR9 

Release:

2017-01-18

Title:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.206R free:0.255

NDB ID:

5HRB

PDB ID:

5HRB 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX:DNA1 binary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.176R free:0.202

NDB ID:

5HRD

PDB ID:

5HRD 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX:DNA2 binary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.196R free:0.244

NDB ID:

5HRE

PDB ID:

5HRE 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX:DNA3 binary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.194R free:0.235

NDB ID:

5HRF

PDB ID:

5HRF 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX: DNA5: dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.212R free:0.263

NDB ID:

5HRG

PDB ID:

5HRG 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX(D51N mutant):DNA4 binary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.19R free:0.238

NDB ID:

5HRH

PDB ID:

5HRH 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX(H115F/R127A mutant): 1nt-gap(P) DNA2:dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.231R free:0.272

NDB ID:

5HRI

PDB ID:

5HRI 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX:DNA1 binary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of AsfvPolX: 1nt-gap(P) DNA1: dGTP ternary complex.
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.207R free:0.254

NDB ID:

5HRK

PDB ID:

5HRK 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.232R free:0.272

NDB ID:

5HRL

PDB ID:

5HRL 

Release:

2017-01-18

Title:

The crystal structure of AsfvPolX: 1nt-gap(P) DNA2: dGTP ternary complex.

Classification:

TRANSFERASE/DNA

Authors:

Chen, Y.Q., Zhang, J., Gan, J.H.

Citation:

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.227R free:0.257

NDB ID:

5I36

PDB ID:

5I36 

Release:

2017-01-18

Title:

Crystal structure of color device state A

Classification:

DNA

Authors:

Hao, Y., Kristiansen, M., Sha, R., Birktoft, J., Mao, C., Seeman, N.C.

Citation:

A Device that Operates Within a Self-Assembled DNA Crystal
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:5.123Å R work:0.134R free:0.165

NDB ID:

5I6Q

PDB ID:

5I6Q 

Release:

2017-01-18

Title:

Crystal structure of color device state B

Classification:

DNA

Authors:

Hao, Y., Kristiansen, M., Sha, R., Birktoft, J., Mao, C., Seeman, N.C.

Citation:

A Device that Operates Within a Self-Assembled DNA Crystal
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:4.912Å R work:0.148R free:0.225

NDB ID:

5I6T

PDB ID:

5I6T 

Release:

2017-01-18

Title:

Crystal structure of color device state C

Classification:

DNA

Authors:

Hao, Y., Kristiansen, M., Sha, R., Birktoft, J., Mao, C., Seeman, N.C.

Citation:

A Device that Operates Within a Self-Assembled DNA Crystal
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:5.283Å R work:0.155R free:0.202

NDB ID:

5TW1

PDB ID:

5TW1 

Release:

2017-01-18

Title:

Crystal structure of a Mycobacterium smegmatis transcription initiation complex with RbpA

Classification:

TRANSCRIPTION ACTIVATOR/TRANSFERASE/DNA

Authors:

Hubin, E.A., Fay, A., Xu, C., Bean, J.M., Saecker, R.M., Glickman, M.S., Darst, S.A., Campbell, E.A.

Citation:

Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA.
Elife 6 pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.76Å R work:0.238R free:0.279

NDB ID:

5CY1

PDB ID:

5CY1 

Release:

2017-01-11

Title:

Tn3 resolvase - site III complex crystal form I

Classification:

HYDROLASE, LIGASE/DNA

Authors:

Montano, S.P., Rice, P.A.

Citation:

Tn3 resolvase - accessory site complexes: DNA geometry dictates complex geometry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.248R free:0.291

NDB ID:

5CY2

PDB ID:

5CY2 

Release:

2017-01-11

Title:

Tn3 resolvase - site III complex crystal form II

Classification:

recombination/DNA

Authors:

Montano, S.P., Rice, P.A.

Citation:

Structures of resolvase - accessory site complexes
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:4.0Å R work:0.207R free:0.249

NDB ID:

5HDN

PDB ID:

5HDN 

Release:

2017-01-11

Title:

Crystal structure of heat shock factor1-DBD complex with ds-DNA and TtT

Classification:

TRANSCRIPTION

Authors:

Feng, H., Liu, W., Wang, D.C.

Citation:

HSF1-DBD crystal structure
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.68Å R work:0.174R free:0.201

NDB ID:

5L7C

PDB ID:

5L7C 

Release:

2017-01-11

Title:

Structural basis of human clamp sliding on DNA

Classification:

DNA BINDING PROTEIN

Authors:

De March, M., Merino, N., Barrera-Vilarmau, S., Crehuet, R., Onesti, S., Blanco, F.J., De Biasio, A.

Citation:

Structural basis of human PCNA sliding on DNA.
Nat Commun 8 pp.13935 - 13935 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.82Å R work:0.252R free:0.291

NDB ID:

5TB8

PDB ID:

5TB8 

Release:

2017-01-11

Title:

Precatalytic ternary complex of Human DNA Polymerase Beta in closed conformation With Gapped DNA substrate incoming (-)3TC-TP and Mn2+.

Classification:

TRANSFERASE/DNA

Authors:

Reed, A.J., Vyas, R., Raper, A.T., Suo, Z.

Citation:

Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase.
J. Am. Chem. Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.181R free:0.23

NDB ID:

5TB9

PDB ID:

5TB9 

Release:

2017-01-11

Title:

Precatalytic ternary complex of Human DNA Polymerase Beta in closed conformation With Gapped DNA substrate incoming (-)FTC-TP and Mn2+.

Classification:

TRANSFERASE/DNA

Authors:

Reed, A.J., Vyas, R., Raper, A.T., Suo, Z.

Citation:

Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase.
J. Am. Chem. Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.49Å R work:0.204R free:0.266

NDB ID:

5TBA

PDB ID:

5TBA 

Release:

2017-01-11

Title:

Postcatalytic ternary complex of Human DNA Polymerase Beta with Gapped DNA substrate, incorporated (-)3TC and PPi.

Classification:

TRANSFERASE/DNA

Authors:

Reed, A.J., Vyas, R., Raper, A.T., Suo, Z.

Citation:

Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase.
J. Am. Chem. Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.49Å R work:0.204R free:0.273

NDB ID:

5TBB

PDB ID:

5TBB 

Release:

2017-01-11

Title:

Postcatalytic ternary complex of Human DNA Polymerase Beta with Gapped DNA substrate, incorporated (-)FTC and PPi.

Classification:

TRANSFERASE/DNA

Authors:

Reed, A.J., Vyas, R., Raper, A.T., Suo, Z.

Citation:

Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase.
J. Am. Chem. Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.39Å R work:0.212R free:0.268

NDB ID:

5TBC

PDB ID:

5TBC 

Release:

2017-01-11

Title:

PRECATALYTIC TERNARY COMPLEX OF HUMAN DNA POLYMERASE BETA WITH GAPPED DNA SUBSTRATE, INCORPORATED (-)3TC-MP AND AN ANOTHER INCOMING (-)3TC-TP NUCLEOTIDE.

Classification:

TRANSFERASE/DNA

Authors:

Reed, A.J., Vyas, R., Raper, A.T., Suo, Z.

Citation:

Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase.
J. Am. Chem. Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.228R free:0.279

NDB ID:

5TKZ

PDB ID:

5TKZ 

Release:

2017-01-11

Title:

MEC-8 N-terminal RRM bound to tandem GCAC ligand

Classification:

SPLICING

Authors:

Soufari, H., Mackereth, C.D.

Citation:

Conserved binding of GCAC motifs by MEC-8, couch potato and the RBPMS protein family.
RNA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.529Å R work:0.232R free:0.271

NDB ID:

5JJV

PDB ID:

5JJV 

Release:

2016-12-28

Title:

Crystal structure of XerH site-specific recombinase bound to palindromic difH substrate: post-cleavage complex

Classification:

RECOMBINATION

Authors:

Bebel, A., Karaca, E., Kumar, B., Stark, W.M., Barabas, O.

Citation:

Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.194R free:0.22

NDB ID:

5JK0

PDB ID:

5JK0 

Release:

2016-12-28

Title:

Crystal structure of XerH site-specific recombinase bound to difH substrate: pre-cleavage complex

Classification:

CELL CYCLE

Authors:

Bebel, A., Karaca, E., Kumar, B., Stark, W.M., Barabas, O.

Citation:

Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.191R free:0.223

NDB ID:

5K7Z

PDB ID:

5K7Z 

Release:

2016-12-28

Title:

Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA

Classification:

TRANSCRIPTION

Authors:

Bock, T., Volz, C., Mueller, R., Blankenfeldt, W.

Citation:

Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.92Å R work:0.208R free:0.245

NDB ID:

5L6L

PDB ID:

5L6L 

Release:

2016-12-28

Title:

Structure of Caulobacter crescentus VapBC1 bound to operator DNA

Classification:

HYDROLASE

Authors:

Bendtsen, K.L., Xu, K., Luckmann, M., Winther, K.S., Shah, S.A., Pedersen, C.N., Brodersen, D.E.

Citation:

Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.177R free:0.24

NDB ID:

5SWW

PDB ID:

5SWW 

Release:

2016-12-28

Title:

Crystal Structure of Human APOBEC3A complexed with ssDNA

Classification:

Hydrolase/DNA

Authors:

Shi, K., Carpenter, M.A., Banerjee, S., Shaban, N.M., Kurahashi, K., Salamango, D.J., McCann, J.L., Starrett, G.J., Duffy, J.V., Demir, O., Amaro, R.E., Harki, D.A., Harris, R.S., Aihara, H.

Citation:

Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Nat. Struct. Mol. Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.151Å R work:0.209R free:0.263

NDB ID:

5TD5

PDB ID:

5TD5 

Release:

2016-12-28

Title:

Crystal Structure of Human APOBEC3B variant complexed with ssDNA

Classification:

Hydrolase/DNA

Authors:

Shi, K., Carpenter, M.A., Banerjee, S., Shaban, N.M., Kurahashi, K., Salamango, D.J., McCann, J.L., Starrett, G.J., Duffy, J.V., Demir, O., Amaro, R.E., Harki, D.A., Harris, R.S., Aihara, H.

Citation:

Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Nat. Struct. Mol. Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.718Å R work:0.18R free:0.208

NDB ID:

5F9L

PDB ID:

5F9L 

Release:

2016-12-21

Title:

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION

Classification:

Transferase/DNA

Authors:

Patra, A., Egli, M.

Citation:

Bypass of the 1, N2-Ethenodeoxyguanosine Lesion by Human DNA Polymerase Eta
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.592Å R work:0.19R free:0.248

NDB ID:

5F9N

PDB ID:

5F9N 

Release:

2016-12-21

Title:

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dCMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION

Classification:

Transferase/DNA

Authors:

Patra, A., Egli, M.

Citation:

Bypass of the 1, N2-Ethenodeoxyguanosine Lesion by Human DNA Polymerase Eta
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.23Å R work:0.157R free:0.21

NDB ID:

5L06

PDB ID:

5L06 

Release:

2016-12-21

Title:

Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd Position

Classification:

DNA

Authors:

Miears, H.L., Hoppins, J.J., Gruber, D.R., Kasymov, R.D., Zharkov, D.O., Smirnov, S.L.

Citation:

Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd Position
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5L2G

PDB ID:

5L2G 

Release:

2016-12-21

Title:

Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th Position

Classification:

DNA

Authors:

Miears, H.L., Hoppins, J.J., Gruber, D.R., Kasymov, R.D., Johnson, E.C., Zharkov, D.O., Smirnov, S.L.

Citation:

Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th Position
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5T14

PDB ID:

5T14 

Release:

2016-12-21

Title:

DNA polymerase kappa extending beyond a bulky major benzo[a]pyrene adduct

Classification:

TRANSFERASE/DNA

Authors:

Jha, V., Ling, H.

Citation:

Structural basis of accurate replication beyond a bulky major benzo[a]pyrene adduct by human DNA polymerase kappa.
DNA Repair (Amst.) 49 pp.43 - 50 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.203R free:0.265

NDB ID:

5TCT

PDB ID:

5TCT 

Release:

2016-12-21

Title:

The Structure of SV40 Large T Hexameric Helicase in Complex with AT-rich Origin DNA

Classification:

hydrolase/dna

Authors:

Gai, D., Wang, D., Li, S.X., Chen, X.S.

Citation:

The structure of SV40 large T hexameric helicase in complex with AT-rich origin DNA.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.277R free:0.303

NDB ID:

5TGX

PDB ID:

5TGX 

Release:

2016-12-21

Title:

Restriction/modification system-Type II R-SwaI complexed with partially cleaved DNA

Classification:

DNA BINDING PROTEIN

Authors:

Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.

Citation:

DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.197R free:0.241

NDB ID:

5TH3

PDB ID:

5TH3 

Release:

2016-12-21

Title:

Restriction/modification system-Type II R.SwaI cleaved DNA complex

Classification:

DNA BINDING PROTEIN

Authors:

Shen, B.W., Heiter, D.F., Lunnen, K.D., Wilson, G.G., Stoddard, B.L.

Citation:

DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.33Å R work:0.198R free:0.238

NDB ID:

5EYO

PDB ID:

5EYO 

Release:

2016-12-14

Title:

The crystal structure of the Max bHLH domain in complex with 5-carboxyl cytosine DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, D., Hashimoto, H., Zhang, X., Barwick, B.G., Lonial, S., Boise, L.H., Vertino, P.M., Cheng, X.

Citation:

MAX is an epigenetic sensor of 5-carboxylcytosine and is altered in multiple myeloma.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.39Å R work:0.203R free:0.229

NDB ID:

5FB2

PDB ID:

5FB2 

Release:

2016-12-14

Title:

S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide

Classification:

TRANSCRIPTION/DNA

Authors:

Birukou, I., Newman, C.E., Brennan, R.G.

Citation:

S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.187R free:0.231

NDB ID:

5SZT

PDB ID:

5SZT 

Release:

2016-12-14

Title:

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 7-(N-(10-hydroxydecanoyl)-aminopentenyl)-7-deaza-2'-dATP

Classification:

TRANSFERASE

Authors:

Marx, A., Hottin, A., Betz, K., Diederichs, K.

Citation:

Structural basis for the KlenTaq DNA Polymerase catalyzed Incorporation of Alkene- versus Alkyne-modified Nucleotides.
Chemistry pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.193R free:0.229

NDB ID:

5E41

PDB ID:

5E41 

Release:

2016-12-07

Title:

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(N-(10-hydroxydecanoyl)-aminopentenyl)-2'-deoxyuridine-triphosphate

Classification:

TRANSFERASE

Authors:

Marx, A., Hottin, A., Betz, K., Diederichs, K.

Citation:

Structural basis for the KlenTaq DNA Polymerase catalyzed Incorporation of Alkene- versus Alkyne-modified Nucleotides.
Chemistry pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.191R free:0.236

NDB ID:

5FDK

PDB ID:

5FDK 

Release:

2016-12-07

Title:

Crystal structure of RecU(D88N) in complex with palindromic DNA duplex

Classification:

HYDROLASE

Authors:

Khavnekar, S., Dantu, S.C., Sedelnikova, S., Ayora, S., Rafferty, J., Kale, A.

Citation:

Structural insights into dynamics of RecU-HJ complex formation elucidates key role of NTR and stalk region toward formation of reactive state.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.208Å R work:0.256R free:0.328

NDB ID:

5LEJ

PDB ID:

5LEJ 

Release:

2016-12-07

Title:

The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif

Classification:

TRANSCRIPTION

Authors:

Hall, M., Grundstrom, C., Begum, A., Lindberg, M.J., Sauer, U.H., Almqvist, F., Johansson, J., Sauer-Eriksson, A.E.

Citation:

Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria.
Proc. Natl. Acad. Sci. U.S.A. 113 pp.14733 - 14738 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.229R free:0.265

NDB ID:

5LEK

PDB ID:

5LEK 

Release:

2016-12-07

Title:

The Transcriptional Regulator PrfA-G145S mutant from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif

Classification:

TRANSCRIPTION

Authors:

Hall, M., Grundstrom, C., Begum, A., Lindberg, M.J., Sauer, U.H., Almqvist, F., Johansson, J., Sauer-Eriksson, A.E.

Citation:

Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria.
Proc. Natl. Acad. Sci. U.S.A. 113 pp.14733 - 14738 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.231R free:0.266

NDB ID:

5LRS

PDB ID:

5LRS 

Release:

2016-12-07

Title:

The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with glutathione and a 30-bp operator PrfA-box motif

Classification:

TRANSCRIPTION

Authors:

Hall, M., Grundstrom, C., Begum, A., Lindberg, M.J., Sauer, U.H., Almqvist, F., Johansson, J., Sauer-Eriksson, A.E.

Citation:

Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria.
Proc. Natl. Acad. Sci. U.S.A. 113 pp.14733 - 14738 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.248R free:0.279

NDB ID:

5TZV

PDB ID:

5TZV 

Release:

2016-12-07

Title:

Binary complex crystal structure of DNA Polymerase Beta with G:T mismatch at the primer terminus

Classification:

Transferase/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.173R free:0.229