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As of 15-Apr-2015 number of released structures: 7477
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5060  Download results as an excel file       Gallery view

NDB ID:

4XZF

PDB ID:

4XZF 

Release:

2015-04-15

Title:

Crystal structure of HIRAN domain of human HLTF in complex with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hishiki, A., Hara, K., Ikegaya, Y., Yokoyama, H., Shimizu, T., Sato, M., Hashimoto, H.

Citation:

Structure of a Novel DNA-binding Domain of Helicase-like Transcription Factor (HLTF) and Its Functional Implication in DNA Damage Tolerance
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.38Å R work:0.164R free:0.206

NDB ID:

NA3280

PDB ID:

4RPX 

Release:

2015-04-15

Title:

Precatalytic ternary complex of Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG) and dCTP in the presence of CaCl2

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.188R free:0.226

NDB ID:

NA3281

PDB ID:

4RPY 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dCTP soaked with MgCl2 for 30 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.189R free:0.229

NDB ID:

NA3282

PDB ID:

4RPZ 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dCTP soaked with MgCl2 for 60 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.19Å R work:0.195R free:0.251

NDB ID:

NA3283

PDB ID:

4RQ0 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dCTP soaked with MgCl2 for 80 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.207R free:0.268

NDB ID:

NA3284

PDB ID:

4RQ1 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dCTP soaked with MgCl2 for 1hr

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.203R free:0.28

NDB ID:

NA3285

PDB ID:

4RQ2 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dCTP soaked with MnCl2 for 35 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.194R free:0.268

NDB ID:

NA3286

PDB ID:

4RQ3 

Release:

2015-04-15

Title:

Precatalytic ternary complex of Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG) and dATP in the presence of CaCl2

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.191R free:0.245

NDB ID:

NA3287

PDB ID:

4RQ4 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dATP soaked with MgCl2 for 30 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.189R free:0.243

NDB ID:

NA3289

PDB ID:

4RQ5 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dATP soaked with MgCl2 for 60 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.32Å R work:0.196R free:0.265

NDB ID:

NA3290

PDB ID:

4RQ6 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dATP soaked with MgCl2 for 80 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.197R free:0.252

NDB ID:

NA3291

PDB ID:

4RQ7 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dATP soaked with MgCl2 for 1hr

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.206R free:0.26

NDB ID:

NA3293

PDB ID:

4RQ8 

Release:

2015-04-15

Title:

Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dATP soaked with MnCl2 for 35 s

Classification:

TRANSFERASE/DNA

Authors:

Vyas, R., Reed, A.J., Tokarsky, E.J., Suo, Z.

Citation:

Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.206R free:0.27

NDB ID:

NA3301

PDB ID:

4RTJ 

Release:

2015-04-15

Title:

A non-cognate complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with DNA and Sinefungin

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.99Å R work:0.214R free:0.236

NDB ID:

NA3302

PDB ID:

4RTK 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with SAH and with DNA Containing Distal Pap Regulon Sequence

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.96Å R work:0.21R free:0.223

NDB ID:

NA3303

PDB ID:

4RTN 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoHcy and with DNA Containing Proximal Pap Regulon Sequence

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.59Å R work:0.205R free:0.239

NDB ID:

NA3304

PDB ID:

4RTL 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with Sinefungin and with DNA Containing Distal Pap Regulon Sequence

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.193Å R work:0.203R free:0.252

NDB ID:

NA3305

PDB ID:

4RTM 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and with DNA Containing Distal Pap Regulon Sequence

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.207R free:0.236

NDB ID:

NA3306

PDB ID:

4RTO 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with Sinefungin and with DNA Containing Proximal Pap Regulon Sequence

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.69Å R work:0.217R free:0.249

NDB ID:

NA3307

PDB ID:

4RTP 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and with DNA Containing Proximal Pap Regulon Sequence

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.39Å R work:0.216R free:0.248

NDB ID:

NA3308

PDB ID:

4RTQ 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoHcy and a 5-bp non-canonical site (GTTTA )

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.997Å R work:0.16R free:0.195

NDB ID:

NA3309

PDB ID:

4RTR 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and a 5-bp non-canonical site (GTTTA )

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.393Å R work:0.176R free:0.226

NDB ID:

NA3310

PDB ID:

4RTS 

Release:

2015-04-15

Title:

Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and a 5-bp non-canonical site (GTCTA)

Classification:

Transferase/DNA

Authors:

Horton, J.R., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.49Å R work:0.174R free:0.214

NDB ID:

NA3028

PDB ID:

3WVG 

Release:

2015-04-08

Title:

Time-Resolved Crystal Structure of HindIII with 0sec soaking

Classification:

HYDROLASE/DNA

Authors:

Kawamura, T., Kobayashi, T., Watanabe, N.

Citation:

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D 71 pp.256 - 265 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.177R free:0.226

NDB ID:

NA3029

PDB ID:

3WVH 

Release:

2015-04-08

Title:

Time-Resolved Crystal Structure of HindIII with 25sec soaking

Classification:

HYDROLASE/DNA

Authors:

Kawamura, T., Kobayashi, T., Watanabe, N.

Citation:

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D 71 pp.256 - 265 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.54Å R work:0.176R free:0.24

NDB ID:

NA3030

PDB ID:

3WVI 

Release:

2015-04-08

Title:

Time-Resolved Crystal Structure of HindIII with 40 sec soaking

Classification:

HYDROLASE/DNA

Authors:

Kawamura, T., Kobayashi, T., Watanabe, N.

Citation:

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D 71 pp.256 - 265 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.172R free:0.233

NDB ID:

NA3031

PDB ID:

3WVK 

Release:

2015-04-08

Title:

Time-Resolved Crystal Structure of HindIII with 230sec soaking

Classification:

HYDROLASE/DNA

Authors:

Kawamura, T., Kobayashi, T., Watanabe, N.

Citation:

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D 71 pp.256 - 265 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.178R free:0.225

NDB ID:

NA3032

PDB ID:

3WVP 

Release:

2015-04-08

Title:

Time-Resolved Crystal Structure of HindIII with 60sec soaking

Classification:

HYDROLASE/DNA

Authors:

Kawamura, T., Kobayashi, T., Watanabe, N.

Citation:

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D 71 pp.256 - 265 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.181R free:0.23

NDB ID:

4PCZ

PDB ID:

4PCZ 

Release:

2015-04-01

Title:

Crystal structure of a complex between R247G LlFPG mutant and a THF containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.156R free:0.181

NDB ID:

4PD2

PDB ID:

4PD2 

Release:

2015-04-01

Title:

Crystal structure of a complex between a C248GH LlFpg mutant and a THF containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.152R free:0.178

NDB ID:

4PDG

PDB ID:

4PDG 

Release:

2015-04-01

Title:

Crystal structure of a complex between an inhibited LlFpg and a THF containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.163R free:0.192

NDB ID:

4PDI

PDB ID:

4PDI 

Release:

2015-04-01

Title:

Crystal structure of a complex between an inhibited LlFpg and a N7-Benzyl-Fapy-dG containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.159R free:0.19

NDB ID:

4U9M

PDB ID:

4U9M 

Release:

2015-04-01

Title:

Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds

Classification:

DNA

Authors:

Acosta-Reyes, F.J., Alechaga, E., Subirana, J.A., Campos, J.L.

Citation:

Structure of the DNA Duplex d(ATTAAT)2 with Hoogsteen Hydrogen Bonds.
Plos One 10 pp.e0120241 - e0120241 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.13Å R work:0.145R free:0.199

NDB ID:

4P1D

PDB ID:

4P1D 

Release:

2015-03-18

Title:

Structure of the complex of a bimolecular human telomeric DNA with Coptisine

Classification:

DNA

Authors:

Ferraroni, M., Bazzicalupi, C., Gratteri, P., Bilia, A.R., Sissi, C.

Citation:

Crystal Structure of the complex of a bimolecular human telomeric DNA with Coptisine
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.231R free:0.258

NDB ID:

4X0P

PDB ID:

4X0P 

Release:

2015-03-18

Title:

Ternary complex of human DNA polymerase theta C-terminal domain binding ddATP opposite a tetrahydrofuran AP site analog

Classification:

Transferase/DNA

Authors:

Zahn, K.E., Averill, A.M., Aller, P., Wood, R.D., Doublie, S.

Citation:

Human DNA polymerase theta grasps the primer terminus to mediate DNA repair.
Nat.Struct.Mol.Biol. 22 pp.304 - 311 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.911Å R work:0.24R free:0.301

NDB ID:

4X0Q

PDB ID:

4X0Q 

Release:

2015-03-18

Title:

Ternary complex of human DNA polymerase theta C-terminal domain binding ddGTP opposite dCMP

Classification:

Transferase/DNA

Authors:

Zahn, K.E., Averill, A.M., Aller, P., Wood, R.D., Doublie, S.

Citation:

Human DNA polymerase theta grasps the primer terminus to mediate DNA repair.
Nat.Struct.Mol.Biol. 22 pp.304 - 311 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.9Å R work:0.257R free:0.316

NDB ID:

NA3363

PDB ID:

4USG 

Release:

2015-03-18

Title:

Crystal structure of PC4 W89Y mutant complex with DNA

Classification:

TRANSCRIPTION

Authors:

Huang, J., Zhao, Y., Liu, H., Huang, D., Cheng, X., Zhao, W., Taylor, I.A., Liu, J., Peng, Y.L.

Citation:

Substitution of Tryptophan 89 with Tyrosine Switches the DNA Binding Mode of Pc4.
Sci.Rep. 5 pp.8789 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.973Å R work:0.185R free:0.211

NDB ID:

4TMU

PDB ID:

4TMU 

Release:

2015-03-11

Title:

Crystal structure of RecQ catalytic core from C. sakazakii bound to DNA

Classification:

Hydrolase/DNA

Authors:

Manthei, K.A., Hill, M.C., Burke, J.E., Butcher, S.E., Keck, J.L.

Citation:

Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases.
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.178R free:0.232

NDB ID:

4X4B

PDB ID:

4X4B 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 2.1 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.204R free:0.261

NDB ID:

4X4C

PDB ID:

4X4C 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 6.2 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.279

NDB ID:

4X4D

PDB ID:

4X4D 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 10.3 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.234R free:0.282

NDB ID:

4X4E

PDB ID:

4X4E 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 14.4 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.239R free:0.284

NDB ID:

4X4F

PDB ID:

4X4F 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 20.6 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.236R free:0.281

NDB ID:

4X4G

PDB ID:

4X4G 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 26.8 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.274

NDB ID:

4X4H

PDB ID:

4X4H 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 35.7 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.245R free:0.292

NDB ID:

4X4I

PDB ID:

4X4I 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 44.6 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.263R free:0.295

NDB ID:

4XVI

PDB ID:

4XVI 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain ajar

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. 22 pp.298 - 303 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.213R free:0.236

NDB ID:

4XVK

PDB ID:

4XVK 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain closed

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. 22 pp.298 - 303 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.222R free:0.241

NDB ID:

4XVL

PDB ID:

4XVL 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain open

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. 22 pp.298 - 303 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.301Å R work:0.202R free:0.223

NDB ID:

4XVM

PDB ID:

4XVM 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain closed and thumb domain rotated out

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. 22 pp.298 - 303 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.242R free:0.281