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As of 26-Aug-2015 number of released structures: 7692
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5192  Download results as an excel file       Gallery view

NDB ID:

4WZS

PDB ID:

4WZS 

Release:

2015-08-26

Title:

Crystal structure of the Mot1 N-terminal domain in complex with TBP and NC2 bound to a promoter DNA fragment

Classification:

TRANSCRIPTION

Authors:

Butryn, A., Schuller, J.M., Stoehr, G., Runge-Wollmann, P., Forster, F., Auble, D.T., Hopfner, K.P.

Citation:

Structural basis for recognition and remodeling of the TBP:DNA:NC2 complex by Mot1.
Elife 4 pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.78Å R work:0.235R free:0.257

NDB ID:

4XR0

PDB ID:

4XR0 

Release:

2015-08-26

Title:

Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- G/T mismatch.

Classification:

REPLICATION/DNA

Authors:

Elshenawy, M.M., Jergic, S., Xu, Z.-Q., Sobhy, M., Takahashi, M., Oakley, A.J., Dixon, N.E., Hamdan, S.M.

Citation:

Replisome speed determines the efficiency of the Tus-Ter replication termination barrier
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.217R free:0.295

NDB ID:

4XR1

PDB ID:

4XR1 

Release:

2015-08-26

Title:

Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- AG/AT mismatch.

Classification:

REPLICATION/DNA

Authors:

Elshenawy, M.M., Jergic, S., Xu, Z.-Q., Sobhy, M., Takahashi, M., Oakley, A.J., Dixon, N.E., Hamdan, S.M.

Citation:

Replisome speed determines the efficiency of the Tus-Ter replication termination barrier
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.197R free:0.268

NDB ID:

4XR2

PDB ID:

4XR2 

Release:

2015-08-26

Title:

Escherichia Coli Replication Terminator Protein (Tus) H114A mutant Complexed With DNA- TerA lock.

Classification:

REPLICATION/DNA

Authors:

Elshenawy, M.M., Jergic, S., Xu, Z.-Q., Sobhy, M., Takahashi, M., Oakley, A.J., Dixon, N.E., Hamdan, S.M.

Citation:

Replisome speed determines the efficiency of the Tus-Ter replication termination barrier
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.219R free:0.265

NDB ID:

4XR3

PDB ID:

4XR3 

Release:

2015-08-26

Title:

Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- GC(6) swapped.

Classification:

REPLICATION/DNA

Authors:

Elshenawy, M.M., Jergic, S., Xu, Z.-Q., Sobhy, M., Takahashi, M., Oakley, A.J., Dixon, N.E., Hamdan, S.M.

Citation:

Replisome speed determines the efficiency of the Tus-Ter replication termination barrier
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.284

NDB ID:

5C3E

PDB ID:

5C3E 

Release:

2015-08-26

Title:

Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble

Classification:

TRANSFERASE/DNA/RNA

Authors:

Barnes, C.O., Calero, M., Malik, I., Graham, B.W., Spahr, H., Lin, G., Cohen, A.E., Brown, I.S., Zhang, Q., Pullara, F., Trakselis, M.A., Kaplan, C.D., Calero, G.

Citation:

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell 59 pp.258 - 269 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.2R free:0.219

NDB ID:

5C44

PDB ID:

5C44 

Release:

2015-08-26

Title:

Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble

Classification:

TRANSFERASE/DNA/RNA

Authors:

Barnes, C.O., Calero, M., Malik, I., Graham, B.W., Spahr, H., Lin, G., Cohen, A.E., Brown, I.S., Zhang, Q., Pullara, F., Trakselis, M.A., Kaplan, C.D., Calero, G.

Citation:

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell 59 pp.258 - 269 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.95Å R work:0.215R free:0.236

NDB ID:

5C4A

PDB ID:

5C4A 

Release:

2015-08-26

Title:

Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble

Classification:

TRANSFERASE/RNA/DNA

Authors:

Barnes, C.O., Calero, M., Malik, I., Graham, B.W., Spahr, H., Lin, G., Cohen, A.E., Brown, I.S., Zhang, Q., Pullara, F., Trakselis, M.A., Kaplan, C.D., Calero, G.

Citation:

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell 59 pp.258 - 269 2015

Experiment:

X-RAY DIFFRACTION Resolution:4.2Å R work:0.223R free:0.242

NDB ID:

5C4J

PDB ID:

5C4J 

Release:

2015-08-26

Title:

Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble

Classification:

TRANSFERASE/DNA/RNA

Authors:

Barnes, C.O., Calero, M., Malik, I., Graham, B.W., Spahr, H., Lin, G., Cohen, A.E., Brown, I.S., Zhang, Q., Pullara, F., Trakselis, M.A., Kaplan, C.D., Calero, G.

Citation:

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell 59 pp.258 - 269 2015

Experiment:

X-RAY DIFFRACTION Resolution:4.0Å R work:0.212R free:0.27

NDB ID:

5C4X

PDB ID:

5C4X 

Release:

2015-08-26

Title:

Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble

Classification:

TRANSFERASE/RNA/DNA

Authors:

Barnes, C.O., Calero, M., Malik, I., Graham, B.W., Spahr, H., Lin, G., Cohen, A.E., Brown, I.S., Zhang, Q., Pullara, F., Trakselis, M.A., Kaplan, C.D., Calero, G.

Citation:

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell 59 pp.258 - 269 2015

Experiment:

X-RAY DIFFRACTION Resolution:4.0Å R work:0.209R free:0.227

NDB ID:

2N0Q

PDB ID:

2N0Q 

Release:

2015-08-19

Title:

N2-dG-IQ modified DNA at the G1 position of the NarI recognition sequence

Classification:

DNA

Authors:

Stavros, K.M., Hawkins, E.K., Rizzo, C.J., Stone, M.P.

Citation:

Base-Displaced Intercalated Conformation of the 2-Amino-3-methylimidazo[4,5-f]quinoline N(2)-dG DNA Adduct Positioned at the Nonreiterated G(1) in the NarI Restriction Site.
Chem.Res.Toxicol. 28 pp.1455 - 1468 2015

Experiment:

SOLUTION NMR

NDB ID:

4U6K

PDB ID:

4U6K 

Release:

2015-08-19

Title:

Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC

Classification:

DNA/RNA

Authors:

Kondo, J., Nomura, Y., Kitahara, Y., Obika, S., Torigoe, H.

Citation:

Crystal structure of DNA/RNA duplex containing 2',4'-BNA-NC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.198R free:0.215

NDB ID:

4U6L

PDB ID:

4U6L 

Release:

2015-08-19

Title:

Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2

Classification:

DNA/RNA

Authors:

Kondo, J., Nomura, Y., Kitahara, Y., Obika, S., Torigoe, H.

Citation:

Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.25R free:0.275

NDB ID:

4U6M

PDB ID:

4U6M 

Release:

2015-08-19

Title:

Crystal structure of DNA/RNA duplex obtained in the presence of Spermine

Classification:

DNA/RNA

Authors:

Kondo, J., Nomura, Y., Kitahara, Y., Obika, S., Torigoe, H.

Citation:

Crystal structure of DNA/RNA duplex obtained in the presence of Spermine
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.206R free:0.233

NDB ID:

5BOL

PDB ID:

5BOL 

Release:

2015-08-19

Title:

DNA polymerase beta ternary complex with a templating 5ClC and incoming dGTP analog

Classification:

TRANSFERASE/DNA

Authors:

Fedeles, B.I., Freudenthal, B.D., Yau, E., Singh, V., Chang, S.C., Li, D., Delaney, J.C., Wilson, S.H., Essigmann, J.M.

Citation:

Intrinsic mutagenic properties of 5-chlorocytosine: A mechanistic connection between chronic inflammation and cancer.
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.981Å R work:0.189R free:0.246

NDB ID:

5BOM

PDB ID:

5BOM 

Release:

2015-08-19

Title:

DNA polymerase beta binary complex with a templating 5ClC

Classification:

TRANSFERASE, LYASE/DNA

Authors:

Fedeles, B.I., Freudenthal, B.D., Yau, E., Singh, V., Chang, S.C., Li, D., Delaney, J.C., Wilson, S.H., Essigmann, J.M.

Citation:

Intrinsic mutagenic properties of 5-chlorocytosine: A mechanistic connection between chronic inflammation and cancer.
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0002Å R work:0.189R free:0.213

NDB ID:

5BPC

PDB ID:

5BPC 

Release:

2015-08-19

Title:

DNA polymerase beta ternary complex with a templating 5ClC and incoming dATP analog

Classification:

Transferase, ligase/DNA

Authors:

Fedeles, B.I., Freudenthal, B.D., Yau, E., Singh, V., Chang, S.C., Li, D., Delaney, J.C., Wilson, S.H., Essigmann, J.M.

Citation:

Intrinsic mutagenic properties of 5-chlorocytosine: A mechanistic connection between chronic inflammation and cancer.
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.21R free:0.259

NDB ID:

4ZPK

PDB ID:

4ZPK 

Release:

2015-08-12

Title:

Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with HRE DNA

Classification:

PROTEIN TRANSPORT/TRANSCRIPTION/DNA

Authors:

Wu, D., Potluri, N., Lu, J., Kim, Y., Rastinejad, F.

Citation:

Structural integration in hypoxia-inducible factors.
Nature 524 pp.303 - 308 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.234R free:0.321

NDB ID:

4ZPR

PDB ID:

4ZPR 

Release:

2015-08-12

Title:

Crystal Structure of the Heterodimeric HIF-1a:ARNT Complex with HRE DNA

Classification:

PROTEIN TRANSPORT/TRANSCRIPTION/DNA

Authors:

Wu, D., Potluri, N., Lu, J., Kim, Y., Rastinejad, F.

Citation:

Structural integration in hypoxia-inducible factors.
Nature 524 pp.303 - 308 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.902Å R work:0.264R free:0.34

NDB ID:

4ZYD

PDB ID:

4ZYD 

Release:

2015-08-12

Title:

Crystal structure of Sulfolobus solfataricus O6-methylguanine methyltransferase in complex with modified DNA

Classification:

TRANSFERASE

Authors:

Perugino, G., Miggiano, R., Serpe, M., Vettone, A., Valenti, A., Lahiri, S., Rossi, F., Rossi, M., Rizzi, M., Ciaramella, M.

Citation:

Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.682Å R work:0.213R free:0.271

NDB ID:

NA3374

PDB ID:

4UQM 

Release:

2015-08-12

Title:

Crystal structure determination of uracil-DNA N-glycosylase (UNG) from Deinococcus radiodurans in complex with DNA - new insights into the role of the Leucine-loop for damage recognition and repair

Classification:

HYDROLASE/DNA

Authors:

Pedersen, H.L., Johnson, K.A., Leiros, I., Moe, E.

Citation:

Crystal Structure Determination of Uracil-DNA N-Glycosylase (Ung) from Deinococcus Radiodurans in Complex with DNA - New Insights Into the Role of the Leucine-Loop for Damage Recognition and Repair
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.35Å R work:0.182R free:0.21

NDB ID:

4YCX

PDB ID:

4YCX 

Release:

2015-08-05

Title:

Binary complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate

Classification:

transferase/DNA

Authors:

Moon, A.F., Gosavi, R.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Creative template-dependent synthesis by human polymerase mu.
Proc.Natl.Acad.Sci.USA 112 pp.E4530 - E4536 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.201R free:0.233

NDB ID:

4YD1

PDB ID:

4YD1 

Release:

2015-08-05

Title:

Ternary complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate and an incoming nonhydrolyzable dUMPNPP

Classification:

transferase/dna

Authors:

Moon, A.F., Gosavi, R.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Creative template-dependent synthesis by human polymerase mu.
Proc.Natl.Acad.Sci.USA 112 pp.E4530 - E4536 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.163R free:0.189

NDB ID:

4YD2

PDB ID:

4YD2 

Release:

2015-08-05

Title:

Nicked complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate

Classification:

transferase/dna

Authors:

Moon, A.F., Gosavi, R.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Creative template-dependent synthesis by human polymerase mu.
Proc.Natl.Acad.Sci.USA 112 pp.E4530 - E4536 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.471Å R work:0.212R free:0.242

NDB ID:

NA3159

PDB ID:

4R55 

Release:

2015-08-05

Title:

The crystal structure of a Cren7 mutant protein GR and dsDNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhang, Z.F., Gong, Y., Chen, Y.Y., Li, H.B., Huang, L.

Citation:

Insights into the interaction between Cren7 and DNA: the role of loop beta 3-beta 4
Extremophiles 19 pp.395 - 406 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.218R free:0.252

NDB ID:

NA3160

PDB ID:

4R56 

Release:

2015-08-05

Title:

Crystal structure of Sulfolobus Cren7-dsDNA(GTGATCAC) complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhang, Z.F., Gong, Y., Chen, Y.Y., Li, H.B., Huang, L.

Citation:

Insights into the interaction between Cren7 and DNA: the role of loop beta 3-beta 4
Extremophiles 19 pp.395 - 406 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.2R free:0.231

NDB ID:

NA3312

PDB ID:

4RU9 

Release:

2015-08-05

Title:

Crystal structure of human DNA polymerase eta inserting dCMPNPP opposite a MeFapy-dG adducted DNA template

Classification:

TRANSFERASE/DNA

Authors:

Patra, A., Banerjee, S., Johnson Salyard, T.L., Malik, C.K., Christov, P.P., Rizzo, C.J., Stone, M.P., Egli, M.

Citation:

Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase eta and Sulfolobus solfataricus P2 Polymerase IV.
J.Am.Chem.Soc. 137 pp.7011 - 7014 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.158R free:0.229

NDB ID:

NA3313

PDB ID:

4RUA 

Release:

2015-08-05

Title:

Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adduct

Classification:

TRANSFERASE/DNA

Authors:

Patra, A., Banerjee, S., Johnson Salyard, T.L., Malik, C.K., Christov, P.P., Rizzo, C.J., Stone, M.P., Egli, M.

Citation:

Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase eta and Sulfolobus solfataricus P2 Polymerase IV.
J.Am.Chem.Soc. 137 pp.7011 - 7014 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.07Å R work:0.163R free:0.258

NDB ID:

NA3315

PDB ID:

4RUC 

Release:

2015-08-05

Title:

Crystal structure of Y-family DNA polymerase Dpo4 extending from a MeFapy-dG:dC pair

Classification:

TRANSFERASE/DNA

Authors:

Patra, A., Banerjee, S., Johnson Salyard, T.L., Malik, C.K., Christov, P.P., Rizzo, C.J., Stone, M.P., Egli, M.

Citation:

Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase eta and Sulfolobus solfataricus P2 Polymerase IV.
J.Am.Chem.Soc. 137 pp.7011 - 7014 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.171R free:0.235

NDB ID:

2N21

PDB ID:

2N21 

Release:

2015-07-29

Title:

Solution structure of complex between DNA G-quadruplex and G-quadruplex recognition domain of RHAU

Classification:

HYDROLASE/DNA

Authors:

Heddi, B., Cheong, V.V., Martadinata, H., Phan, A.T.

Citation:

Insights into G-quadruplex specific recognition by the DEAH-box helicase RHAU: Solution structure of a peptide-quadruplex complex.
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

4YG1

PDB ID:

4YG1 

Release:

2015-07-29

Title:

HipB-O1-O2 complex/P21212 crystal form

Classification:

TRANSCRIPTION/DNA

Authors:

Schumacher, M.A., Balani, P., Min, J., Chinnam, N.B., Hansen, S., Vulic, M., Lewis, K., Brennan, R.G.

Citation:

HipBA-promoter structures reveal the basis of heritable multidrug tolerance.
Nature 524 pp.59 - 64 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.246R free:0.287

NDB ID:

4YG4

PDB ID:

4YG4 

Release:

2015-07-29

Title:

HipB-O1-O1* complex

Classification:

TRANSCRIPTION/DNA

Authors:

Schumacher, M.A., Balani, P., Min, J., Chinnam, N.B., Hansen, S., Vulic, M., Lewis, K., Brennan, R.G.

Citation:

HipBA-promoter structures reveal the basis of heritable multidrug tolerance.
Nature 524 pp.59 - 64 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.266R free:0.289

NDB ID:

4YG7

PDB ID:

4YG7 

Release:

2015-07-29

Title:

Structure of FL autorepression promoter complex

Classification:

TRANSCRIPTION, TRANSFERASE/DNA

Authors:

Schumacher, M.A., Balani, P., Min, J., Chinnam, N.B., Hansen, S., Vulic, M., Lewis, K., Brennan, R.G.

Citation:

HipBA-promoter structures reveal the basis of heritable multidrug tolerance.
Nature 524 pp.59 - 64 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.77Å R work:0.383R free:0.378

NDB ID:

NA3107

PDB ID:

4QTR 

Release:

2015-07-29

Title:

Computational design of co-assembling protein-DNA nanowires

Classification:

de novo design/DNA

Authors:

Mou, Y., Yu, J.Y., Wannier, T.M., Zwang, T.J., Guo, C.L., Mayo, S.L.

Citation:

Computational design of co-assembling protein-DNA nanowires
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.263R free:0.321

NDB ID:

4TZD

PDB ID:

4TZD 

Release:

2015-07-22

Title:

Crystal structure of Canavalia maritima lectin (ConM) complexed with interleukin - 1 beta primer

Classification:

Carbohydrate binding protein/DNA

Authors:

Vieira, D.B.H.A., Delatorre, P., Cavada, B.S., Nobrega, R.B., Teixeira, C.S., Silva-Filho, J.C., Lima, E.M., Rocha, B.A.M.

Citation:

Crystal structure of Canavalia maritima lectin (ConM) complexed with interleukin 1 - beta primer
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.247R free:0.314

NDB ID:

4YFU

PDB ID:

4YFU 

Release:

2015-07-22

Title:

Crystal structure of open Bacillus fragment DNA polymerase bound to DNA and dTTP

Classification:

Transferase/DNA

Authors:

Miller, B.R., Beese, L.S., Parish, C.A., Wu, E.Y.

Citation:

The Closing Mechanism of DNA Polymerase I at Atomic Resolution.
Structure pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.194R free:0.23

NDB ID:

NA3055

PDB ID:

4QLC 

Release:

2015-07-22

Title:

Crystal structure of chromatosome at 3.5 angstrom resolution

Classification:

CHROMATIN BINDING PROTEIN/DNA

Authors:

Zhou, B.R., Jiang, J., Feng, H., Ghirlando, R., Xiao, T.S., Bai, Y.

Citation:

Structural Mechanisms of Nucleosome Recognition by Linker Histones.
Mol.Cell 33 Suppl 1 pp.2 - 3 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.503Å R work:0.218R free:0.243

NDB ID:

4Y52

PDB ID:

4Y52 

Release:

2015-07-15

Title:

Crystal structure of 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation.

Classification:

transcription/dna/rna

Authors:

Wang, L., Zhou, Y., Xu, L., Xiao, R., Lu, X., Chen, L., Chong, J., Li, H., He, C., Fu, X.D., Wang, D.

Citation:

Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
Nature 523 pp.621 - 625 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.201R free:0.232

NDB ID:

4Y7N

PDB ID:

4Y7N 

Release:

2015-07-15

Title:

The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation.

Classification:

transcription/dna/rna

Authors:

Wang, L., Zhou, Y., Xu, L., Xiao, R., Lu, X., Chen, L., Chong, J., Li, H., He, C., Fu, X.D., Wang, D.

Citation:

Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
Nature 523 pp.621 - 625 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.206R free:0.249

NDB ID:

4YOV

PDB ID:

4YOV 

Release:

2015-07-15

Title:

Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA

Classification:

HYDROLASE/DNA

Authors:

Miyazono, K.I., Ishino, S., Tsutsumi, K., Ito, T., Ishino, Y., Tanokura, M.

Citation:

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.19R free:0.232

NDB ID:

4YOW

PDB ID:

4YOW 

Release:

2015-07-15

Title:

Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dC

Classification:

HYDROLASE/DNA

Authors:

Miyazono, K.I., Ishino, S., Tsutsumi, K., Ito, T., Ishino, Y., Tanokura, M.

Citation:

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.202R free:0.24

NDB ID:

4YOX

PDB ID:

4YOX 

Release:

2015-07-15

Title:

Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT

Classification:

HYDROLASE/DNA

Authors:

Miyazono, K.I., Ishino, S., Tsutsumi, K., Ito, T., Ishino, Y., Tanokura, M.

Citation:

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.178R free:0.207

NDB ID:

4YOY

PDB ID:

4YOY 

Release:

2015-07-15

Title:

Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT and Mg2+ ion

Classification:

HYDROLASE/DNA

Authors:

Miyazono, K.I., Ishino, S., Tsutsumi, K., Ito, T., Ishino, Y., Tanokura, M.

Citation:

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.18R free:0.204

NDB ID:

NA3165

PDB ID:

4RB1 

Release:

2015-07-15

Title:

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Deng, Z., Wang, Q., Liu, Z., Zhang, M., Machado, A.C., Chiu, T.P., Feng, C., Zhang, Q., Yu, L., Qi, L., Zheng, J., Wang, X., Huo, X., Qi, X., Li, X., Wu, W., Rohs, R., Li, Y., Chen, Z.

Citation:

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator.
Nat Commun 6 pp.7642 - 7642 0

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.225R free:0.249

NDB ID:

NA3166

PDB ID:

4RB3 

Release:

2015-07-15

Title:

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Deng, Z., Wang, Q., Liu, Z., Zhang, M., Machado, A.C., Chiu, T.P., Feng, C., Zhang, Q., Yu, L., Qi, L., Zheng, J., Wang, X., Huo, X., Qi, X., Li, X., Wu, W., Rohs, R., Li, Y., Chen, Z.

Citation:

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator.
Nat Commun 6 pp.7642 - 7642 0

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.232R free:0.264

NDB ID:

NA3167

PDB ID:

4RB2 

Release:

2015-07-15

Title:

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Fur-Mn2+-feoAB1 operator

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Deng, Z., Wang, Q., Liu, Z., Zhang, M., Machado, A.C., Chiu, T.P., Feng, C., Zhang, Q., Yu, L., Qi, L., Zheng, J., Wang, X., Huo, X., Qi, X., Li, X., Wu, W., Rohs, R., Li, Y., Chen, Z.

Citation:

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator.
Nat Commun 6 pp.7642 - 7642 0

Experiment:

X-RAY DIFFRACTION Resolution:2.82Å R work:0.238R free:0.275

NDB ID:

NA3224

PDB ID:

4RHD 

Release:

2015-07-08

Title:

DNA Duplex with Novel ZP Base Pair

Classification:

DNA

Authors:

Zhang, L., Yang, Z., Sefah, K., Bradley, K.M., Hoshika, S., Kim, M.J., Kim, H.J., Zhu, G., Jimenez, E., Cansiz, S., Teng, I.T., Champanhac, C., McLendon, C., Liu, C., Zhang, W., Gerloff, D.L., Huang, Z., Tan, W., Benner, S.A.

Citation:

Evolution of functional six-nucleotide DNA.
J.Am.Chem.Soc. 137 pp.6734 - 6737 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.223R free:0.226

NDB ID:

2MXF

PDB ID:

2MXF 

Release:

2015-07-01

Title:

Structure of the DNA complex of the C-Terminal domain of MvaT

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Ding, P., McFarland, K.A., Jin, S., Tong, G., Duan, B., Yang, A., Hughes, T.R., Liu, J., Dove, S.L., Navarre, W.W., Xia, B.

Citation:

A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT.
Plos Pathog. 11 pp.e1004967 - e1004967 2015

Experiment:

SOLUTION NMR

NDB ID:

NA3052

PDB ID:

4QNO 

Release:

2015-07-01

Title:

Crystal structure of CCG DNA repeats at 1.66 angstrom resolution

Classification:

DNA

Authors:

Chen, Y.W., Jhan, C.R., Hou, M.H.

Citation:

A 1.66 angstrom resulotion of Crystal structure of CCG DNA repeats
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.66Å R work:0.246R free:0.261

NDB ID:

NA3128

PDB ID:

4QR9 

Release:

2015-07-01

Title:

Crystal structure of two HMGB1 Box A domains cooperating to underwind and kink a DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sanchez-Giraldo, R., Acosta-Reyes, F.J., Malarkey, C.S., Saperas, N., Churchill, M.E., Campos, J.L.

Citation:

Two high-mobility group box domains act together to underwind and kink DNA.
Acta Crystallogr.,Sect.D 71 pp.1423 - 1432 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.196R free:0.233