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As of 13-Dec-2017 number of released structures: 9265
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6256  Download results as an excel file       Gallery view

NDB ID:

5O6B

PDB ID:

5O6B 

Release:

2017-12-13

Title:

Structure of ScPif1 in complex with GGGTTTT and ADP-AlF4

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.029Å R work:0.192R free:0.237

NDB ID:

5O6D

PDB ID:

5O6D 

Release:

2017-12-13

Title:

Structure of ScPif1 in complex with polydT and ATPgS

Classification:

HYDROLASE

Authors:

Lu, K.Y., Chen, W.F., Rety, S., Liu, N.N., Wu, W.Q., Dai, Y.X., Li, D., Ma, H.Y., Dou, S.X., Xi, X.G.

Citation:

Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.283Å R work:0.251R free:0.321

NDB ID:

5W2M

PDB ID:

5W2M 

Release:

2017-12-13

Title:

APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA

Classification:

DNA BINDING PROTEIN

Authors:

Fang, Y., Xiao, X., Li, S., Wolfe, A., Chen, X.S.

Citation:

Molecular Interactions of APOBEC3F Catalytic Domain with a Single-Stranded DNA.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.249R free:0.266

NDB ID:

6F58

PDB ID:

6F58 

Release:

2017-12-13

Title:

Crystal structure of human Brachyury (T) in complex with DNA

Classification:

TRANSCRIPTION

Authors:

Newman, J.A., Gavard, A.E., Krojer, T., Shrestha, L., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Crystal structure of human Brachyury (T) in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.253Å R work:0.242R free:0.287

NDB ID:

6F59

PDB ID:

6F59 

Release:

2017-12-13

Title:

Crystal structure of human Brachyury (T) G177D variant in complex with DNA

Classification:

TRANSCRIPTION

Authors:

Newman, J.A., Gavard, A.E., Krojer, T., Shrestha, L., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Crystal structure of human Brachyury (T) G177D variant in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.151Å R work:0.221R free:0.252

NDB ID:

5O6G

PDB ID:

5O6G 

Release:

2017-12-06

Title:

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI

Classification:

DNA BINDING PROTEIN

Authors:

Alba, J., Marcaida, M.J., Prieto, J., Montoya, G., Molina, R., D'Abramo, M.

Citation:

Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI.
J. Comput. Aided Mol. Des. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.177R free:0.232

NDB ID:

5O6I

PDB ID:

5O6I 

Release:

2017-12-06

Title:

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI

Classification:

DNA BINDING PROTEIN

Authors:

Alba, J., Marcaida, M.J., Prieto, J., Montoya, G., Molina, R., D'Abramo, M.

Citation:

Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI.
J. Comput. Aided Mol. Des. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.196R free:0.227

NDB ID:

5OCZ

PDB ID:

5OCZ 

Release:

2017-12-06

Title:

Free DNA_hairpin polyamides studies

Classification:

DNA

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5ODM

PDB ID:

5ODM 

Release:

2017-12-06

Title:

NtiPr polyamide in complex with 5'CGATGTACTACG3

Classification:

DNA

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5OE1

PDB ID:

5OE1 

Release:

2017-12-06

Title:

Im polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies

Classification:

DNA

Authors:

Padroni, G., Parkinson, J.A., Fox, K.R., Burley, G.A.

Citation:

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.
Nucleic Acids Res. pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

5V9X

PDB ID:

5V9X 

Release:

2017-12-06

Title:

Structure of Mycobacterium smegmatis helicase Lhr bound to ssDNA and AMP-PNP

Classification:

HYDROLASE/DNA

Authors:

Ejaz, A., Ordonez, H., Jacewicz, A., Ferrao, R., Shuman, S.

Citation:

Structure of mycobacterial 3'-to-5' RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.797Å R work:0.195R free:0.242

NDB ID:

5VU6

PDB ID:

5VU6 

Release:

2017-12-06

Title:

TNA polymerase binary complex with primer/template duplex

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.235R free:0.282

NDB ID:

5VU7

PDB ID:

5VU7 

Release:

2017-12-06

Title:

TNA polymerase, open ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.72Å R work:0.214R free:0.267

NDB ID:

5VU8

PDB ID:

5VU8 

Release:

2017-12-06

Title:

TNA polymerase, closed ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.257R free:0.294

NDB ID:

5VU9

PDB ID:

5VU9 

Release:

2017-12-06

Title:

TNA polymerase, translocated product

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Shi, C., Sau, S.P., Nikoomanzar, A., Chaput, J.C.

Citation:

Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun 8 pp.1810 - 1810 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.19R free:0.235

NDB ID:

5XJZ

PDB ID:

5XJZ 

Release:

2017-12-06

Title:

Structure of DNA1-Ag complex

Classification:

DNA

Authors:

Liu, H.H., Shen, F.S., Haruehanroengra, P., Yao, Q.Q., Cheng, Y.S., Chen, Y.Q., Yang, C., Zhang, J., Wu, B.X., Luo, Q., Cui, R.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs
Angew. Chem. Int. Ed. Engl. 56 pp.9430 - 9434 2017

Experiment:

X-RAY DIFFRACTION Resolution:0.98Å R work:0.123R free:0.13

NDB ID:

5XK0

PDB ID:

5XK0 

Release:

2017-12-06

Title:

Structure of 8-mer DNA2

Classification:

DNA

Authors:

Liu, H.H., Shen, F.S., Haruehanroengra, P., Yao, Q.Q., Cheng, Y.S., Chen, Y.Q., Yang, C., Zhang, J., Wu, B.X., Luo, Q., Cui, R.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs
Angew. Chem. Int. Ed. Engl. 56 pp.9430 - 9434 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.451Å R work:0.18R free:0.195

NDB ID:

5XK1

PDB ID:

5XK1 

Release:

2017-12-06

Title:

Structure of 8-mer DNA3

Classification:

DNA

Authors:

Liu, H.H., Shen, F.S., Haruehanroengra, P., Yao, Q.Q., Cheng, Y.S., Chen, Y.Q., Yang, C., Zhang, J., Wu, B.X., Luo, Q., Cui, R.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Citation:

A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs.
Angew. Chem. Int. Ed. Engl. 56 pp.9430 - 9434 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.501Å R work:0.162R free:0.195

NDB ID:

5YI2

PDB ID:

5YI2 

Release:

2017-12-06

Title:

Structure of Lactococcus lactis ZitR, wild type in complex with DNA

Classification:

METAL BINDING PROTEIN

Authors:

Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.

Citation:

Structure of Lactococcus lactis ZitR
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.191R free:0.246

NDB ID:

5YI3

PDB ID:

5YI3 

Release:

2017-12-06

Title:

Structure of Lactococcus lactis ZitR, C30S mutant in complex with DNA

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Song, Y., Liu, H., Zhu, R., Yi, C., Chen, P.

Citation:

Structure of Lactococcus lactis ZitR
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.205R free:0.262

NDB ID:

5YJ3

PDB ID:

5YJ3 

Release:

2017-12-06

Title:

Crystal structure of TZAP and telomeric DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhao, Y., Zhang, G., He, C., Mei, Y., Shi, Y., Li, F.

Citation:

The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA.
Cell Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.845Å R work:0.226R free:0.267

NDB ID:

5O7T

PDB ID:

5O7T 

Release:

2017-11-29

Title:

Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a dG:dCTP base pair

Classification:

TRANSFERASE

Authors:

Betz, K., Nilforoushan, A., Wyss, L.A., Diederichs, K., Sturla, S.J., Marx, A.

Citation:

Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase.
Chem. Commun. (Camb.) 53 pp.12704 - 12707 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.176R free:0.234

NDB ID:

5OGA

PDB ID:

5OGA 

Release:

2017-11-29

Title:

Structure of minimal i-motif domain

Classification:

DNA

Authors:

Mir, B., Serrano, I., Buitrago, D., Orozco, M., Escaja, N., Gonzalez, C.

Citation:

Prevalent Sequences in the Human Genome Can Form Mini i-Motif Structures at Physiological pH.
J. Am. Chem. Soc. 139 pp.13985 - 13988 2017

Experiment:

SOLUTION NMR

NDB ID:

5OXJ

PDB ID:

5OXJ 

Release:

2017-11-29

Title:

Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a O6-MeG:BenziTP base pair

Classification:

TRANSFERASE

Authors:

Betz, K., Nilforoushan, A., Wyss, L.A., Diederichs, K., Sturla, S.J., Marx, A.

Citation:

Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase.
Chem. Commun. (Camb.) 53 pp.12704 - 12707 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.196R free:0.257

NDB ID:

5U0Q

PDB ID:

5U0Q 

Release:

2017-11-29

Title:

RNA-DNA heptamer duplex with one 2'-5'-linkage

Classification:

RNA, DNA

Authors:

Luo, Z., Sheng, J., Wang, R.

Citation:

RNA-DNA heptamer duplex with one 2'-5'-linkage
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.43Å R work:0.152R free:0.176

NDB ID:

5YBB

PDB ID:

5YBB 

Release:

2017-11-29

Title:

Structural basis underlying complex assembly andconformational transition of the type I R-M system

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, Y.P., Tang, Q., Zhang, J.Z., Tian, L.F., Gao, P., Yan, X.X.

Citation:

Structural basis underlying complex assembly and conformational transition of the type I R-M system.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.11151 - 11156 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.235R free:0.271

NDB ID:

5YEF

PDB ID:

5YEF 

Release:

2017-11-29

Title:

Crystal structure of CTCF ZFs2-8-Hs5-1aE

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yin, M., Wang, J., Wang, M., Li, X., Zhang, M., Wu, Q., Wang, Y.

Citation:

Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites
Cell Res. 27 pp.1365 - 1377 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.807Å R work:0.223R free:0.253

NDB ID:

5YEG

PDB ID:

5YEG 

Release:

2017-11-29

Title:

Crystal structure of CTCF ZFs4-8-Hs5-1a complex

Classification:

DNA BINDING PROTEIN

Authors:

Yin, M., Wang, J., Wang, M., Li, X., Zhang, M., Wu, Q., Wang, Y.

Citation:

Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites
Cell Res. 27 pp.1365 - 1377 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.186R free:0.204

NDB ID:

5YEH

PDB ID:

5YEH 

Release:

2017-11-29

Title:

Crystal struture of CTCF ZFs4-8-eCBS

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yin, M., Wang, J., Wang, M., Li, X., Zhang, M., Wu, Q., Wang, Y.

Citation:

Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites
Cell Res. 27 pp.1365 - 1377 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.328Å R work:0.221R free:0.269

NDB ID:

5YEL

PDB ID:

5YEL 

Release:

2017-11-29

Title:

Crystal structure of CTCF ZFs6-11-gb7CSE

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yin, M., Wang, J., Wang, M., Li, X., Zhang, M., Wu, Q., Wang, Y.

Citation:

Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites
Cell Res. 27 pp.1365 - 1377 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.96Å R work:0.267R free:0.285

NDB ID:

6AR1

PDB ID:

6AR1 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat))

Classification:

RNA binding protein/RNA/DNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.01Å R work:0.216R free:0.254

NDB ID:

6AR3

PDB ID:

6AR3 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met))

Classification:

RNA binding protein/RNA/DNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.41Å R work:0.273R free:0.323

NDB ID:

6AR5

PDB ID:

6AR5 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (Duplex Only)

Classification:

DNA/RNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.413Å R work:0.185R free:0.212

NDB ID:

5ONG

PDB ID:

5ONG 

Release:

2017-11-22

Title:

X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer

Classification:

DNA BINDING PROTEIN

Authors:

Frouws, T.D., Barth, P.D., Richmond, T.J.

Citation:

Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.797Å R work:0.205R free:0.246

NDB ID:

5ONW

PDB ID:

5ONW 

Release:

2017-11-22

Title:

X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer and the two H2A/H2B dimers crosslinked via H2A N38C

Classification:

DNA BINDING PROTEIN

Authors:

Frouws, T.D., Barth, P.D., Richmond, T.J.

Citation:

Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.207R free:0.254

NDB ID:

5UA1

PDB ID:

5UA1 

Release:

2017-11-22

Title:

Mycobacterium tuberculosis KstR in complex with a 18-bp DNA operator

Classification:

Transcription/DNA

Authors:

Ho, N.A.T., Dawes, S.S., Baker, E.N., Lott, J.S.

Citation:

Crystal structure of KstR in complex with cognate DNA operator
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.229R free:0.267

NDB ID:

5UA3

PDB ID:

5UA3 

Release:

2017-11-22

Title:

Crystal Structure of a DNA G-Quadruplex with a Cytosine Bulge

Classification:

DNA

Authors:

Meier, M., McDougall, M.D., Krahn, N.J., Torres, A.M., Booy, E.P., Patel, T.R., McKenna, S.A., Stetefeld, J.

Citation:

High-Resolution Structure of a DNA G-Quadruplex with a Cytosine Bulge
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8802Å R work:0.227R free:0.247

NDB ID:

5WC9

PDB ID:

5WC9 

Release:

2017-11-22

Title:

Human Pit-1 and 4xCATT DNA complex

Classification:

DNA BINDING PROTEIN

Authors:

Agarwal, S., Cho, T.Y.

Citation:

Biochemical and structural characterization of a novel cooperative binding mode by Pit-1 with CATT repeats in the macrophage migration inhibitory factor promoter.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.23R free:0.277

NDB ID:

5WX9

PDB ID:

5WX9 

Release:

2017-11-22

Title:

Crystal Structure of AtERF96 with GCC-box

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, C.Y., Cheng, Y.S.

Citation:

Crystal Structure of AtERF96 with GCC-box
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.76Å R work:0.206R free:0.224

NDB ID:

5X11

PDB ID:

5X11 

Release:

2017-11-22

Title:

Crystal structure of Bacillus subtilis PadR in complex with operator DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

Citation:

Structural basis of effector and operator recognition by the phenolic acid-responsive transcriptional regulator PadR
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.228R free:0.268

NDB ID:

5Y85

PDB ID:

5Y85 

Release:

2017-11-22

Title:

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Classification:

RNA

Authors:

Zheng, L., Mairhofer, E., Teplova, M., Zhang, Y., Ma, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun 8 pp.1180 - 1180 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.001Å R work:0.217R free:0.237

NDB ID:

5Y87

PDB ID:

5Y87 

Release:

2017-11-22

Title:

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Classification:

RNA

Authors:

Zheng, L., Mairhofer, E., Teplova, M., Zhang, Y., Ma, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun 8 pp.1180 - 1180 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.132Å R work:0.202R free:0.257

NDB ID:

5M68

PDB ID:

5M68 

Release:

2017-11-15

Title:

AT-rich DNA dodecamer with extra helical guanine-nickel coordination

Classification:

DNA

Authors:

Campos, J.L., Saperas, N., Acosta-Reyes, F.J., Pagan, M.

Citation:

AT-rich DNA with extra helical guanine-nickel coordination
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.64Å R work:0.227R free:0.246

NDB ID:

5MEY

PDB ID:

5MEY 

Release:

2017-11-15

Title:

Crystal structure of Smad4-MH1 bound to the GGCGC site.

Classification:

TRANSCRIPTION

Authors:

Martin-Malpartida, P., Batet, M., Kaczmarska, Z., Freier, R., Gomes, T., Aragon, E., Zou, Y., Xi, Q., Wang, Q., Ruiz, L., Vea, A., Marquez, J.A., Massague, J., Macias, M.J.

Citation:

Structural Basis for Genome Wide Recognition of 5-bp GC Motifs by SMAD Transcription Factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.222R free:0.238

NDB ID:

5MEZ

PDB ID:

5MEZ 

Release:

2017-11-15

Title:

Crystal structure of Smad4-MH1 bound to the GGCT site.

Classification:

TRANSCRIPTION

Authors:

Martin-Malpartida, P., Batet, M., Kaczmarska, Z., Freier, R., Gomes, T., Aragon, E., Zou, Y., Wang, Q., Xi, Q., Ruiz, L., Vea, A., Marquez, J.A., Massague, J., Macias, M.J.

Citation:

Structural Basis for Genome Wide Recognition of 5-bp GC Motifs by SMAD Transcription Factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.216R free:0.252

NDB ID:

5MF0

PDB ID:

5MF0 

Release:

2017-11-15

Title:

Crystal structure of Smad4-MH1 bound to the GGCCG site.

Classification:

TRANSCRIPTION

Authors:

Martin-Malpartida, P., Batet, M., Kaczmarska, Z., Freier, R., Gomes, T., Aragon, E., Zou, Y., Wang, Q., Xi, Q., Ruiz, L., Vea, A., Marquez, J.A., Massague, J., Macias, M.J.

Citation:

Structural Basis for Genome Wide Recognition of 5-bp GC Motifs by SMAD Transcription Factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.231R free:0.27

NDB ID:

5NM9

PDB ID:

5NM9 

Release:

2017-11-15

Title:

Crystal structure of the placozoa Trichoplax adhaerens Smad4-MH1 bound to the GGCGC site.

Classification:

TRANSCRIPTION

Authors:

Martin-Malpartida, P., Batet, M., Kaczmarska, Z., Freier, R., Gomes, T., Aragon, E., Zou, Y., Wang, Q., Xi, Q., Ruiz, L., Vea, A., Marquez, J.A., Massague, J., Macias, M.J.

Citation:

Structural Basis for Genome Wide Recognition of 5-bp GC Motifs by SMAD Transcription Factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.43Å R work:0.221R free:0.25

NDB ID:

5OD6

PDB ID:

5OD6 

Release:

2017-11-15

Title:

Crystal structure of Smad3-MH1 bound to the GGCGC site.

Classification:

TRANSCRIPTION

Authors:

Martin-Malpartida, P., Batet, M., Kaczmarska, Z., Freier, R., Gomes, T., Aragon, E., Zou, Y., Wang, Q., Xi, Q., Ruiz, L., Vea, A., Marquez, J.A., Massague, J., Macias, M.J.

Citation:

Structural Basis for Genome Wide Recognition of 5-bp GC Motifs by SMAD Transcription Factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.194R free:0.234

NDB ID:

5ODG

PDB ID:

5ODG 

Release:

2017-11-15

Title:

Crystal structure of Smad3-MH1 bound to the GGCT site.

Classification:

TRANSCRIPTION

Authors:

Martin-Malpartida, P., Batet, M., Kaczmarska, Z., Freier, R., Gomes, T., Aragon, E., Zou, Y., Wang, Q., Xi, Q., Ruiz, L., Vea, A., Marquez, J.A., Massague, J., Macias, M.J.

Citation:

Structural Basis for Genome Wide Recognition of 5-bp GC Motifs by SMAD Transcription Factors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.12Å R work:0.199R free:0.241

NDB ID:

5OMX

PDB ID:

5OMX 

Release:

2017-11-15

Title:

X-ray Structure of the H2A-N38C Nucleosome Core Particle

Classification:

DNA BINDING PROTEIN

Authors:

Frouws, T.D., Barth, P.D., Richmond, T.J.

Citation:

Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability.
J. Mol. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.32Å R work:0.221R free:0.259