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As of 26-Jun-2019 number of released structures: 10246
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6938  Download results as an excel file       Gallery view

NDB ID:

6A57

PDB ID:

6A57 

Release:

2019-06-26

Title:

Structure of histone demethylase REF6 complexed with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Tian, Z., Chen, Z.

Citation:

Structure of histone demethylase REF6 complexed with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.221R free:0.256

NDB ID:

6NUA

PDB ID:

6NUA 

Release:

2019-06-26

Title:

DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site

Classification:

dna binding protein/dna

Authors:

Thompson, P.S., Amidon, K.M., Mohni, K.N., Cortez, D., Eichman, B.F.

Citation:

rotection of abasic sites during DNA replication by a stable thiazolidine protein-DNA crosslink
Nat.Struct.Mol.Biol. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.64Å R work:0.17R free:0.221

NDB ID:

6NUH

PDB ID:

6NUH 

Release:

2019-06-26

Title:

DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site

Classification:

dna binding protein/dna

Authors:

Thompson, P.S., Amidon, K.M., Mohni, K.N., Cortez, D., Eichman, B.F.

Citation:

rotection of abasic sites during DNA replication by a stable thiazolidine protein-DNA crosslink
Nat.Struct.Mol.Biol. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.594Å R work:0.143R free:0.177

NDB ID:

6P1A

PDB ID:

6P1A 

Release:

2019-06-26

Title:

Transcription antitermination factor Q21 in complex with Q21-binding-element DNA

Classification:

GENE REGULATION

Authors:

Yin, Z., Ebright, R.H.

Citation:

Structural basis of Q-dependent transcription antitermination
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.837Å R work:0.231R free:0.274

NDB ID:

6GLD

PDB ID:

6GLD 

Release:

2019-06-19

Title:

Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2

Classification:

DNA

Authors:

McQuaid, K., Hall, J.P., Allan, D., Cardin, D., Brazier, J.A., Cardin, C.J.

Citation:

Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.061Å R work:0.149R free:0.158

NDB ID:

6OY6

PDB ID:

6OY6 

Release:

2019-06-19

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.096Å R work:0.211R free:0.264

NDB ID:

6P0S

PDB ID:

6P0S 

Release:

2019-06-19

Title:

Crystal structure of ternary DNA complex ""FX2"" containing E. coli Fis and phage lambda Xis

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hancock, S.P., Cascio, D., Johnson, R.C.

Citation:

Crystal structure of the Fis-Xis-DNA ternary complex on the native attR site, FX2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.222R free:0.23

NDB ID:

6P0T

PDB ID:

6P0T 

Release:

2019-06-19

Title:

Crystal structure of ternary DNA complex ""FX(1-2)-1Xis"" containing E. coli Fis and phage lambda Xis

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hancock, S.P., Cascio, D., Johnson, R.C.

Citation:

Crystal structure of the Fis-Xis-DNA ternary complex on the non-native site, FX1-2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.603Å R work:0.199R free:0.248

NDB ID:

6P0U

PDB ID:

6P0U 

Release:

2019-06-19

Title:

Crystal structure of ternary DNA complex "" FX(1-2)-2Xis"" containing E. coli Fis and phage lambda Xis

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hancock, S.P., Cascio, D., Johnson, R.C.

Citation:

Crystal structure of the Fis-Xis-DNA ternary complex on the non-native site, FX1-2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.192R free:0.218

NDB ID:

6P70

PDB ID:

6P70 

Release:

2019-06-19

Title:

X-ray crystal structure of bacterial RNA polymerase and pyrBI promoter complex

Classification:

TRANSCRIPTION/DNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.052Å R work:0.207R free:0.251

NDB ID:

6QHD

PDB ID:

6QHD 

Release:

2019-06-19

Title:

Lysine acetylated and tyrosine phosphorylated STAT3 in a complex with DNA

Classification:

TRANSCRIPTION

Authors:

Belo, Y., Mielko, Z., Nudelman, H., Afek, A., Ben-David, O., Shahar, A., Zarivach, R., Gordan, R., Arbely, E.

Citation:

Unexpected implications of STAT3 acetylation revealed by genetic encoding of acetyl-lysine.
Biochim Biophys Acta Gen Subj 1863 pp.1343 - 1350 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.293R free:0.343

NDB ID:

6DM7

PDB ID:

6DM7 

Release:

2019-06-12

Title:

NMR structure for Sp1 transcription factor duplex 5'-d(GGGGCGGGG)

Classification:

DNA

Authors:

Davis, E.V., Hennig, M., Arya, D.P.

Citation:

An NMR Structure Determination and Analysis of Four Sp1 Consensus Sequences
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6I4N

PDB ID:

6I4N 

Release:

2019-06-12

Title:

Dodecamer DNA containing the synthetic base pair P-Z in complex with a pyrrole-imidazole polyamide

Classification:

DNA

Authors:

Padroni, G., Withers, J.M., Taladriz-Sender, A., Reichenbach, L.F., Parkinson, J.A., Burley, G.A.

Citation:

Sequence-selective minor groove recognition of a DNA duplex containing synthetic genetic components.
J.Am.Chem.Soc. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6I4O

PDB ID:

6I4O 

Release:

2019-06-12

Title:

Dodecamer DNA containing the synthetic base pair P-Z

Classification:

DNA

Authors:

Padroni, G., Withers, J.M., Taladriz-Sender, A., Reichenbach, L.F., Parkinson, J.A., Burley, G.A.

Citation:

Sequence-selective minor groove recognition of a DNA duplex containing synthetic genetic components.
J.Am.Chem.Soc. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6K3J

PDB ID:

6K3J 

Release:

2019-06-12

Title:

Solution structure of APOBEC3G-CD2 with ssDNA, Product A

Classification:

HYDROLASE/DNA

Authors:

Yan, X., Lan, W., Wang, C., Cao, C.

Citation:

Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA.
Chem Asian J pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6K3K

PDB ID:

6K3K 

Release:

2019-06-12

Title:

Solution structure of APOBEC3G-CD2 with ssDNA, Product B

Classification:

HYDROLASE/DNA

Authors:

Yan, X., Lan, W., Wang, C., Cao, C.

Citation:

Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA.
Chem Asian J pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6RIO

PDB ID:

6RIO 

Release:

2019-06-12

Title:

Imidazole Polyamide-DNA complex NMR structure (5'-CGATGTACATCG-3')

Classification:

DNA

Authors:

Padroni, G., Withers, J.M., Taladriz-Sender, A., Reichenbach, L.F., Parkinson, J.A., Burley, G.A.

Citation:

Sequence-selective minor groove recognition of a DNA duplex containing synthetic genetic components.
J.Am.Chem.Soc. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6GO5

PDB ID:

6GO5 

Release:

2019-06-05

Title:

TdT chimera (Loop1 of pol mu) - Ternary complex with 1-nt gapped DNA substrate

Classification:

DNA BINDING PROTEIN

Authors:

Loc'h, J., Gerodimos, C.A., Rosario, S., Lieber, M.R., Delarue, M.

Citation:

TdT chimera (Loop1 of pol mu) - ternary complex with 1-nt gapped DNA substrate
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.217R free:0.264

NDB ID:

6GO6

PDB ID:

6GO6 

Release:

2019-06-05

Title:

TdT chimera (Loop1 of pol mu) - ternary complex with downstream dsDNA

Classification:

DNA BINDING PROTEIN

Authors:

Loc'h, J., Gerodimos, C.A., Rosario, S., Lieber, M.R., Delarue, M.

Citation:

TdT chimera (Loop1 of pol mu) - ternary complex with downstream dsDNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.202R free:0.231

NDB ID:

6GO7

PDB ID:

6GO7 

Release:

2019-06-05

Title:

TdT chimera (Loop1 of pol mu) - full DNA synapsis complex

Classification:

DNA BINDING PROTEIN

Authors:

Loc'h, J., Gerodimos, C.A., Rosario, S., Lieber, M.R., Delarue, M.

Citation:

TdT chimera (Loop1 of pol mu) - full DNA synapsis complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.19R free:0.222

NDB ID:

6HB4

PDB ID:

6HB4 

Release:

2019-06-05

Title:

TFAM in Complex with Site-Y

Classification:

DNA BINDING PROTEIN

Authors:

Cuppari, A., Fernandez-Millan, P., Battistini, F., Tarres-Sole, A., Lyonnais, S., Iruela, G., Ruiz-Lopez, E., Enciso, Y., Rubio-Cosials, A., Prohens, R., Pons, M., Alfonso, C., Toth, K., Rivas, G., Orozco, M., Sola, M.

Citation:

DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.189R free:0.235

NDB ID:

6HC3

PDB ID:

6HC3 

Release:

2019-06-05

Title:

TFAM bound to Site-X

Classification:

DNA BINDING PROTEIN

Authors:

Cuppari, A., Fernandez-Millan, P., Battistini, F., Tarres-Sole, A., Lyonnais, S., Iruela, G., Ruiz-Lopez, E., Enciso, Y., Rubio-Cosials, A., Prohens, R., Pons, M., Alfonso, C., Toth, K., Rivas, G., Orozco, M., Sola, M.

Citation:

DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.187R free:0.229

NDB ID:

6MU4

PDB ID:

6MU4 

Release:

2019-06-05

Title:

Bst DNA polymerase I FANA/DNA binary complex

Classification:

TRANSFERASE/DNA

Authors:

Jackson, L.N., Chim, N., Shi, C., Chaput, J.C.

Citation:

Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.62Å R work:0.187R free:0.21

NDB ID:

6MU5

PDB ID:

6MU5 

Release:

2019-06-05

Title:

Bst DNA polymerase I TNA/DNA binary complex

Classification:

TRANSFERASE/DNA

Authors:

Jackson, L.N., Chim, N., Shi, C., Chaput, J.C.

Citation:

Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.912Å R work:0.19R free:0.225

NDB ID:

6OY5

PDB ID:

6OY5 

Release:

2019-06-05

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.207R free:0.259

NDB ID:

6AJO

PDB ID:

6AJO 

Release:

2019-05-29

Title:

Complex form of Uracil DNA glycosylase X and uracil-DNA.

Classification:

DNA BINDING PROTEIN

Authors:

Ahn, W.C., Aroli, S., Kim, J.H., Moon, J.H., Lee, G.S., Lee, M.H., Sang, P.B., Oh, B.H., Varshney, U., Woo, E.J.

Citation:

Covalent binding of uracil DNA glycosylase UdgX to abasic DNA upon uracil excision.
Nat.Chem.Biol. 15 pp.607 - 614 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.269Å R work:0.191R free:0.257

NDB ID:

6AK8

PDB ID:

6AK8 

Release:

2019-05-29

Title:

Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Adenine and Incoming Ca-8oxodGTP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.74Å R work:0.174R free:0.2

NDB ID:

6AK9

PDB ID:

6AK9 

Release:

2019-05-29

Title:

Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Cytosine and Incoming Ca-8oxodGTP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.91Å R work:0.165R free:0.203

NDB ID:

6AKH

PDB ID:

6AKH 

Release:

2019-05-29

Title:

Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Adenine and Incoming Mn-dUMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.163R free:0.189

NDB ID:

6EDB

PDB ID:

6EDB 

Release:

2019-05-29

Title:

Crystal structure of SRY.hcGAS-21bp dsDNA complex

Classification:

Transferase/DNA

Authors:

Xie, W., Lama, L., Adura, C., Tomita, D., Glickman, J.F., Tuschl, T., Patel, D.J.

Citation:

Human cGAS catalytic domain has an additional DNA-binding interface that enhances enzymatic activity and liquid-phase condensation.
Proc.Natl.Acad.Sci.USA 116 pp.11946 - 11955 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.209Å R work:0.255R free:0.301

NDB ID:

6EDC

PDB ID:

6EDC 

Release:

2019-05-29

Title:

hcGAS-16bp dsDNA complex

Classification:

Transferase/DNA

Authors:

Xie, W., Lama, L., Adura, C., Tomita, D., Glickman, J.F., Tuschl, T., Patel, D.J.

Citation:

Human cGAS catalytic domain has an additional DNA-binding interface that enhances enzymatic activity and liquid-phase condensation.
Proc.Natl.Acad.Sci.USA 116 pp.11946 - 11955 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.712Å R work:0.238R free:0.277

NDB ID:

6F3C

PDB ID:

6F3C 

Release:

2019-05-29

Title:

The cytotoxic [Pt(H2bapbpy)] platinum complex interacting with the CGTACG hexamer

Classification:

DNA

Authors:

van Rixel, V.H.S., Busemann, A., Wissingh, M.F., Hopkins, S.L., Siewert, B., van de Griend, C., Siegler, M.A., Marzo, T., Papi, F., Ferraroni, M., Gratteri, P., Bazzicalupi, C., Messori, L., Bonnet, S.

Citation:

Induction of a Four-Way Junction Structure in the DNA Palindromic Hexanucleotide 5'-d(CGTACG)-3' by a Mononuclear Platinum Complex.
Angew.Chem.Int.Ed.Engl. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.257R free:0.292

NDB ID:

6IPD

PDB ID:

6IPD 

Release:

2019-05-29

Title:

Post-catalytic Complex of Human DNA Polymerase Mu with Templating Adenine and Mn-8oxodGMP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.186R free:0.217

NDB ID:

6IPE

PDB ID:

6IPE 

Release:

2019-05-29

Title:

Post-catalytic Complex of Human DNA Polymerase Mu with Templating Adenine and Mg-8oxodGMP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.172R free:0.203

NDB ID:

6IPF

PDB ID:

6IPF 

Release:

2019-05-29

Title:

Post-catalytic Complex of Human DNA Polymerase Mu with Templating Cytosine and Mn-8oxodGMP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.77Å R work:0.188R free:0.218

NDB ID:

6IPG

PDB ID:

6IPG 

Release:

2019-05-29

Title:

Post-catalytic Complex of Human DNA Polymerase Mu with Templating Cytosine and Mg-8oxodGMP

Classification:

TRANSFERASE/DNA

Authors:

Chang, Y.K., Huang, Y.P., Liu, X.X., Ko, T.P., Bessho, Y., Kawano, Y., Maestre-Reyna, M., Wu, W.J., Tsai, M.D.

Citation:

Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc. 141 pp.8489 - 8502 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.62Å R work:0.173R free:0.201

NDB ID:

6J37

PDB ID:

6J37 

Release:

2019-05-29

Title:

DNA minidumbbell structure of two CTTG repeats

Classification:

DNA

Authors:

Guo, P., Lam, S.L.

Citation:

Unprecedented hydrophobic stabilizations from a reverse wobble T·T mispair in DNA minidumbbell.
J.Biomol.Struct.Dyn. pp.1 - 8 2019

Experiment:

SOLUTION NMR

NDB ID:

6J9A

PDB ID:

6J9A 

Release:

2019-05-29

Title:

Crystal structure of Arabidopsis thaliana VAL1 in complex with FLC DNA fragment

Classification:

TRANSCRIPTION/DNA

Authors:

Tao, Z., Hu, H., Luo, X., Jia, B., Du, J., He, Y.

Citation:

Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis.
Nat.Plants 5 pp.424 - 435 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.915Å R work:0.204R free:0.242

NDB ID:

6J9B

PDB ID:

6J9B 

Release:

2019-05-29

Title:

Arabidopsis FUS3-DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

Tao, Z., Hu, H., Luo, X., Jia, B., Du, J., He, Y.

Citation:

Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis.
Nat.Plants 5 pp.424 - 435 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.175R free:0.194

NDB ID:

6J9C

PDB ID:

6J9C 

Release:

2019-05-29

Title:

Crystal structure of Arabidopsis thaliana transcription factor LEC2-DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

Tao, Z., Hu, H., Luo, X., Jia, B., Du, J., He, Y.

Citation:

Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis.
Nat.Plants 5 pp.424 - 435 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.102Å R work:0.224R free:0.256

NDB ID:

6JCX

PDB ID:

6JCX 

Release:

2019-05-29

Title:

Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt RNA

Classification:

TRANSCRIPTION

Authors:

Fang, C., Li, L., Shen, L., Shi, J., Wang, S., Feng, Y., Zhang, Y.

Citation:

Structures and mechanism of transcription initiation by bacterial ECF factors.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.903Å R work:0.21R free:0.256

NDB ID:

6JCY

PDB ID:

6JCY 

Release:

2019-05-29

Title:

Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E

Classification:

TRANSCRIPTION

Authors:

Fang, C., Li, L., Shen, L., Shi, J., Wang, S., Feng, Y., Zhang, Y.

Citation:

Structures and mechanism of transcription initiation by bacterial ECF factors.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.106Å R work:0.194R free:0.238

NDB ID:

6OD3

PDB ID:

6OD3 

Release:

2019-05-29

Title:

Human TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide Containing E-box Sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Li, J., Huang, Y., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.494Å R work:0.221R free:0.236

NDB ID:

6OD4

PDB ID:

6OD4 

Release:

2019-05-29

Title:

Human TCF4 C-terminal bHLH domain in Complex with 11-bp Oligonucleotide Containing E-box Sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Li, J., Huang, Y., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.699Å R work:0.222R free:0.266

NDB ID:

6OD5

PDB ID:

6OD5 

Release:

2019-05-29

Title:

Human TCF4 C-terminal bHLH domain in Complex with 12-bp Oligonucleotide Containing E-box Sequence with 5-carboxylcytosines

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Li, J., Huang, Y., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.234R free:0.28

NDB ID:

6DF5

PDB ID:

6DF5 

Release:

2019-05-22

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

A conformational switch at the zinc finger protein Kaiso directs recognitions of specific and methylated DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.819Å R work:0.21R free:0.24

NDB ID:

6DF8

PDB ID:

6DF8 

Release:

2019-05-22

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

A conformational switch at the zinc finger protein Kaiso directs recognitions of specific and methylated DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.536Å R work:0.179R free:0.221

NDB ID:

6DF9

PDB ID:

6DF9 

Release:

2019-05-22

Title:

Kaiso (ZBTB33) E535Q zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

A conformational switch at the zinc finger protein Kaiso directs recognitions of specific and methylated DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.319Å R work:0.172R free:0.217

NDB ID:

6DFA

PDB ID:

6DFA 

Release:

2019-05-22

Title:

Kaiso (ZBTB33) E535A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

A conformational switch at the zinc finger protein Kaiso directs recognitions of specific and methylated DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.908Å R work:0.18R free:0.203

NDB ID:

6DFB

PDB ID:

6DFB 

Release:

2019-05-22

Title:

Kaiso (ZBTB33) K539A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

A conformational switch at the zinc finger protein Kaiso directs recognitions of specific and methylated DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.66Å R work:0.178R free:0.201