A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 04-Dec-2013 number of released structures: 6921
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory
Other

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 4538   (Gallery view)

NDB ID:

 2M84

PDB ID:

2M84 

Release:

2013-11-27

Title:

Structure of 2'F-RNA/2'F-ANA chimeric duplex

Classification:

DNA, RNA

Authors:

Martin-Pintado, N., Deleavey, G.F., Portella, G., Campos-Olivas, R., Orozco, M., Damha, M.J., Gonzalez, C.

Citation:

Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids.
Angew.Chem.Int.Ed.Engl. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 2M8A

PDB ID:

2M8A 

Release:

2013-11-27

Title:

2'F-ANA/2'F-RNA alternated sequences

Classification:

DNA, RNA

Authors:

Martin-Pintado, N., Deleavey, G.F., Portella, G., Campos-Olivas, R., Orozco, M., Damha, M.J., Gonzalez, C.

Citation:

Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids.
Angew.Chem.Int.Ed.Engl. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 NA1999

PDB ID:

4GUO 

Release:

2013-11-27

Title:

structure of p73 DNA binding domain complex with 12 bp DNA

Classification:

TRANSCRIPTION/DNA

Authors:

S Ethayathulla, A., Viadiu, H.

Citation:

structure of p73 DNA binding domain complex with 12 bp DNA
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.19Å R work:0.207R free:0.27

NDB ID:

 NA2679

PDB ID:

4M8O 

Release:

2013-11-27

Title:

TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING dATP

Classification:

TRANSFERASE/DNA

Authors:

Hogg, M., Osterman, P., Bylund, G.O., Ganai, R.A., Lundstrm, E.-B., Sauer-Eriksson, A.E., Johansson, E.

Citation:

Structural basis for processive DNA synthesis by yeast DNA polymerase epsilon
Nat.Struct.Mol.Biol. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.18R free:0.237

NDB ID:

 NA2697

PDB ID:

4M9V 

Release:

2013-11-27

Title:

Zfp57 mutant (E182Q) in complex with 5-carboxylcytosine DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, Y., Olanrewaju, Y.O., Zhang, X., Cheng, X.

Citation:

DNA recognition of 5-carboxylcytosine by a Zfp57 mutant at atomic resolution of 0.97 angstrom.
Biochemistry pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:0.969Å R work:0.13R free:0.142

NDB ID:

 NA2099

PDB ID:

4HQH 

Release:

2013-11-20

Title:

Decamer Fluoro Carbocyclic LNA (R-F-cLNA) crystal structure

Classification:

DNA

Authors:

Seth, P.P., Pallan, P.S., Swayze, E.E., Egli, M.

Citation:

Properties of a Fluorinated Carbocyclic LNA Analog
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.198R free:0.246

NDB ID:

 NA2122

PDB ID:

4HW1 

Release:

2013-11-20

Title:

Multiple Crystal structures of an all-AT DNA dodecamer stabilized by weak interactions.

Classification:

DNA

Authors:

Acosta-Reyes, F., Subirana, J.A., Pous, J., Condom, N., Malinina, L., Campos, J.L.

Citation:

Multiple Crystal structures of an all-AT DNA dodecamer stabilized by weak interactions.
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.261R free:0.276

NDB ID:

 NA2207

PDB ID:

4I9V 

Release:

2013-11-20

Title:

The atomic structure of 5-Hydroxymethyl 2'-deoxycitidine base paired with 2'-deoxyguanosine in Dickerson Drew Dodecamer

Classification:

DNA

Authors:

Szulik, M.W., Nocek, B., Joachimiak, A., Stone, M.P.

Citation:

The atomic structure of 5-Hydroxymethyl 2`-deoxycitidine base paired with 2`-deoxyguanosine in Dickerson Drew Dodecamer
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.02Å R work:0.159R free:0.181

NDB ID:

 2MF8

PDB ID:

2MF8 

Release:

2013-11-06

Title:

HADDOCK model of MyT1 F4F5 - DNA complex

Classification:

METAL BINDING PROTEIN/DNA

Authors:

Gamsjaeger, R., O'Connell, M.R., Cubeddu, L., Shepherd, N.E., Lowry, J.A., Kwan, A.H., Vandevenne, M., Swanton, M.K., Matthews, J.M., Mackay, J.P.

Citation:

A structural analysis of DNA binding by Myelin Transcription Factor 1 double zinc fingers.
J.Biol.Chem. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 NA2232

PDB ID:

4J2X 

Release:

2013-11-06

Title:

CSL (RBP-Jk) with corepressor KyoT2 bound to DNA

Classification:

TRANSCRIPTION/DNA BINDING PROTEIN/DNA

Authors:

Collins, K.J., Kovall, R.A.

Citation:

Structure and Function of the CSL-KyoT2 Corepressor Complex-A Negative Regulator of Notch Signaling
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.85Å R work:0.188R free:0.23

NDB ID:

 NA2693

PDB ID:

4MDE 

Release:

2013-11-06

Title:

Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA

Classification:

TRANSFERASE/DNA

Authors:

Das, U., Wang, L.K., Smith, P., Jacewicz, A., Shuman, S.

Citation:

Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.164R free:0.205

NDB ID:

 NA2694

PDB ID:

4MDF 

Release:

2013-11-06

Title:

Structure of bacterial polynucleotide kinase Michaelis complex bound to GTP and DNA

Classification:

TRANSFERASE/DNA

Authors:

Das, U., Wang, L.K., Smith, P., Jacewicz, A., Shuman, S.

Citation:

Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.727Å R work:0.163R free:0.195

NDB ID:

 NA2716

PDB ID:

4MGW 

Release:

2013-11-06

Title:

Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence

Classification:

DNA

Authors:

Theruvathu, J.A., Yin, W., Pettitt, B.M., Sowers, L.C.

Citation:

Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence.
Biochemistry pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.93Å R work:0.195R free:0.262

NDB ID:

 NA2719

PDB ID:

4MKW 

Release:

2013-11-06

Title:

Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence

Classification:

DNA

Authors:

Theruvathu, J.A., Yin, W., Pettitt, B.M., Sowers, L.C.

Citation:

Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence.
Biochemistry pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.219Å R work:0.21R free:0.239

NDB ID:

 2ME6

PDB ID:

2ME6 

Release:

2013-10-30

Title:

NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens in complex with the DNA sequence CGACTAATTAGTCG

Classification:

TRANSCRIPTION/DNA

Authors:

Proudfoot, A., Wuthrich, K., Serrano, P., Geralt, M.

Citation:

NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens in complex with the DNA sequence CGACTAATTAGTCG
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 NA2695

PDB ID:

4MGU 

Release:

2013-10-30

Title:

Crystal structure of Acheta domesticus Densovirus

Classification:

VIRUS/DNA

Authors:

Meng, G., Zhang, X., Plevka, P., Yu, Q., Tijssen, P., Rossmann, M.G.

Citation:

The structure and host entry of an invertebrate parvovirus.
J.Virol. 87 pp.12523 - 12530 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.289R free:0.289

NDB ID:

 NA2725

PDB ID:

4C2T 

Release:

2013-10-30

Title:

Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Stelter, M., Acajjaoui, S., Mcsweeney, S., Timmins, J.

Citation:

Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd.
Plos One 8 pp.77364 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.997Å R work:0.246R free:0.271

NDB ID:

 NA2726

PDB ID:

4C2U 

Release:

2013-10-30

Title:

Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, Form 1

Classification:

HYDROLASE/DNA

Authors:

Stelter, M., Acajjaoui, S., Mcsweeney, S., Timmins, J.

Citation:

Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd.
Plos One 8 pp.77364 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.211R free:0.266

NDB ID:

 NA2727

PDB ID:

4C30 

Release:

2013-10-30

Title:

Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2

Classification:

HYDROLASE/DNA

Authors:

Stelter, M., Acajjaoui, S., Mcsweeney, S., Timmins, J.

Citation:

Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd.
Plos One 8 pp.77364 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.228R free:0.287

NDB ID:

 NA1815

PDB ID:

4FB3 

Release:

2013-10-23

Title:

Polyomavirus T-ag binds symmetrical repeats at the viral origin in an asymmetrical manner

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Harrison, C., Jiang, T., Banerjee, P., Meinke, G., D'Abramo, C.M., Schaffhausen, B., Bohm, A.

Citation:

Polyomavirus large T antigen binds symmetrical repeats at the viral origin in an asymmetrical manner.
J.Virol. 87 pp.13751 - 13759 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.79Å R work:0.221R free:0.244

NDB ID:

 NA2547

PDB ID:

4L62 

Release:

2013-10-23

Title:

Crystal Structure of Pseudomonas aeruginosa transcriptional regulator PA2196 bound to its operator DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Kim, Y., Kang, Y., Choe, J.

Citation:

Crystal structure of Pseudomonas aeruginosa transcriptional regulator PA2196 bound to its operator DNA.
Biochem.Biophys.Res.Commun. 440 pp.317 - 321 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.197R free:0.238

NDB ID:

 2LZV

PDB ID:

2LZV 

Release:

2013-10-16

Title:

DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link

Classification:

DNA

Authors:

Denisov, A.Y., McManus, F.P., O'Flaherty, D.K., Noronha, A.M., Wilds, C.J.

Citation:

Solution structures of DNA duplexes containing mispair-aligned O4U-heptylene-O4U and O6G-heptylene-O6G interstrand cross-links
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2LZW

PDB ID:

2LZW 

Release:

2013-10-16

Title:

DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link

Classification:

DNA

Authors:

Denisov, A.Y., McManus, F.P., O'Flaherty, D.K., Noronha, A.M., Wilds, C.J.

Citation:

Solution structures of DNA duplexes containing mispair-aligned O4U-heptylene-O4U and O6G-heptylene-O6G interstrand cross-links
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2MCO

PDB ID:

2MCO 

Release:

2013-10-16

Title:

Structural studies on dinuclear ruthenium(II) complexes that bind diastereoselectively to an anti-parallel folded human telomere sequence

Classification:

DNA

Authors:

Wilson, T., Costa, P.J., Felix, V., Williamson, M.P., Thomas, J.A.

Citation:

Structural studies on dinuclear ruthenium(II) complexes that bind diastereoselectively to an anti-parallel folded human telomere sequence.
J.Med.Chem. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 NA2157

PDB ID:

4I7Y 

Release:

2013-10-16

Title:

Crystal Structure of Human Alpha Thrombin in Complex with a 27-mer Aptamer Bound to Exosite II

Classification:

HYDROLASE/HYDROLASE INHIBITOR/DNA

Authors:

Russo Krauss, I., Pica, A., Merlino, A., Mazzarella, L., Sica, F.

Citation:

Duplex-quadruplex motifs in a novel structural organization cooperatively contribute to thrombin binding of a DNA aptamer
Acta Crystallogr.,Sect.D pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.18R free:0.248

NDB ID:

 NA2652

PDB ID:

4M9G 

Release:

2013-10-16

Title:

DNA Polymerase Beta E295K Binary Complex

Classification:

TRANSFERASE/DNA

Authors:

Eckenroth, B.E., Towle-Weicksel, J.B., Sweasy, J.B., Doublie, S.

Citation:

The E295K cancer variant of human polymerase beta favors the mismatch conformational pathway during nucleotide selection.
J.Biol.Chem. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.01Å R work:0.185R free:0.223

NDB ID:

 NA2653

PDB ID:

4M9H 

Release:

2013-10-16

Title:

DNA Polymerase Beta E295K Soaked with dTTP

Classification:

TRANSFERASE/DNA

Authors:

Eckenroth, B.E., Towle-Weicksel, J.B., Sweasy, J.B., Doublie, S.

Citation:

The E295K cancer variant of human polymerase beta favors the mismatch conformational pathway during nucleotide selection.
J.Biol.Chem. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.394Å R work:0.177R free:0.227

NDB ID:

 NA2654

PDB ID:

4M9J 

Release:

2013-10-16

Title:

DNA Polymerase Beta E295K Soaked with dUMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Eckenroth, B.E., Towle-Weicksel, J.B., Sweasy, J.B., Doublie, S.

Citation:

The E295K cancer variant of human polymerase beta favors the mismatch conformational pathway during nucleotide selection.
J.Biol.Chem. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.038Å R work:0.186R free:0.229

NDB ID:

 NA2655

PDB ID:

4M9L 

Release:

2013-10-16

Title:

DNA Polymerase Beta E295K Soaked with dCTP

Classification:

TRANSFERASE/DNA

Authors:

Eckenroth, B.E., Towle-Weicksel, J.B., Sweasy, J.B., Doublie, S.

Citation:

The E295K cancer variant of human polymerase beta favors the mismatch conformational pathway during nucleotide selection.
J.Biol.Chem. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.091Å R work:0.188R free:0.23

NDB ID:

 NA2656

PDB ID:

4M9N 

Release:

2013-10-16

Title:

DNA Polymerase Beta E295K Soaked with dATP

Classification:

TRANSFERASE/DNA

Authors:

Eckenroth, B.E., Towle-Weicksel, J.B., Sweasy, J.B., Doublie, S.

Citation:

The E295K cancer variant of human polymerase beta favors the mismatch conformational pathway during nucleotide selection.
J.Biol.Chem. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.275Å R work:0.191R free:0.226

NDB ID:

 NA2061

PDB ID:

4HCB 

Release:

2013-10-09

Title:

The metal-free form of crystal structure of E.coli ExoI-ssDNA complex

Classification:

HYDROLASE/DNA

Authors:

Qiu, R., Lou, T., Wei, J., Liu, M., Gu, S., Tang, R., Ji, C., Gong, W.

Citation:

The structures of Escherichia coli exonuclease I in complex with the single strand DNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.182R free:0.224

NDB ID:

 NA2062

PDB ID:

4HCC 

Release:

2013-10-09

Title:

The zinc ion bound form of crystal structure of E.coli ExoI-ssDNA complex

Classification:

HYDROLASE/DNA

Authors:

Qiu, R., Lou, T., Wei, J., Liu, M., Gu, S., Tang, R., Ji, C., Gong, W.

Citation:

The structures of Escherichia coli exonuclease I in complex with the single strand DNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.96Å R work:0.184R free:0.244

NDB ID:

 NA2155

PDB ID:

4I9Q 

Release:

2013-10-09

Title:

Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase

Classification:

TRANSFERASE/DNA

Authors:

Jacewicz, A., Trzemecka, A., Guja, K.E., Plochocka, D., Yakubovskaya, E., Bebenek, A., Garcia-Diaz, M.

Citation:

A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site.
Plos One 8 pp.e76700 - e76700 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.251R free:0.287

NDB ID:

 NA2390

PDB ID:

4KHQ 

Release:

2013-10-09

Title:

Ternary complex of RB69 mutant L415F wit DUMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.186Å R work:0.179R free:0.212

NDB ID:

 NA2391

PDB ID:

4KHS 

Release:

2013-10-09

Title:

Ternary complex of RB69 mutant L415F with a ribonucleotide at 0 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.12Å R work:0.176R free:0.216

NDB ID:

 NA2392

PDB ID:

4KHU 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.207R free:0.246

NDB ID:

 NA2393

PDB ID:

4KHW 

Release:

2013-10-09

Title:

Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.371Å R work:0.171R free:0.224

NDB ID:

 NA2394

PDB ID:

4KHY 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant L415F with ribonucleotide at -3 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.197R free:0.24

NDB ID:

 NA2395

PDB ID:

4KI4 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant L415F with ribonucleotides at 0 and -1 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.45Å R work:0.191R free:0.22

NDB ID:

 NA2396

PDB ID:

4KI6 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant l415f with ribonucleotides at -1 and -2 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.195R free:0.232

NDB ID:

 NA2420

PDB ID:

4KHN 

Release:

2013-10-09

Title:

Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase

Classification:

HYDROLASE, TRANSFERASE/dna

Authors:

Jacewicz, A., Trzemecka, A., Guja, K.E., Plochocka, D., Yakubovskaya, E., Bebenek, A., Garcia-Diaz, M.

Citation:

A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site.
Plos One 8 pp.e76700 - e76700 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.168R free:0.21

NDB ID:

 2MCC

PDB ID:

2MCC 

Release:

2013-10-02

Title:

Structural studies on dinuclear ruthenium(II) complexes that bind diastereoselectively to an anti-parallel folded human telomere sequence

Classification:

DNA

Authors:

Wilson, T., Costa, P.J., Felix, V., Williamson, M.P., Thomas, J.A.

Citation:

Structural studies on dinuclear ruthenium(II) complexes that bind diastereoselectively to an anti-parallel folded human telomere sequence.
J.Med.Chem. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 NA2250

PDB ID:

4J3N 

Release:

2013-10-02

Title:

Human Topoisomerase Iibeta in complex with DNA

Classification:

ISOMERASE/DNA

Authors:

Wu, C.C., Li, Y.C., Wang, Y.R., Li, T.K., Chan, N.L.

Citation:

On the structural basis and design guidelines for type II topoisomerase-targeting anticancer drugs
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.175R free:0.217

NDB ID:

 NA2706

PDB ID:

4C5X 

Release:

2013-10-02

Title:

Ultra High Resolution Dickerson-Drew dodecamer B-DNA with 5-Hydroxymethylcystosine Modification

Classification:

DNA

Authors:

Mcdonough, M., Lercher, L., El-Sagheer, A.H., Talhammer, A., Kriacionis, S., Brown, T., Schofield, C.J.

Citation:

Structural Insights Into How 5-Hydroxymethylation Influences Transcription Factor Binding
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.3Å R work:0.142R free:0.173

NDB ID:

 NA2707

PDB ID:

4C63 

Release:

2013-10-02

Title:

ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5- METHYLCYSTOSINE MODIFICATION

Classification:

DNA

Authors:

Mcdonough, M., Lercher, L., El-Sagheer, A.H., Talhammer, A., Kriacionis, S., Brown, T., Schofield, C.J.

Citation:

Structural Insights Into How 5-Hydroxymethylation Influences Transcription Factor Binding
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.32Å R work:0.149R free:0.184

NDB ID:

 NA2708

PDB ID:

4C64 

Release:

2013-10-02

Title:

ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA

Classification:

DNA

Authors:

Mcdonough, M., Lercher, L., El-Sagheer, A.H., Talhammer, A., Kriacionis, S., Brown, T., Schofield, C.J.

Citation:

Structural Insights Into How 5-Hydroxymethylation Influences Transcription Factor Binding
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.32Å R work:0.138R free:0.182

NDB ID:

 NA2039

PDB ID:

4H8K 

Release:

2013-09-25

Title:

Crystal structure of LC11-RNase H1 in complex with RNA/DNA hybrid

Classification:

Hydrolase/DNA/RNA

Authors:

Nguyen, T.N., You, D.J., Matsumoto, H., Kanaya, E., Koga, Y., Kanaya, S.

Citation:

Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid
J.Struct.Biol. 182 pp.144 - 154 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.206R free:0.277

NDB ID:

 NA2698

PDB ID:

3ZH2 

Release:

2013-09-25

Title:

Structure of Plasmodium falciparum lactate dehydrogenase in complex with a DNA aptamer

Classification:

OXIDOREDUCTASE

Authors:

Cheung, Y.W., Kwok, J., Law, A.W.L., Watt, R.M., Kotaka, M., Tanner, J.A.

Citation:

Structural Basis for Discriminatory Recognition of Plasmodium Lactate Dehydrogenase by a DNA Aptamer
Proc.Natl.Acad.Sci.USA 110 pp.15967 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.205R free:0.256

NDB ID:

 NA2699

PDB ID:

4BOC 

Release:

2013-09-25

Title:

Structure of mitochondrial RNA polymerase elongation complex

Classification:

TRANSCRIPTION

Authors:

Schwinghammer, K., Cheung, A.C.M., Morozov, Y.I., Agaronyan, K., Temiakov, D., Cramer, P.

Citation:

Structure of Human Mitochondrial RNA Polymerase Elongation Complex
Nat.Struct.Mol.Biol. 20 pp.1298 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.65Å R work:0.179R free:0.209

NDB ID:

 2M27

PDB ID:

2M27 

Release:

2013-09-18

Title:

Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: Insights into loop interactions of the parallel G-quadruplexes

Classification:

DNA

Authors:

Agrawal, P., Hatzakis, E., Guo, K., Carver, M., Yang, D.

Citation:

Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: insights into loop interactions of the parallel G-quadruplexes.
Nucleic Acids Res. pp. - 2013

Experiment:

 SOLUTION NMR

ndbadmin@ndbserver.rutgers.edu ©1995-2013 The Nucleic Acid Database Project | Rutgers, The State University of New Jersey