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As of 15-Mar-2023 number of released structures: 12686
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 8731  Download results as an excel file       Gallery view

NDB ID:

 7U38

PDB ID:

7U38 

Release:

2023-03-15

Title:

Pixantrone tethered DNA duplex

Classification:

DNA

Authors:

Kellum Jr., A.H., Pallan, P.S., Terrell, J.T., Fu, Y., Noh, B., Rizzo, C.J., Egli, M., Stone, M.P.

Citation:

Structural Characterization of a Covalent Conjugate between Pixantrone and an Abasic Site in DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.49Å R work:0.245R free:0.261

NDB ID:

 7XFV

PDB ID:

7XFV 

Release:

2023-03-15

Title:

Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2

Classification:

DNA

Authors:

Zhang, Y., Lan, W., Wang, C., Xue, H., Cao, C.

Citation:

Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis.
Chin.J.Chem. 40 pp.2179 - 2187 2023

Experiment:

 SOLUTION NMR

NDB ID:

 7ZQL

PDB ID:

7ZQL 

Release:

2023-03-08

Title:

d(CGCGTTAACGCG)2 B-DODECAMER AT 3100 BARS (310 MPa)

Classification:

DNA

Authors:

Prange, T., Colloc'h, N., Dhaussy, A.C., Lecouvey, M., Migianu-Griffoni, E., Girard, E.

Citation:

Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure
Crystals pp. - 2022

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.177R free:0.234

NDB ID:

 7ZQM

PDB ID:

7ZQM 

Release:

2023-03-08

Title:

d(CGCGCG)2 Z-DNA AT 3000 BARS (300 MPa)

Classification:

DNA

Authors:

Prange, T., Colloc'h, N., Dhaussy, A.C., Lecouvey, M., Migianu-Griffoni, E., Girard, E.

Citation:

Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure
Crystals pp. - 2022

Experiment:

 X-RAY DIFFRACTION Resolution:1.41Å R work:0.191R free:0.355

NDB ID:

 7ZQN

PDB ID:

7ZQN 

Release:

2023-03-08

Title:

d(CGCGCG)2 Z-DNA AT 5400 BARS (540 MPa)

Classification:

DNA

Authors:

Prange, T., Colloc'h, N., Dhaussy, A.C., Lecouvey, M., Migianu-Griffoni, E., Girard, E.

Citation:

Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure
Crystals pp. - 2022

Experiment:

 X-RAY DIFFRACTION Resolution:1.41Å R work:0.191R free:0.221

NDB ID:

 7ZQO

PDB ID:

7ZQO 

Release:

2023-03-08

Title:

d(CGCGCG)2 Z-DNA AT 7150 BARS (715 MPa)

Classification:

DNA

Authors:

Prange, T., Colloc'h, N., Dhaussy, A.C., Lecouvey, M., Migianu-Griffoni, E., Girard, E.

Citation:

Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure
Crystals pp. - 2022

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.212R free:0.283

NDB ID:

 8EP8

PDB ID:

8EP8 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.45Å R work:0.25R free:0.256

NDB ID:

 8EPB

PDB ID:

8EPB 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.61Å R work:0.215R free:0.292

NDB ID:

 8EPD

PDB ID:

8EPD 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.42Å R work:0.246R free:0.298

NDB ID:

 8EPE

PDB ID:

8EPE 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.45Å R work:0.238R free:0.262

NDB ID:

 8EPF

PDB ID:

8EPF 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.61Å R work:0.214R free:0.296

NDB ID:

 8EPG

PDB ID:

8EPG 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.255R free:0.294

NDB ID:

 8EPI

PDB ID:

8EPI 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.248R free:0.291

NDB ID:

 8F40

PDB ID:

8F40 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.45Å R work:0.224R free:0.263

NDB ID:

 8F42

PDB ID:

8F42 

Release:

2023-03-08

Title:

Engineering Crystals with Tunable Symmetries from 14- or 16-Base-Long DNA Strands

Classification:

DNA

Authors:

Zhang, C., Zhao, J., Lu, B., Seeman, N.C., Sha, R., Noinaj, N., Mao, C.

Citation:

Engineering DNA Crystals toward Studying DNA-Guest Molecule Interactions.
J.Am.Chem.Soc. 145 pp.4853 - 4859 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.225R free:0.278

NDB ID:

 7ZYX

PDB ID:

7ZYX 

Release:

2023-03-01

Title:

Dimeric i-motif from 2'Farabinocytidine-modified TC5

Classification:

DNA

Authors:

El-Khoury, R., Macaluso, V., Hennecker, C., Mittermaier, A.K., Orozco, M., Gonzalez, C., Garavis, M., Damha, M.J.

Citation:

i-Motif folding intermediates with zero-nucleotide loops are trapped by 2'-fluoroarabinocytidine via F···H and O···H hydrogen bonds.
Commun Chem 6 pp.31 - 31 2023

Experiment:

 SOLUTION NMR

NDB ID:

 8A71

PDB ID:

8A71 

Release:

2023-02-22

Title:

Crystal structure of right-handed Z-DNA containing 2'-deoxy-L-ribose in complex with the polyamine cadaverine and potassium cations at ultrahigh resolution

Classification:

DNA

Authors:

Drozdzal, P., Manszewski, T., Gilski, M., Brzezinski, K., Jaskolski, M.

Citation:

Right-handed Z-DNA at ultrahigh resolution: a tale of two hands and the power of the crystallographic method.
Acta Crystallogr D Struct Biol 79 pp.133 - 139 2023

Experiment:

 X-RAY DIFFRACTION Resolution:0.69Å R work:0.105R free:0.128

NDB ID:

 8BM4

PDB ID:

8BM4 

Release:

2023-02-22

Title:

Hairpin adopted by modified oligonucleotide A32_mod found in the promoter of AUTS2 gene.

Classification:

DNA

Authors:

Novotny, A., Plavec, J., Kocman, V.

Citation:

Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene.
Nucleic Acids Res. pp. - 2023

Experiment:

 SOLUTION NMR

NDB ID:

 8BM6

PDB ID:

8BM6 

Release:

2023-02-22

Title:

Hairpin adopted by oligonucleotide A36 found in the promoter of AUTS2 gene

Classification:

DNA

Authors:

Novotny, A., Plavec, J., Kocman, V.

Citation:

Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene.
Nucleic Acids Res. pp. - 2023

Experiment:

 SOLUTION NMR

NDB ID:

 8BM7

PDB ID:

8BM7 

Release:

2023-02-22

Title:

Hairpin adopted by oligonucleotide A38 found in the promoter of AUTS2 gene.

Classification:

DNA

Authors:

Novotny, A., Plavec, J., Kocman, V.

Citation:

Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene.
Nucleic Acids Res. pp. - 2023

Experiment:

 SOLUTION NMR

NDB ID:

 8BQY

PDB ID:

8BQY 

Release:

2023-02-22

Title:

An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure)

Classification:

DNA

Authors:

Serrano-Chacon, I., Mir, B., Cupellini, L., Colizzi, F., Orozco, M., Escaja, N., Gonzalez, C.

Citation:

pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc. 145 pp.3696 - 3705 2023

Experiment:

 SOLUTION NMR

NDB ID:

 8BV6

PDB ID:

8BV6 

Release:

2023-02-22

Title:

An i-motif domain able to undergo pH-dependent conformational transitions (neutral structure)

Classification:

DNA

Authors:

Serrano-Chacon, I., Mir, B., Cupellini, L., Colizzi, F., Orozco, M., Escaja, N., Gonzalez, C.

Citation:

pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc. 145 pp.3696 - 3705 2023

Experiment:

 SOLUTION NMR

NDB ID:

 8EC1

PDB ID:

8EC1 

Release:

2023-02-22

Title:

5'-CGCGAATTCGCG-3' and benzimidazole diamidine (DB1476) comlpex with ligand orientation I

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.63Å R work:0.183R free:0.226

NDB ID:

 8ED6

PDB ID:

8ED6 

Release:

2023-02-22

Title:

5'-CGCGAATTCGCG-3' and benzimidazole diamidine (DB1476) complex with ligand orientation II

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.63Å R work:0.182R free:0.222

NDB ID:

 8EDA

PDB ID:

8EDA 

Release:

2023-02-22

Title:

An alternating AT dodecamer benzimidazole (DB1476) complex

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.63Å R work:0.182R free:0.201

NDB ID:

 8EDB

PDB ID:

8EDB 

Release:

2023-02-22

Title:

5'-CGCGAATTCGCG-3' and an AT-specific binder (DB1884) complex

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.55Å R work:0.199R free:0.215

NDB ID:

 8F1S

PDB ID:

8F1S 

Release:

2023-02-22

Title:

A benzimidazole (DB1476) sequence-specific recognition of 5'-CGCAAAAAAGCG-3' in A-orientation

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.26R free:0.308

NDB ID:

 8F1V

PDB ID:

8F1V 

Release:

2023-02-22

Title:

A benzimidazole (DB1476) sequence-specific recognition of 5'-CGCAAAAAAGCG-3' in B-orientation

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.277R free:0.325

NDB ID:

 8F20

PDB ID:

8F20 

Release:

2023-02-22

Title:

Structure of an A-tract B-DNA Dodecamer: 5'-CGCAAAAAAGCG-3

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.23Å R work:0.251R free:0.285

NDB ID:

 8F2W

PDB ID:

8F2W 

Release:

2023-02-22

Title:

Structure of a B-Form Dodecamer: 5'-CGCGAATTCGCG-3

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.3Å R work:0.186R free:0.214

NDB ID:

 8F2Y

PDB ID:

8F2Y 

Release:

2023-02-22

Title:

Structure of an alternating AT dodecamer: 5'-CGCGATATCGCG-3

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.78Å R work:0.208R free:0.224

NDB ID:

 8F94

PDB ID:

8F94 

Release:

2023-02-22

Title:

Structure of an alternating AT 16-mer: 5'-GCTGGATATATCCAGC-3

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A.P., Farahat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.08Å R work:0.201R free:0.224

NDB ID:

 8FB4

PDB ID:

8FB4 

Release:

2023-02-22

Title:

Structure of an alternating AT 16-mer bound by diamidine DB1476: 5'-GCTGGATATATCCAGC-3

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A.P., Farahat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.49Å R work:0.257R free:0.294

NDB ID:

 8FDP

PDB ID:

8FDP 

Release:

2023-02-22

Title:

The native structure of a dodecamer: 5'-CGCAAATTTGCG-3

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.88Å R work:0.246R free:0.276

NDB ID:

 8FDQ

PDB ID:

8FDQ 

Release:

2023-02-22

Title:

An AT-specific DNA 5-CGCAAATTTCGC-3' with benzimidazole (DB1476) complex

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.54Å R work:0.204R free:0.242

NDB ID:

 8FDR

PDB ID:

8FDR 

Release:

2023-02-22

Title:

Structure of a dodecamer complex: 5'-CGCGAAAAGCCG-3-DB1476

Classification:

DNA

Authors:

Ogbonna, E.N., Paul, A., Faharat, A., Terrell, J.R., Ogbonna, V., Boykin, D.W., Wilson, W.D.

Citation:

X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences
Acs Bio Med Chem Au pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:1.55Å R work:0.22R free:0.246

NDB ID:

 7XH3

PDB ID:

7XH3 

Release:

2023-02-15

Title:

Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2

Classification:

DNA

Authors:

Zhang, Y., Lan, W., Wang, C., Xue, H., Cao, C.

Citation:

Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis.
Chin.J.Chem. 40 pp.2179 - 2187 2022

Experiment:

 SOLUTION NMR

NDB ID:

 7XH9

PDB ID:

7XH9 

Release:

2023-02-15

Title:

Crystal structure of a dimeric interlocked parallel G-quadruplex

Classification:

DNA

Authors:

Ngo, K.H., Liew, C.W., Lattmann, S., Winnerdy, F.R., Phan, A.T.

Citation:

Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A.G.G.G.G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun. 613 pp.153 - 158 2022

Experiment:

 X-RAY DIFFRACTION Resolution:1.63Å R work:0.224R free:0.246

NDB ID:

 7XHD

PDB ID:

7XHD 

Release:

2023-02-15

Title:

Crystal structure of a dimeric interlocked parallel G-quadruplex

Classification:

DNA

Authors:

Ngo, K.H., Liew, C.W., Lattmann, S., Winnerdy, F.R., Phan, A.T.

Citation:

Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A•G•G•G•G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun. 613 pp.153 - 158 2022

Experiment:

 X-RAY DIFFRACTION Resolution:1.66Å R work:0.181R free:0.211

NDB ID:

 7XIE

PDB ID:

7XIE 

Release:

2023-02-15

Title:

Crystal structure of a dimeric interlocked parallel G-quadruplex

Classification:

DNA

Authors:

Ngo, K.H., Liew, C.W., Lattmann, S., Winnerdy, F.R., Phan, A.T.

Citation:

Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A•G•G•G•G pentad in an interlocked G-quadruplex.
Biochem.Biophys.Res.Commun. 613 pp.153 - 158 2022

Experiment:

 X-RAY DIFFRACTION Resolution:1.97Å R work:0.207R free:0.237

NDB ID:

 7YDW

PDB ID:

7YDW 

Release:

2023-02-15

Title:

Crystal structure of the MPND-DNA complex

Classification:

DNA BINDING PROTEIN

Authors:

Yang, M., Li, X., Tian, Z., Ma, L., Ma, J., Liu, Y., Shang, G., Liang, A., Wu, W., Chen, Z.

Citation:

Structures of MPND Reveal the Molecular Recognition of Nucleosomes.
Int J Mol Sci 24 pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.47Å R work:0.245R free:0.253

NDB ID:

 7PRV

PDB ID:

7PRV 

Release:

2023-02-08

Title:

The glucocorticoid receptor in complex with fluticasone furoate, a PGC1a coactivator fragment and sgk 23bp

Classification:

SIGNALING PROTEIN

Authors:

Postel, S., Wissler, L., Johansson, C.A., Gunnarsson, A., Gordon, E., Collins, B., Castaldo, M., Kohler, C., Oling, D., Johansson, P., Froderberg Roth, L., Beinsteiner, B., Dainty, I., Delaney, S., Klaholz, B.P., Billas, I.M.L., Edman, K.

Citation:

Quaternary glucocorticoid receptor structure highlights allosteric interdomain communication.
Nat.Struct.Mol.Biol. pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.214R free:0.253

NDB ID:

 7PRW

PDB ID:

7PRW 

Release:

2023-02-08

Title:

The glucocorticoid receptor in complex with velsecorat, a PGC1a coactivator fragment and sgk 23bp

Classification:

SIGNALING PROTEIN

Authors:

Postel, S., Wissler, L., Johansson, C.A., Gunnarsson, A., Gordon, E., Collins, B., Castaldo, M., Kohler, C., Oling, D., Johansson, P., Froderberg Roth, L., Beinsteiner, B., Dainty, I., Delaney, S., Klaholz, B.P., Billas, I.M.L., Edman, K.

Citation:

Quaternary glucocorticoid receptor structure highlights allosteric interdomain communication.
Nat.Struct.Mol.Biol. pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.502Å R work:0.201R free:0.263

NDB ID:

 7V6V

PDB ID:

7V6V 

Release:

2023-02-08

Title:

trimolecular G-quadruplexes consists of a hairpin motif and two short chains

Classification:

DNA

Authors:

Zhang, N., Jing, H.T., Hu, W.X.

Citation:

trimolecular G-quadruplexes consists of a hairpin motif and two short chains
To Be Published pp. - 0

Experiment:

 SOLID-STATE NMR

NDB ID:

 8AMU

PDB ID:

8AMU 

Release:

2023-02-08

Title:

RepB pMV158 OBD domain bound to DDR region

Classification:

REPLICATION

Authors:

Machon, C., Ruiz-Maso, J.A., Amodio, J., Boer, D.R., Bordanaba-Ruiseco, L., Bury, K., Konieczny, I., Del Solar, G., Coll, M.

Citation:

Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein.
Nucleic Acids Res. 51 pp.1458 - 1472 2023

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.226R free:0.281

NDB ID:

 8BP2

PDB ID:

8BP2 

Release:

2023-02-08

Title:

2.8A STRUCTURE OF ZOLIFLODACIN WITH S.AUREUS DNA GYRASE AND DNA

Classification:

ISOMERASE

Authors:

Morgan, H., Lipka-Lloyd, M., Warren, A.J., Hughes, N., Holmes, J., Burton, N.P., Mahenthiralingam, E., Bax, B.D.

Citation:

A 2.8 angstrom Structure of Zoliflodacin in a DNA Cleavage Complex with Staphylococcus aureus DNA Gyrase.
Int J Mol Sci 24 pp. - 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.19R free:0.231

NDB ID:

 8E3D

PDB ID:

8E3D 

Release:

2023-02-08

Title:

ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#11)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ren, R., Horton, J.R., Chen, Q., Yang, J., Liu, B., Huang, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia.
J.Biol.Chem. 299 pp.102885 - 102885 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.62Å R work:0.205R free:0.237

NDB ID:

 8E3E

PDB ID:

8E3E 

Release:

2023-02-08

Title:

ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#10)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ren, R., Horton, J.R., Chen, Q., Yang, J., Liu, B., Huang, Y., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia.
J.Biol.Chem. 299 pp.102885 - 102885 2023

Experiment:

 X-RAY DIFFRACTION Resolution:2.99Å R work:0.203R free:0.235

NDB ID:

 7TG3

PDB ID:

7TG3 

Release:

2023-02-01

Title:

[T:Ag+/Hg2+:T--(pH8.5-pH11; 300s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 300s

Classification:

DNA

Authors:

Lu, B., Ohayon, Y.P., Sha, R., Woloszyn, K., Rothschild, L., Wind, S., Hendrickson, W., Mao, C., Seeman, N.C., Vecchioni, S.

Citation:

Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:4.59Å R work:0.133R free:0.221

NDB ID:

 7TGA

PDB ID:

7TGA 

Release:

2023-02-01

Title:

[T:Ag+/Hg2+:T--(pH8.5-pH11; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 30s

Classification:

DNA

Authors:

Lu, B., Ohayon, Y.P., Sha, R., Woloszyn, K., Rothschild, L., Wind, S., Hendrickson, W., Mao, C., Seeman, N.C., Vecchioni, S.

Citation:

Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:6.61Å R work:0.356R free:0.395

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