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As of 05-Mar-2014 number of released structures: 7076
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 4645   (Gallery view)

NDB ID:

 2MJX

PDB ID:

2MJX 

Release:

2014-03-05

Title:

Solution NMR structure of a mismatch DNA

Classification:

DNA

Authors:

Ghosh, A., Kumar, K.R., Chatterjee, S., Bhunia, A.

Citation:

Solution NMR structure of mismatch DNA
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2RT8

PDB ID:

2RT8 

Release:

2014-03-05

Title:

Structure of metallo-dna in solution

Classification:

DNA

Authors:

Yamaguchi, H., Sebera, J., Kondo, J., Oda, S., Komuro, T., Kawamura, T., Dairaku, T., Kondo, Y., Okamoto, I., Ono, A., Burda, J.V., Kojima, C., Sychrovsky, V., Tanaka, Y.

Citation:

The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Res. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 NA2051

PDB ID:

4GQJ 

Release:

2014-03-05

Title:

Complex of a binuclear Ruthenium compound D,D-([mu-(11,11')-bi(dppz)-(1,10-phenanthroline)4-Ru2]4+) bound to d(CGTACG)

Classification:

DNA

Authors:

Boer, D.R., Wu, L., Lincoln, P., Coll, M.

Citation:

Thread Insertion of a Bis(dipyridophenazine) Diruthenium Complex into the DNA Double Helix by the Extrusion of AT Base Pairs and Cross-Linking of DNA Duplexes.
Angew.Chem.Int.Ed.Engl. 53 pp.1949 - 1952 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.951Å R work:0.177R free:0.206

NDB ID:

 NA2379

PDB ID:

4KAZ 

Release:

2014-03-05

Title:

Crystal structure of RNase T in complex with a Y structured DNA

Classification:

Hydrolase/dna

Authors:

Hsiao, Y.-Y., Fang, W.-H., Lee, C.-C., Chen, Y.-P., Hsu, P.-C., Yuan, H.S.

Citation:

Structural insights into DNA repair by RNase T, an exonuclease processing 3′ end of structured DNA in repair pathways
Plos One 12 pp.e1001803 - e1001803 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.188R free:0.218

NDB ID:

 NA2380

PDB ID:

4KB0 

Release:

2014-03-05

Title:

Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC )

Classification:

Hydrolase/dna

Authors:

Hsiao, Y.-Y., Fang, W.-H., Lee, C.-C., Chen, Y.-P., Hsu, P.-C., Yuan, H.S.

Citation:

Structural insights into DNA repair by RNase T, an exonuclease processing 3′ end of structured DNA in repair pathways
Plos One 12 pp.e1001803 - e1001803 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.004Å R work:0.188R free:0.21

NDB ID:

 NA2381

PDB ID:

4KB1 

Release:

2014-03-05

Title:

Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT )

Classification:

Hydrolase/dna

Authors:

Hsiao, Y.-Y., Fang, W.-H., Lee, C.-C., Chen, Y.-P., Hsu, P.-C., Yuan, H.S.

Citation:

Structural insights into DNA repair by RNase T, an exonuclease processing 3′ end of structured DNA in repair pathways
Plos One 12 pp.e1001803 - e1001803 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.183R free:0.198

NDB ID:

 NA2481

PDB ID:

4L0A 

Release:

2014-03-05

Title:

X-ray structure of an all LNA quadruplex

Classification:

DNA, RNA

Authors:

Russo Krauss, I., Parkinson, G.N., Merlino, A., Mattia, C.A., Randazzo, A., Novellino, E., Mazzarella, L., Sica, F.

Citation:

A regular thymine tetrad and a peculiar supramolecular assembly in the first crystal structure of an all-LNA G-quadruplex.
Acta Crystallogr.,Sect.D 70 pp.362 - 370 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.159R free:0.18

NDB ID:

 NA2491

PDB ID:

4L24 

Release:

2014-03-05

Title:

Crystal structure of metallo-DNA duplex containing consecutive T-Hg(II)-T base pairs

Classification:

DNA

Authors:

Kondo, J., Yamada, T., Hirose, C., Okamoto, I., Tanaka, Y., Ono, A.

Citation:

Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl. 53 pp.2385 - 2388 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.257R free:0.266

NDB ID:

 NA2492

PDB ID:

4L25 

Release:

2014-03-05

Title:

Crystal structure of DNA duplex containing consecutive T-T mispairs

Classification:

DNA

Authors:

Kondo, J., Yamada, T., Hirose, C., Okamoto, I., Tanaka, Y., Ono, A.

Citation:

Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl. 53 pp.2385 - 2388 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.1Å R work:0.23R free:0.24

NDB ID:

 NA2493

PDB ID:

4L26 

Release:

2014-03-05

Title:

Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)

Classification:

DNA

Authors:

Kondo, J., Yamada, T., Hirose, C., Okamoto, I., Tanaka, Y., Ono, A.

Citation:

Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl. 53 pp.2385 - 2388 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.4Å R work:0.232R free:0.266

NDB ID:

 NA2600

PDB ID:

4LMG 

Release:

2014-03-05

Title:

Crystal structure of AFT2 in complex with DNA

Classification:

TRANSCRIPTION ACTIVATOR/DNA

Authors:

Poor, C.B., Wegner, S., Li, H., Dlouhy, A., Schuermann, J., Sanishvili, R., Hinshaw, J., Riggs-Gelasco, P., Outten, C., He, C.

Citation:

Molecular mechanism and structure of the S. cerevisiae iron regulator Aft2
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.188R free:0.236

NDB ID:

 NA2899

PDB ID:

4OL8 

Release:

2014-03-05

Title:

Ty3 reverse transcriptase bound to DNA/RNA

Classification:

TRANSFERASE, HYDROLASE/RNA/DNA

Authors:

Nowak, E., Miller, J.T., Bona, M.K., Studnicka, J., Szczepanowski, R.H., Jurkowski, J., Le Grice, S.F.J., Nowotny, M.

Citation:

Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.226R free:0.295

NDB ID:

 NA2205

PDB ID:

4JCX 

Release:

2014-02-26

Title:

Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Shevtsov, M.B., Streeter, S.D., Thresh, S.J., Mcgeehan, J.E., Kneale, G.G.

Citation:

Restriction-Modification Controller Protein C.Csp231I bound to its operator sites OL and OR
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.171R free:0.196

NDB ID:

 NA2271

PDB ID:

4JCY 

Release:

2014-02-26

Title:

Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OR operator complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Shevtsov, M.B., Streeter, S.D., Thresh, S.J., Mcgeehan, J.E., Kneale, G.G.

Citation:

Restriction-Modification Controller Protein C.Csp231I bound to its operator sites OL and OR
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.147R free:0.162

NDB ID:

 NA2711

PDB ID:

4MG2 

Release:

2014-02-26

Title:

ALKBH2 F102A cross-linked to undamaged dsDNA

Classification:

OXIDOREDUCTASE/DNA

Authors:

Chen, B., Gan, J., Yang, C.G.

Citation:

The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin
Sci China Chem 57 pp.307 - 313 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.233R free:0.278

NDB ID:

 NA2712

PDB ID:

4MGT 

Release:

2014-02-26

Title:

ALKBH2 R110A cross-linked to undamaged dsDNA

Classification:

OXIDOREDUCTASE/DNA

Authors:

Chen, B., Gan, J., Yang, C.G.

Citation:

The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin
Sci China Chem 57 pp.307 - 313 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.23R free:0.275

NDB ID:

 NA2799

PDB ID:

4NQA 

Release:

2014-02-26

Title:

Crystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Lou, X.H., Toresson, G., Benod, C., Suh, J.H., Phillips, K.J., Webb, P., Gustafsson, J.A.

Citation:

Structure of the retinoid X receptor alpha-liver X receptor beta (RXRalpha-LXRbeta) heterodimer on DNA
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.102Å R work:0.18R free:0.217

NDB ID:

 NA2910

PDB ID:

4OO8 

Release:

2014-02-26

Title:

Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA

Classification:

Hydrolase/DNA/RNA

Authors:

Nishimasu, H., Ran, F.A., Hsu, P.D., Konermann, S., Shehata, S.I., Dohmae, N., Ishitani, R., Zhang, F., Nureki, O.

Citation:

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
Cell(Cambridge,Mass.) pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.221R free:0.253

NDB ID:

 2MAP

PDB ID:

2MAP 

Release:

2014-02-19

Title:

Solution structure of the complex formed by the region 2 of E. coli sigmaE and its cognate -10 promoter element non template strand TGTCAAA.

Classification:

TRANSCRIPTION/DNA

Authors:

Campagne, S., Marsh, M.E., Capitani, G., Vorholt, J.A., Allain, F.H.

Citation:

Structural basis for -10 promoter element melting by environmentally induced sigma factors.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 SOLUTION NMR

NDB ID:

 NA2229

PDB ID:

4J2E 

Release:

2014-02-19

Title:

RB69 DNA Polymerase L415M Ternary Complex

Classification:

Transferase/DNA

Authors:

Xia, S., Wood, M., Bradley, M.J., De La Cruz, E.M., Konigsberg, W.H.

Citation:

Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics.
Nucleic Acids Res. 41 pp.9077 - 9089 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.02Å R work:0.178R free:0.213

NDB ID:

 NA2230

PDB ID:

4J2B 

Release:

2014-02-19

Title:

RB69 DNA Polymerase L415G Ternary Complex

Classification:

Transferase/DNA

Authors:

Xia, S., Wood, M., Bradley, M.J., De La Cruz, E.M., Konigsberg, W.H.

Citation:

Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics.
Nucleic Acids Res. 41 pp.9077 - 9089 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.04Å R work:0.169R free:0.219

NDB ID:

 NA2231

PDB ID:

4J2A 

Release:

2014-02-19

Title:

RB69 DNA Polymerase L415A Ternary Complex

Classification:

Transferase/DNA

Authors:

Xia, S., Wood, M., Bradley, M.J., De La Cruz, E.M., Konigsberg, W.H.

Citation:

Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics.
Nucleic Acids Res. 41 pp.9077 - 9089 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.178R free:0.211

NDB ID:

 NA2388

PDB ID:

4KFC 

Release:

2014-02-19

Title:

Crystal structure of a hyperactive mutant of response regulator KdpE complexed to its promoter DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Narayanan, A., Kumar, S., Evrard, A.N., Paul, L.N., Yernool, D.A.

Citation:

An asymmetric hetero-domain interface stabilizes a response regulator-DNA complex
NAT COMMUN pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.53Å R work:0.203R free:0.245

NDB ID:

 NA2427

PDB ID:

4J2D 

Release:

2014-02-19

Title:

RB69 DNA Polymerase L415K Ternary Complex

Classification:

Transferase/DNA

Authors:

Xia, S., Wang, J., Konigsberg, W.H.

Citation:

Role of L415 in the Replication of RB69 DNA Polymerase
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.76Å R work:0.17R free:0.197

NDB ID:

 NA2437

PDB ID:

4KNY 

Release:

2014-02-19

Title:

Crystal structure of the response regulator KdpE complexed to DNA in an active-like conformation

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Narayanan, A., Kumar, S., Evrard, A.N., Paul, L.N., Yernool, D.A.

Citation:

An asymmetric hetero-domain interface stabilizes a response regulator-DNA complex
NAT COMMUN pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.945Å R work:0.208R free:0.248

NDB ID:

 NA2631

PDB ID:

4LUP 

Release:

2014-02-19

Title:

Crystal structure of the complex formed by region of E. coli sigmaE bound to its -10 element non template strand

Classification:

TRANSCRIPTION/DNA

Authors:

Campagne, S., Marsh, M.E., Capitani, G., Vorholt, J.A., Allain, F.H.

Citation:

Structural basis for -10 promoter element melting by environmentally induced sigma factors.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.2Å R work:0.147R free:0.164

NDB ID:

 NA2897

PDB ID:

4OKL 

Release:

2014-02-19

Title:

Crystal Structure of d(CCCCGGTACCGGGG)2 at 1.65 Angstrom

Classification:

DNA

Authors:

Anna, V., Monica, P., Mandal, P.K., Gautham, N.

Citation:

Crystal Structure of d(CCCCGGTACCGGGG)2 at 1.65 Angstrom
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.65Å R work:0.226R free:0.242

NDB ID:

 NA2587

PDB ID:

4LDX 

Release:

2014-02-12

Title:

Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ARF1) in complex with protomor-like sequence ER7

Classification:

TRANSCRIPTION/DNA

Authors:

Boer, D.R., Freire-Rios, A., van den Berg, W.A., Saaki, T., Manfield, I.W., Kepinski, S., Lopez-Vidrieo, I., Franco-Zorrilla, J.M., de Vries, S.C., Solano, R., Weijers, D., Coll, M.

Citation:

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors.
Cell(Cambridge,Mass.) 156 pp.577 - 589 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.214R free:0.259

NDB ID:

 NA2668

PDB ID:

4M3R 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dT/dG at position n-1 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.07Å R work:0.177R free:0.22

NDB ID:

 NA2669

PDB ID:

4M3T 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dT/dG at position n-2 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.175R free:0.208

NDB ID:

 NA2670

PDB ID:

4M3U 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dT/dG at position n-3 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.07Å R work:0.177R free:0.223

NDB ID:

 NA2671

PDB ID:

4M3W 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dT/dG at position n-4 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.177R free:0.22

NDB ID:

 NA2672

PDB ID:

4M3X 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dT/dG at position n-5 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.19R free:0.241

NDB ID:

 NA2673

PDB ID:

4M3Y 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dG/dT at position n-1 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.86Å R work:0.185R free:0.22

NDB ID:

 NA2674

PDB ID:

4M3Z 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dG/dT at position n-2 of primer/tempLate duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.84Å R work:0.177R free:0.206

NDB ID:

 NA2675

PDB ID:

4M41 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dG/dT at position n-3 of primer/tempLate duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.194R free:0.237

NDB ID:

 NA2676

PDB ID:

4M42 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dG/dT at position n-4 of primer/tempLate duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.04Å R work:0.184R free:0.223

NDB ID:

 NA2677

PDB ID:

4M45 

Release:

2014-02-12

Title:

RB69 DNA polymerase ternary complex with dG/dT at position n-5 of primer/template duplex

Classification:

HYDROLASE/DNA

Authors:

Xia, S., Konigsberg, W.H.

Citation:

Mispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant.
Protein Sci. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.89Å R work:0.184R free:0.213

NDB ID:

 NA2696

PDB ID:

4M9E 

Release:

2014-02-12

Title:

Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, Y., Olanrewaju, Y.O., Zheng, Y., Hashimoto, H., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Structural basis for Klf4 recognition of methylated DNA
Nucleic Acids Res. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.851Å R work:0.186R free:0.233

NDB ID:

 NA2228

PDB ID:

4IZQ 

Release:

2014-02-05

Title:

GGGCATGCCC in the A-DNA Form

Classification:

DNA

Authors:

Hall, J.P., Ruiz-Morte, S., Murray, C.A., Cardin, C.J.

Citation:

GGGCATGCCC in the A-DNA Form
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.04Å R work:0.197R free:0.252

NDB ID:

 NA2234

PDB ID:

4J2I 

Release:

2014-02-05

Title:

Multiple crystal structures of an all-AT DNA dodecamer stabilized by weak interactions

Classification:

DNA

Authors:

Acosta-Reyes, F.J., Subirana, J.A., Pous, J., Sanchez, R., Condom, N., Baldini, R., Malinina, L., Campos, J.L.

Citation:

Multiple crystal structures of an all-AT DNA dodecamer stabilized by weak interactions
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.98Å R work:0.269R free:0.287

NDB ID:

 NA2649

PDB ID:

4LZG 

Release:

2014-02-05

Title:

Binary complex of human DNA Polymerase Mu with DNA

Classification:

TRANSFERASE/DNA

Authors:

Moon, A.F., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Bebenek, K., Pedersen, L.C.

Citation:

Sustained active site rigidity during synthesis by human DNA polymerase mu
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.599Å R work:0.174R free:0.204

NDB ID:

 NA2650

PDB ID:

4M04 

Release:

2014-02-05

Title:

Human DNA Polymerase Mu ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Moon, A.F., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Bebenek, K., Pedersen, L.C.

Citation:

Sustained active site rigidity during synthesis by human DNA polymerase mu
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.898Å R work:0.163R free:0.195

NDB ID:

 NA2651

PDB ID:

4M0A 

Release:

2014-02-05

Title:

Human DNA Polymerase Mu post-catalytic complex

Classification:

TRANSFERASE/DNA

Authors:

Moon, A.F., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Bebenek, K., Pedersen, L.C.

Citation:

Sustained active site rigidity during synthesis by human DNA polymerase mu
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.85Å R work:0.162R free:0.2

NDB ID:

 NA2856

PDB ID:

4O6A 

Release:

2014-02-05

Title:

Mouse cyclic GMP-AMP synthase (cGAS) in complex with DNA

Classification:

TRANSFERASE/DNA

Authors:

Zhang, X., Wu, J., Du, F., Xu, H., Sun, L., Chen, Z., Brautigam, C.A., Zhang, X., Chen, Z.J.

Citation:

The Cytosolic DNA Sensor cGAS Forms an Oligomeric Complex with DNA and Undergoes Switch-like Conformational Changes in the Activation Loop.
Cell Rep 6 pp.421 - 430 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.859Å R work:0.186R free:0.218

NDB ID:

 2LYG

PDB ID:

2LYG 

Release:

2014-01-29

Title:

Fuc_TBA

Classification:

DNA

Authors:

Gomez-Pinto, I., Vengut-Climent, E., Lucas, R., Avio, A., Eritja, R., Gonzalez Ibaez, C., Morales, J.

Citation:

Monosaccharide interactions with G-quadruplex DNA: induced-fit effect on thrombin-binding aptamer with sugars at the 5'-end
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 NA2226

PDB ID:

4IUF 

Release:

2014-01-29

Title:

Crystal Structure of Human TDP-43 RRM1 Domain in Complex with a Single-stranded DNA

Classification:

TRANSCRIPTION REGULATOR/DNA

Authors:

Kuo, P.H., Chiang, C.H., Wang, Y.T., Doudeva, L.G., Yuan, H.S.

Citation:

The crystal structure of TDP-43 RRM1-DNA complex reveals the specific recognition for UG- and TG-rich nucleic acids
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.752Å R work:0.206R free:0.258

NDB ID:

 NA2238

PDB ID:

4IVZ 

Release:

2014-01-29

Title:

A Y37F mutant of C.Esp1396I bound to its highest affinity operator site OM

Classification:

TRANSCRIPTION/DNA

Authors:

Martin, R.N.A., McGeehan, J.E., Kneale, G.G.

Citation:

Mutagenic and crystallographic analysis of the controller protein C.Esp1396I
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.169R free:0.214

NDB ID:

 NA2457

PDB ID:

3WAZ 

Release:

2014-01-29

Title:

Crystal structure of a restriction enzyme PabI in complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Miyazono, K., Furuta, Y., Watanabe-Matsui, M., Miyakawa, T., Ito, T., Kobayashi, I., Tanokura, M.

Citation:

A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi
NAT COMMUN pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.168R free:0.194

NDB ID:

 NA2465

PDB ID:

4KPY 

Release:

2014-01-29

Title:

DNA binding protein and DNA complex structure

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sheng, G., Zhao, H., Wang, J., Rao, Y., Tian, W., Swarts, D.C., van der Oost, J., Patel, D.J., Wang, Y.

Citation:

Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.
Proc.Natl.Acad.Sci.USA 111 pp.652 - 657 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.406Å R work:0.19R free:0.234

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