A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7472  Download results as an excel file       Gallery view

NDB ID:

 6T1F

PDB ID:

6T1F 

Release:

2020-10-14

Title:

Crystal structure of the C-terminally truncated chromosome-partitioning protein ParB from Caulobacter crescentus complexed to the centromeric parS site

Classification:

DNA BINDING PROTEIN

Authors:

Jalal, A.S.B., Pastrana, C.L., Tran, N.T., Stevenson, C.E.M., Lawson, D.M., Moreno-Herrero, F., Le, T.B.K.

Citation:

Structural and biochemical analyses of Caulobacter crescentus ParB reveal the role of its N-terminal domain in chromosome segregation
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.239R free:0.262

NDB ID:

 6UBF

PDB ID:

6UBF 

Release:

2020-10-14

Title:

Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, X., Velmurugu, Y., Zheng, G., Park, B., Shim, Y., Kim, Y., Liu, L., Van Houten, B., He, C., Ansari, A., Min, J.H.

Citation:

Kinetic gating mechanism of DNA damage recognition by Rad4/XPC.
Nat Commun 6 pp.5849 - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:4.597Å R work:0.314R free:0.355

NDB ID:

 6UIN

PDB ID:

6UIN 

Release:

2020-10-14

Title:

Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Paul, D., Min, J.H.

Citation:

Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.348Å R work:0.208R free:0.262

NDB ID:

 6XG8

PDB ID:

6XG8 

Release:

2020-10-14

Title:

ISCth4 transposase, pre-cleaved complex, PCC

Classification:

RECOMBINATION

Authors:

Kosek, D., Hickman, A.B., Ghirlando, R., He, S., Dyda, F.

Citation:

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition.
Embo J. pp.e105666 - e105666 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.22R free:0.267

NDB ID:

 6XGW

PDB ID:

6XGW 

Release:

2020-10-14

Title:

ISCth4 transposase, pre-reaction complex, PRC

Classification:

RECOMBINATION

Authors:

Kosek, D., Hickman, A.B., Ghirlando, R., He, S., Dyda, F.

Citation:

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition.
Embo J. pp.e105666 - e105666 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.249R free:0.296

NDB ID:

 6XGX

PDB ID:

6XGX 

Release:

2020-10-14

Title:

ISCth4 transposase, strand transfer complex 1, STC1

Classification:

RECOMBINATION

Authors:

Kosek, D., Hickman, A.B., Ghirlando, R., He, S., Dyda, F.

Citation:

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition.
Embo J. pp.e105666 - e105666 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.26R free:0.297

NDB ID:

 BDJ061

PDB ID:

7KCI 

Release:

2020-10-14

Title:

DETERMINANTS OF REPRESSOR/OPERATOR RECOGNITION FROM THE STRUCTURE OF THE TRP OPERATOR BINDING SITE

Classification:

DNA

Authors:

Shakked, Z., Guzikevich-Guerstein, G., Frolow, F., Rabinovich, D., Joachimiak, A., Sigler, P.B.

Citation:

Determinants of repressor/operator recognition from the structure of the trp operator binding site.
Nature 368 pp.469 - 473 1994

Experiment:

 X-RAY DIFFRACTION Resolution:1.95Å

NDB ID:

 6LA8

PDB ID:

6LA8 

Release:

2020-10-07

Title:

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.206R free:0.264

NDB ID:

 6LA9

PDB ID:

6LA9 

Release:

2020-10-07

Title:

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant)

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.194R free:0.265

NDB ID:

 6M3V

PDB ID:

6M3V 

Release:

2020-10-07

Title:

355 bp di-nucleosome harboring cohesive DNA termini

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.6Å R work:0.204R free:0.26

NDB ID:

 6M44

PDB ID:

6M44 

Release:

2020-10-07

Title:

355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant)

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.81Å R work:0.207R free:0.286

NDB ID:

 6SY0

PDB ID:

6SY0 

Release:

2020-10-07

Title:

Structure of the Plasmodium falciparum SIP2 DNA-binding AP2 tandem repeat in complex with two SPE2 half-sites

Classification:

DNA BINDING PROTEIN

Authors:

Niederwieser, I., Reiter, D., Kantsadi, A., Voss, T., Vakonakis, I.

Citation:

Structural and functional analysis of the Plasmodium falciparum SIP2 DNA binding domain
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.102Å R work:0.273R free:0.318

NDB ID:

 6WIC

PDB ID:

6WIC 

Release:

2020-10-07

Title:

Pre-catalytic quaternary complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Classification:

TRANSFERASE/DNA

Authors:

Kaminski, A.M., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break.
Nat Commun 11 pp.4784 - 4784 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.55Å R work:0.165R free:0.179

NDB ID:

 6WID

PDB ID:

6WID 

Release:

2020-10-07

Title:

Nucleotide incorporation intermediate into quaternary complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Classification:

TRANSFERASE/DNA

Authors:

Kaminski, A.M., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break.
Nat Commun 11 pp.4784 - 4784 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.163R free:0.177

NDB ID:

 6WIE

PDB ID:

6WIE 

Release:

2020-10-07

Title:

Post-catalytic nicked complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Classification:

TRANSFERASE/DNA

Authors:

Kaminski, A.M., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break.
Nat Commun 11 pp.4784 - 4784 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.169R free:0.186

NDB ID:

 6ZL2

PDB ID:

6ZL2 

Release:

2020-10-07

Title:

Structure of a parallel c-Myc modified with 3' duplex stem-loop overhang

Classification:

DNA

Authors:

Vianney, Y.M., Preckwinkel, P., Mohr, S., Weisz, K.

Citation:

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Chemistry pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6ZL9

PDB ID:

6ZL9 

Release:

2020-10-07

Title:

Structure of a parallel c-Myc modified with 5' duplex stem-loop overhang

Classification:

DNA

Authors:

Vianney, Y.M., Preckwinkel, P., Mohr, S., Weisz, K.

Citation:

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Chemistry pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6ZTE

PDB ID:

6ZTE 

Release:

2020-10-07

Title:

Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop

Classification:

DNA

Authors:

Vianney, Y.M., Preckwinkel, P., Mohr, S., Weisz, K.

Citation:

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Chemistry pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 7CV3

PDB ID:

7CV3 

Release:

2020-10-07

Title:

Quadruplex-duplex hybrid structure in the PIM1 gene, Form 1

Classification:

DNA

Authors:

Tan, D.J.Y., Winnerdy, F.R., Lim, K.W., Phan, A.T.

Citation:

Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Nucleic Acids Res. pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 7CV4

PDB ID:

7CV4 

Release:

2020-10-07

Title:

Quadruplex-duplex hybrid structure in the PIM1 gene, Form 2

Classification:

DNA

Authors:

Tan, D.J.Y., Winnerdy, F.R., Lim, K.W., Phan, A.T.

Citation:

Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Nucleic Acids Res. pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6R2V

PDB ID:

6R2V 

Release:

2020-09-30

Title:

Arabidopsis NF-Y/CCAAT-box complex

Classification:

TRANSCRIPTION

Authors:

Chaves-Sanjuan, A., Gnesutta, N., Chiara, M., Bernardini, A., Horner, D., Nardini, M., Mantovani, R.

Citation:

Structural features of NF-Y/CCAAT association in plants
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.503Å R work:0.199R free:0.246

NDB ID:

 6UEU

PDB ID:

6UEU 

Release:

2020-09-30

Title:

Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP

Classification:

REPLICATION

Authors:

Walsh, A.R., Beese, L.S., Wu, E.Y.

Citation:

Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.2R free:0.242

NDB ID:

 6X6Z

PDB ID:

6X6Z 

Release:

2020-09-30

Title:

Rev1 Ternary Complex with dCTP and Ca2+

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.4Å R work:0.186R free:0.207

NDB ID:

 6X70

PDB ID:

6X70 

Release:

2020-09-30

Title:

Rev1-DNA Binary Complex

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.209R free:0.261

NDB ID:

 6X71

PDB ID:

6X71 

Release:

2020-09-30

Title:

Rev1 Mg2+-facilitated Intermediate complex with reactant dCTP and product dCMP

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.78Å R work:0.184R free:0.232

NDB ID:

 6X72

PDB ID:

6X72 

Release:

2020-09-30

Title:

Rev1 Mg2+-facilitated Product Complex with two monophosphates

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.19Å R work:0.186R free:0.252

NDB ID:

 6X73

PDB ID:

6X73 

Release:

2020-09-30

Title:

Rev1 Mg2+-facilitated Product Complex with one monophosphate

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.176R free:0.244

NDB ID:

 6X74

PDB ID:

6X74 

Release:

2020-09-30

Title:

Rev1 Mg2+-facilitated Product Complex with no monophosphates

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.69Å R work:0.195R free:0.226

NDB ID:

 6X75

PDB ID:

6X75 

Release:

2020-09-30

Title:

Rev1 Mn2+-facilitated Product Complex with second dCTP bound

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.95Å R work:0.182R free:0.237

NDB ID:

 6X76

PDB ID:

6X76 

Release:

2020-09-30

Title:

Rev1 L325G Mn2+-facilitated Product Complex with second dCTP bound

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.53Å R work:0.202R free:0.272

NDB ID:

 6X77

PDB ID:

6X77 

Release:

2020-09-30

Title:

Rev1 R518A Ternary Complex with dCTP and Ca2+

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P., Freudenthal, B.D.

Citation:

Visualizing Rev1 Catalyze Protein-template DNA Synthesis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.64Å R work:0.18R free:0.221

NDB ID:

 7CLS

PDB ID:

7CLS 

Release:

2020-09-30

Title:

Solution structure of an intramolecular G-quadruplex containing a duplex bulge

Classification:

DNA

Authors:

Ngoc Nguyen, T.Q., Lim, K.W., Phan, A.T.

Citation:

Duplex formation in a G-quadruplex bulge.
Nucleic Acids Res. pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6UDN

PDB ID:

6UDN 

Release:

2020-09-23

Title:

Crystal Structure of a Self-Assembling DNA Scaffold Containing TA Sticky Ends and Rhombohedral Symmetry

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.602Å R work:0.233R free:0.255

NDB ID:

 6UEF

PDB ID:

6UEF 

Release:

2020-09-23

Title:

Crystal Structure of a Self-Assembling DNA Scaffold Containing Sequence Modifications to Attempt to Disrupt Crystal Contacts in a Rhombohedral Lattice.

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.95Å R work:0.235R free:0.255

NDB ID:

 6W0M

PDB ID:

6W0M 

Release:

2020-09-23

Title:

Human 8-oxoguanine glycosylase crosslinked with oxoG lesion containing DNA

Classification:

Lyase/DNA

Authors:

Shigdel, U.K., Ovchinnikov, V., Lee, S.J., Shih, J.A., Karplus, M., Nam, K., Verdine, G.L.

Citation:

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun 11 pp.4437 - 4437 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.37Å R work:0.196R free:0.265

NDB ID:

 6W0R

PDB ID:

6W0R 

Release:

2020-09-23

Title:

Human 8-oxoguanine glycosylase interrogating fully intrahelical undamaged DNA

Classification:

Lyase/DNA

Authors:

Shigdel, U.K., Ovchinnikov, V., Lee, S.J., Shih, J.A., Karplus, M., Nam, K., Verdine, G.L.

Citation:

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun 11 pp.4437 - 4437 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.35Å R work:0.208R free:0.249

NDB ID:

 6W13

PDB ID:

6W13 

Release:

2020-09-23

Title:

Human 8-oxoguanine glycosylase interrogating fully intrahelical oxoG lesion DNA

Classification:

Lyase/DNA

Authors:

Shigdel, U.K., Ovchinnikov, V., Lee, S.J., Shih, J.A., Karplus, M., Nam, K., Verdine, G.L.

Citation:

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun 11 pp.4437 - 4437 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.38Å R work:0.213R free:0.271

NDB ID:

 6M3D

PDB ID:

6M3D 

Release:

2020-09-16

Title:

X-ray crystal structure of tandemly connected engrailed homeodomains (EHD) with R53A mutations and DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sunami, T., Hirano, Y., Tamada, T., Kono, H.

Citation:

Structural basis for designing an array of engrailed homeodomains.
Acta Crystallogr D Struct Biol 76 pp.824 - 833 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.188R free:0.235

NDB ID:

 6TC9

PDB ID:

6TC9 

Release:

2020-09-16

Title:

Crystal structure of MutM from Neisseria meningitidis

Classification:

DNA BINDING PROTEIN

Authors:

Landova, B., Silhan, J.

Citation:

Conformational changes of DNA repair glycosylase MutM triggered by DNA binding.
Febs Lett. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.175Å R work:0.238R free:0.28

NDB ID:

 6TUW

PDB ID:

6TUW 

Release:

2020-09-16

Title:

human XPG-DNA, Complex 1

Classification:

DNA BINDING PROTEIN

Authors:

Gonzalez-Corrochano, R., Ruiz, F.M., Taylor, N.M.I., Huecas, S., Drakulic, S., Spinola-Amilibia, M., Fernandez-Tornero, C.

Citation:

The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair.
Nucleic Acids Res. 48 pp.9943 - 9958 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.265R free:0.293

NDB ID:

 6TUX

PDB ID:

6TUX 

Release:

2020-09-16

Title:

human XPG-DNA, Complex 2

Classification:

DNA BINDING PROTEIN

Authors:

Gonzalez-Corrochano, R., Ruiz, F.M., Taylor, N.M.I., Huecas, S., Drakulic, S., Spinola-Amilibia, M., Fernandez-Tornero, C.

Citation:

The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair.
Nucleic Acids Res. 48 pp.9943 - 9958 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.246R free:0.302

NDB ID:

 6U9Q

PDB ID:

6U9Q 

Release:

2020-09-16

Title:

Crystal Structure Analysis of DNA-BCL11A Znf domain complex

Classification:

TRANSCRIPTION/DNA

Authors:

Seo, H.-S., Dhe-Paganon, S.

Citation:

Crystal Structure Analysis of TAF1 Bromodomain
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.83Å R work:0.174R free:0.194

NDB ID:

 6UAL

PDB ID:

6UAL 

Release:

2020-09-16

Title:

A Self-Assembling DNA Crystal Scaffold with Cavities Containing 3 Helical Turns per Edge

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:4.514Å R work:0.197R free:0.242

NDB ID:

 6M0V

PDB ID:

6M0V 

Release:

2020-09-09

Title:

Crsytal structure of streptococcus thermophilus Cas9 in complex with the GGAA PAM

Classification:

HYDROLASE/DNA/RNA

Authors:

Zhang, Y., Zhang, H., Xu, X., Wang, Y., Chen, W., Wang, Y., Wu, Z., Tang, N., Wang, Y., Zhao, S., Gan, J., Ji, Q.

Citation:

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.213R free:0.256

NDB ID:

 6M0W

PDB ID:

6M0W 

Release:

2020-09-09

Title:

Crystal structure of Streptococcus thermophilus Cas9 in complex with the AGAA PAM

Classification:

HYDROLASE/DNA/RNA

Authors:

Zhang, Y., Zhang, H., Xu, X., Wang, Y., Chen, W., Wang, Y., Wu, Z., Tang, N., Wang, Y., Zhao, S., Gan, J., Ji, Q.

Citation:

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.76Å R work:0.219R free:0.259

NDB ID:

 6M0X

PDB ID:

6M0X 

Release:

2020-09-09

Title:

Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM

Classification:

DNA BINDING PROTEIN

Authors:

Zhang, Y., Zhang, H., Xu, X., Wang, Y., Chen, W., Wang, Y., Wu, Z., Tang, N., Wang, Y., Zhao, S., Gan, J., Ji, Q.

Citation:

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.561Å R work:0.225R free:0.255

NDB ID:

 6U6B

PDB ID:

6U6B 

Release:

2020-09-09

Title:

Structure of human DNA polymerase beta misinserting dAMPNPP opposite the 5'G of the cisplatin Pt-GG intrastrand crosslink with Manganese in the active site

Classification:

TRANSFERASE/DNA

Authors:

Ouzon-Shubeita, H., Vilas, C.K., Lee, S.

Citation:

Structures of the Mutagenic Bypass of the Major Cisplatin-DNA Lesion by Human DNA Polymerase Beta Reveal Insights into Cisplatin-Induced Mutagenesis
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.108Å R work:0.222R free:0.267

NDB ID:

 6XWG

PDB ID:

6XWG 

Release:

2020-09-09

Title:

Crystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound to the Human RARb2 DR5 Response Element

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Bourguet, M., Przybilla, F., Peluso-Iltis, C., Poussin-Courmontagne, P., Mely, Y., Cianferani, S., Jeffries, C.M., Svergun, D.I., Rochel, N.

Citation:

Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR.
Nucleic Acids Res. 48 pp.9969 - 9985 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.19R free:0.207

NDB ID:

 6XWH

PDB ID:

6XWH 

Release:

2020-09-09

Title:

Crystal Structure of the Human RXR DNA-Binding Domain Homodimer Bound to the Human Hoxb13 DR0 Response Element

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Bourguet, M., Przybilla, F., Peluso-Iltis, C., Poussin-Courmontagne, P., Mely, Y., Cianferani, S., Jeffries, C.M., Svergun, D.I., Rochel, N.

Citation:

Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR.
Nucleic Acids Res. 48 pp.9969 - 9985 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.185R free:0.224

NDB ID:

 6YCQ

PDB ID:

6YCQ 

Release:

2020-09-09

Title:

Crystal structure of the DNA binding domain of Arabidopsis thaliana Auxin Response Factor 1 (AtARF1) in complex with High Affinity DNA

Classification:

TRANSCRIPTION

Authors:

Freire-Rios, A., Tanaka, K., Crespo, I., van der Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Boer, D.R., Mironova, V., Weijers, D.

Citation:

Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis .
Proc.Natl.Acad.Sci.USA 117 pp.24557 - 24566 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.65Å R work:0.171R free:0.199

ndbadmin@ndbserver.rutgers.edu ©1995-2020 The Nucleic Acid Database Project | Rutgers, The State University of New Jersey