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As of 21-Sep-2016 number of released structures: 8505
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5733  Download results as an excel file       Gallery view

NDB ID:

5DUI

PDB ID:

5DUI 

Release:

2016-09-21

Title:

Identification of a new FoxO1 binding site that precludes CREB binding at the glucose-6-phosphatase catalytic subunit gene promoter

Classification:

TRANSCRIPTION/dna

Authors:

Singh, P., Han, E.H., Endrizzi, J.A., O'Brien, R.M., Chi, Y.-I.

Citation:

Identification of a new and degenerate FoxO1 binding site within a composite binding site of the human glucose-6-phosphatase gene promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.306Å R work:0.208R free:0.245

NDB ID:

5LUY

PDB ID:

5LUY 

Release:

2016-09-21

Title:

X-ray structure of the complex between human alpha-thrombin and modified 15-mer DNA aptamer containing 5-(3-(acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue

Classification:

hydrolase/dna

Authors:

Dolot, R.M., Nawrot, B., Yang, X.

Citation:

Structures of human alpha-thrombin with modified 15-mer DNA aptamers
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.24Å R work:0.16R free:0.208

NDB ID:

5SWM

PDB ID:

5SWM 

Release:

2016-09-21

Title:

BACILLUS HALODURANS RNASE H MUTANT D132N IN COMPLEX WITH 12-MER FRNA/DNA HYBRID

Classification:

HYDROLASE/RNA/DNA

Authors:

Pallan, P.S., Prakash, T.P., De Leon, A.R., Egli, M.

Citation:

Limits of RNA 2'-OH Mimicry by Fluorine: Crystal Structure of Bacillus halodurans RNase H Bound to a 2'F-RNA:DNA Hybrid.
Biochemistry pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.16R free:0.185

NDB ID:

5T9J

PDB ID:

5T9J 

Release:

2016-09-21

Title:

Crystal Structure of human GEN1 in complex with Holliday junction DNA in the upper interface

Classification:

HYDROLASE

Authors:

Lee, S.H., Princz, L.N., Klugel, M.F., Habermann, B., Pfander, B., Biertumpfel, C.

Citation:

Human Holliday junction resolvase GEN1 uses a chromodomain for efficient DNA recognition and cleavage.
Elife 4 pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.00013Å R work:0.198R free:0.24

NDB ID:

2N6C

PDB ID:

2N6C 

Release:

2016-09-14

Title:

Solution structure for quercetin complexed with c-myc G-quadruplex DNA

Classification:

DNA

Authors:

Kumar, A., Tawani, A.

Citation:

Solution structure for quercetin complexed with c-myc G-quadruplex DNA
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

4Z2C

PDB ID:

4Z2C 

Release:

2016-09-14

Title:

Quinolone(Moxifloxacin)-DNA cleavage complex of gyrase from S. pneumoniae

Classification:

ISOMERASE

Authors:

Laponogov, I., Veselkov, D.A., Pan, X.-S., Selvarajah, J., Crevel, I.M.-T., Fisher, L.M., Sanderson, M.R.

Citation:

Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.19Å R work:0.223R free:0.267

NDB ID:

4Z2D

PDB ID:

4Z2D 

Release:

2016-09-14

Title:

Quinolone(Levofloxacin)-DNA cleavage complex of gyrase from S. pneumoniae

Classification:

ISOMERASE

Authors:

Laponogov, I., Veselkov, D.A., Pan, X.-S., Selvarajah, J., Crevel, I.M.-T., Fisher, L.M., Sanderson, M.R.

Citation:

Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.38Å R work:0.228R free:0.279

NDB ID:

4Z2E

PDB ID:

4Z2E 

Release:

2016-09-14

Title:

Quinolone(Trovafloxacin)-DNA cleavage complex of gyrase from S. pneumoniae

Classification:

ISOMERASE

Authors:

Laponogov, I., Veselkov, D.A., Pan, X.-S., Selvarajah, J., Crevel, I.M.-T., Fisher, L.M., Sanderson, M.R.

Citation:

Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.46Å R work:0.247R free:0.292

NDB ID:

4Z3O

PDB ID:

4Z3O 

Release:

2016-09-14

Title:

Quinolone(Moxifloxacin)-DNA cleavage complex of topoisomerase IV from S. pneumoniae

Classification:

ISOMERASE

Authors:

Laponogov, I., Veselkov, D.A., Pan, X.-S., Selvarajah, J., Crevel, I.M.-T., Fisher, L.M., Sanderson, M.R.

Citation:

Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.44Å R work:0.181R free:0.211

NDB ID:

4Z4Q

PDB ID:

4Z4Q 

Release:

2016-09-14

Title:

Quinazolinedione(PD 0305970)-DNA cleavage complex of topoisomerase IV from S. pneumoniae

Classification:

ISOMERASE

Authors:

Laponogov, I., Veselkov, D.A., Pan, X.-S., Selvarajah, J., Crevel, I.M.-T., Fisher, L.M., Sanderson, M.R.

Citation:

Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.04Å R work:0.161R free:0.204

NDB ID:

4Z53

PDB ID:

4Z53 

Release:

2016-09-14

Title:

Quinolone(Trovafloxacin)-DNA cleavage complex of topoisomerase IV from S. pneumoniae

Classification:

ISOMERASE

Authors:

Laponogov, I., Veselkov, D.A., Pan, X.-S., Selvarajah, J., Crevel, I.M.-T., Fisher, L.M., Sanderson, M.R.

Citation:

Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.26Å R work:0.173R free:0.207

NDB ID:

5DNM

PDB ID:

5DNM 

Release:

2016-09-14

Title:

Nucleosome core particle containing adducts of ruthenium(II)-toluene PTA complex

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Adhireksan, Z., Muhammad, R., Davey, C.A.

Citation:

Nucleosome core particle containing adducts of ruthenium(II)-toluene PTA complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.81Å R work:0.208R free:0.24

NDB ID:

5DNN

PDB ID:

5DNN 

Release:

2016-09-14

Title:

Nucleosome core particle containing adducts of gold(I)-triethylphosphane and ruthenium(II)-toluene PTA complexes

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Adhireksan, Z., Ma, Z., Davey, C.A.

Citation:

Nucleosome core particle containing adducts of gold(I)-triethylphosphane and ruthenium(II)-toluene PTA complexes
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.214R free:0.236

NDB ID:

5HQF

PDB ID:

5HQF 

Release:

2016-09-14

Title:

DNA duplex containing a ribonolactone lesion

Classification:

DNA

Authors:

Zalesak, J., Constant, J.F., Jourdan, M.

Citation:

Nuclear Magnetic Resonance Solution Structure of DNA Featuring Clustered 2'-Deoxyribonolactone and 8-Oxoguanine Lesions.
Biochemistry 55 pp.3899 - 3906 2016

Experiment:

SOLUTION NMR

NDB ID:

5HQQ

PDB ID:

5HQQ 

Release:

2016-09-14

Title:

DNA duplex containing a ribonolactone lesion

Classification:

DNA

Authors:

Zalesak, J., Constant, J.F., Jourdan, M.

Citation:

Nuclear Magnetic Resonance Solution Structure of DNA Featuring Clustered 2'-Deoxyribonolactone and 8-Oxoguanine Lesions.
Biochemistry 55 pp.3899 - 3906 2016

Experiment:

SOLUTION NMR

NDB ID:

5JEU

PDB ID:

5JEU 

Release:

2016-09-14

Title:

del-[Ru(phen)2(dppz)]2+ bound to d(TCGGCGCCGA) with Ba2+

Classification:

DNA

Authors:

Hall, J.P., Keane, P.M., Beer, H., Buchner, K., Winter, G., Sorensen, T.L., Cardin, D.J., Brazier, J.A., Cardin, C.J.

Citation:

Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:0.97Å R work:0.112R free:0.126

NDB ID:

5JEV

PDB ID:

5JEV 

Release:

2016-09-14

Title:

del-[Ru(phen)2(dppz]2+ bound to d(TCGGCGCCGA) with Cobalt hexammine

Classification:

DNA

Authors:

Hall, J.P., Keane, P.M., Beer, H., Buchner, K., Winter, G., Sorensen, T.L., Cardin, D.J., Brazier, J.A., Cardin, C.J.

Citation:

Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:0.99Å R work:0.123R free:0.141

NDB ID:

5JVT

PDB ID:

5JVT 

Release:

2016-09-14

Title:

Crystal structure of the DNA binding domain of transcription factor FLI1 in complex with an 11-mer DNA GACCGGAAGTG

Classification:

transcription/dna

Authors:

Hou, C., Weidenbach, S., Cano, K.E., Wang, Z., Mitra, P., Ivanov, D.N., Rohr, J., Tsodikov, O.V.

Citation:

Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.194R free:0.237

NDB ID:

5JVW

PDB ID:

5JVW 

Release:

2016-09-14

Title:

Crystal structure of mithramycin analogue MTM SA-Trp in complex with a 10-mer DNA AGAGGCCTCT.

Classification:

dna/antibiotic

Authors:

Hou, C., Weidenbach, S., Cano, K.E., Wang, Z., Mitra, P., Ivanov, D.N., Rohr, J., Tsodikov, O.V.

Citation:

Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.218R free:0.267

NDB ID:

5JW0

PDB ID:

5JW0 

Release:

2016-09-14

Title:

Crystal structure of mithramycin analogue MTM SA-Phe in complex with a 10-mer DNA AGGGTACCCT

Classification:

dna/antibiotic

Authors:

Hou, C., Weidenbach, S., Cano, K.E., Wang, Z., Mitra, P., Ivanov, D.N., Rohr, J., Tsodikov, O.V.

Citation:

Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.261R free:0.289

NDB ID:

5JW2

PDB ID:

5JW2 

Release:

2016-09-14

Title:

Crystal structure of mithramycin analogue MTM SA-Phe in complex with a 10-mer DNA AGGGATCCCT

Classification:

DNA/antibiotic

Authors:

Hou, C., Weidenbach, S., Cano, K.E., Wang, Z., Mitra, P., Ivanov, D.N., Rohr, J., Tsodikov, O.V.

Citation:

Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.279R free:0.288

NDB ID:

5KE6

PDB ID:

5KE6 

Release:

2016-09-14

Title:

mouse Klf4 ZnF1-3 and TpG/CpA sequence DNA complex structure

Classification:

transcription/DNA

Authors:

Hashimoto, H., Wang, D., Steves, A.N., Jin, P., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Distinctive Klf4 mutants determine preference for DNA methylation status.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.99Å R work:0.197R free:0.233

NDB ID:

5KE7

PDB ID:

5KE7 

Release:

2016-09-14

Title:

mouse Klf4 ZnF1-3 and TpG/MpA sequence DNA complex structure

Classification:

transcription/dna

Authors:

Hashimoto, H., Wang, D., Steves, A.N., Jin, P., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Distinctive Klf4 mutants determine preference for DNA methylation status.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.06Å R work:0.193R free:0.216

NDB ID:

5KE8

PDB ID:

5KE8 

Release:

2016-09-14

Title:

mouse Klf4 E446P ZnF1-3 and MpG/MpG sequence DNA complex structure

Classification:

transcription/dna

Authors:

Hashimoto, H., Wang, D., Steves, A.N., Jin, P., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Distinctive Klf4 mutants determine preference for DNA methylation status.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.229R free:0.269

NDB ID:

5KE9

PDB ID:

5KE9 

Release:

2016-09-14

Title:

mouse Klf4 E446P ZnF1-3 and TpG/CpA sequence DNA complex structure

Classification:

transcription factor/DNA

Authors:

Hashimoto, H., Wang, D., Steves, A.N., Jin, P., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Distinctive Klf4 mutants determine preference for DNA methylation status.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.336Å R work:0.214R free:0.271

NDB ID:

5KEA

PDB ID:

5KEA 

Release:

2016-09-14

Title:

mouse Klf4 ZnF1-3 (E446D) and CpG/CpA sequence DNA complex structure: Form I

Classification:

transcription factor/DNA

Authors:

Hashimoto, H., Wang, D., Steves, A.N., Jin, P., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Distinctive Klf4 mutants determine preference for DNA methylation status.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.458Å R work:0.228R free:0.282

NDB ID:

5KEB

PDB ID:

5KEB 

Release:

2016-09-14

Title:

mouse Klf4 ZnF1-3 (E446D) and CpG/CpG sequence DNA complex structure: Form II

Classification:

transcription factor/DNA

Authors:

Hashimoto, H., Wang, D., Steves, A.N., Jin, P., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Distinctive Klf4 mutants determine preference for DNA methylation status.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.453Å R work:0.248R free:0.285

NDB ID:

5KL2

PDB ID:

5KL2 

Release:

2016-09-14

Title:

Wilms Tumor Protein (WT1) ZnF2-4 in complex with DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.692Å R work:0.164R free:0.193

NDB ID:

5KL3

PDB ID:

5KL3 

Release:

2016-09-14

Title:

Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.449Å R work:0.162R free:0.182

NDB ID:

5KL4

PDB ID:

5KL4 

Release:

2016-09-14

Title:

Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with formylated DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.783Å R work:0.216R free:0.246

NDB ID:

5KL5

PDB ID:

5KL5 

Release:

2016-09-14

Title:

Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with carboxylated DNA

Classification:

Transcription/DNA

Authors:

Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.289Å R work:0.193R free:0.246

NDB ID:

5KL6

PDB ID:

5KL6 

Release:

2016-09-14

Title:

Wilms Tumor Protein (WT1) Q369R ZnF2-4 in complex with DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.641Å R work:0.173R free:0.206

NDB ID:

5KL7

PDB ID:

5KL7 

Release:

2016-09-14

Title:

Wilms Tumor Protein (WT1) ZnF2-4Q369R in complex with carboxylated DNA

Classification:

Transcription/DNA

Authors:

Hashimoto, H., Zhang, X., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.579Å R work:0.163R free:0.193

NDB ID:

5KUB

PDB ID:

5KUB 

Release:

2016-09-14

Title:

Bacillus cereus DNA glycosylase AlkD bound to 7-methylguanine nucleobase and DNA containing an oxocarbenium-intermediate analog

Classification:

HYDROLASE/DNA

Authors:

Parsons, Z.D., Bland, J.M., Mullins, E.A., Eichman, B.F.

Citation:

A Catalytic Role for C-H/ pi Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD.
J.Am.Chem.Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.73Å R work:0.141R free:0.179

NDB ID:

5LIG

PDB ID:

5LIG 

Release:

2016-09-14

Title:

G-Quadruplex formed at the 5'-end of NHEIII_1 Element in human c-MYC promoter bound to triangulenium based fluorescence probe DAOTA-M2

Classification:

DNA

Authors:

Kotar, A., Wang, B., Shivalingam, A., Gonzalez-Garcia, J., Vilar, R., Plavec, J.

Citation:

NMR Structure of a Triangulenium-Based Long-Lived Fluorescence Probe Bound to a G-Quadruplex.
Angew.Chem.Int.Ed.Engl. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

2N5O

PDB ID:

2N5O 

Release:

2016-09-07

Title:

Universal Base oligonucleotide structure

Classification:

DNA

Authors:

Spring-Connell, A.M., Evich, M.G., Debelak, H., Seela, F., Germann, M.W.

Citation:

Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

2N5P

PDB ID:

2N5P 

Release:

2016-09-07

Title:

Universal base control oligonucleotide structure

Classification:

DNA

Authors:

Spring-Connell, A.M., Evich, M.G., Debelak, H., Seela, F., Germann, M.W.

Citation:

Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5DEV

PDB ID:

5DEV 

Release:

2016-09-07

Title:

High resolution structure of CCG DNA repeats at 1.71 angstrom resolution

Classification:

DNA

Authors:

Hou, M.H., Jhan, C.R.

Citation:

High resolution structure of CCG DNA repeats at 1.71 angstrom resolution
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.71Å R work:0.226R free:0.284

NDB ID:

5F7Q

PDB ID:

5F7Q 

Release:

2016-09-07

Title:

ROK repressor Lmo0178 from Listeria monocytogenes bound to operator

Classification:

TRANSCRIPTION/DNA

Authors:

Light, S.H., Anderson, W.F.

Citation:

ROK repressor Lmo0178 from Listeria monocytogenes bound to inducer
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.181R free:0.217

NDB ID:

5IIM

PDB ID:

5IIM 

Release:

2016-09-07

Title:

Crystal structure of the pre-catalytic ternary extension complex of DNA polymerase lambda with an 8-oxo-dG:dA base-pair

Classification:

TRANSFERASE/DNA

Authors:

Burak, M.J., Guja, K.E., Hambardjieva, E., Derkunt, B., Garcia-Diaz, M.

Citation:

A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.941Å R work:0.183R free:0.215

NDB ID:

5JUM

PDB ID:

5JUM 

Release:

2016-09-07

Title:

Crystal Structure of Human DNA Polymerase Eta Inserting dCTP Opposite N-(2'-deoxyguanosin-8- yl)-3-aminobenzanthrone (C8-dG-ABA)

Classification:

transferase/dna

Authors:

Patra, A., Politica, D.A., Stone, M.P., Egli, M.

Citation:

Transletion Polymerase Synthesis across C8-Guanine Adduct of the Environmental Carcinogen 3-Nitrobenzanthrone by Human DNA Polymerase Eta
Chembiochem pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.165R free:0.238

NDB ID:

2N9F

PDB ID:

2N9F 

Release:

2016-08-31

Title:

Glucose as non natural nucleobase

Classification:

DNA

Authors:

Vengut-Climent, E., Gomez-Pinto, I., Lucas, R., Penalver, P., Avino, A., Fonseca Guerra, C., Bickelhaupt, F.M., Eritja, R., Gonzalez, C., Morales, J.C.

Citation:

Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA.
Angew.Chem.Int.Ed.Engl. 55 pp.8643 - 8647 2016

Experiment:

SOLUTION NMR

NDB ID:

2N9H

PDB ID:

2N9H 

Release:

2016-08-31

Title:

Glucose as a nuclease mimic in DNA

Classification:

DNA

Authors:

Vengut-Climent, E., Gomez-Pinto, I., Lucas, R., Penalver, P., Avino, A., Fonseca Guerra, C., Bickelhaupt, F.M., Eritja, R., Gonzalez, C., Morales, J.C.

Citation:

Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA.
Angew.Chem.Int.Ed.Engl. 55 pp.8643 - 8647 2016

Experiment:

SOLUTION NMR

NDB ID:

2RVP

PDB ID:

2RVP 

Release:

2016-08-31

Title:

Solution structure of DNA Containing Metallo-Base-Pair

Classification:

DNA

Authors:

Dairaku, T., Furuita, K., Sato, H., Sebera, J., Nakashima, K., Kondo, J., Yamanaka, D., Kondo, Y., Okamoto, I., Ono, A., Sychrovsky, V., Kojima, C., Tanaka, Y.

Citation:

Structure Determination of an Ag(I) -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with (1) H/(15) N/(109) Ag NMR Spectroscopy
Chemistry pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KBD

PDB ID:

5KBD 

Release:

2016-08-31

Title:

Structural Studies of Transcription Factor p73 DNA Binding Domain Bound to PA26 20-mer Response Element

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nguyen, H.T., Huang, D.

Citation:

Structural Studies of Transcription Factor p73 DNA Binding Domain Bound to PA26 20-mer Response Element
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.278R free:0.307

NDB ID:

5KT2

PDB ID:

5KT2 

Release:

2016-08-31

Title:

Teranry complex of human DNA polymerase iota(26-445) inserting dCMPNPP opposite template G in the presence of Mg2+

Classification:

TRANSFERASE

Authors:

Choi, J.Y., Patra, A., Yeom, M., Lee, Y.S., Zhang, Q., Egli, M., Guengerich, F.P.

Citation:

Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.488Å R work:0.219R free:0.248

NDB ID:

5KT3

PDB ID:

5KT3 

Release:

2016-08-31

Title:

Teranry complex of human DNA polymerase iota(26-445) inserting dCMPNPP opposite template G in the presence of Mn2+

Classification:

TRANSFERASE

Authors:

Choi, J.Y., Patra, A., Yeom, M., Lee, Y.S., Zhang, Q., Egli, M., Guengerich, F.P.

Citation:

Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.64Å R work:0.204R free:0.247

NDB ID:

5KT4

PDB ID:

5KT4 

Release:

2016-08-31

Title:

Teranry complex of human DNA polymerase iota R96G inserting dCMPNPP opposite template G in the presence of Mg2+

Classification:

TRANSFERASE

Authors:

Choi, J.Y., Patra, A., Yeom, M., Lee, Y.S., Zhang, Q., Egli, M., Guengerich, F.P.

Citation:

Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.78Å R work:0.216R free:0.249

NDB ID:

5KT5

PDB ID:

5KT5 

Release:

2016-08-31

Title:

Teranry complex of human DNA polymerase iota R96G inserting dCMPNPP opposite template G in the presence of Mn2+

Classification:

TRANSFERASE

Authors:

Choi, J.Y., Patra, A., Yeom, M., Lee, Y.S., Zhang, Q., Egli, M., Guengerich, F.P.

Citation:

Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.798Å R work:0.223R free:0.266

NDB ID:

5KT6

PDB ID:

5KT6 

Release:

2016-08-31

Title:

Teranry complex of human DNA polymerase iota(1-445) inserting dCMPNPP opposite template G in the presence of Mg2+

Classification:

TRANSFERASE

Authors:

Choi, J.Y., Patra, A., Yeom, M., Lee, Y.S., Zhang, Q., Egli, M., Guengerich, F.P.

Citation:

Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.54Å R work:0.203R free:0.243