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As of 22-Jan-2020 number of released structures: 10593
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7175  Download results as an excel file       Gallery view

NDB ID:

6O8E

PDB ID:

6O8E 

Release:

2020-01-22

Title:

Crystal structure of UvrB bound to duplex DNA with ADP

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lee, S.J., Sung, R.J., Verdine, G.L.

Citation:

Mechanism of DNA Lesion Homing and Recognition by the Uvr Nucleotide Excision Repair System.
Res 2019 pp.5641746 - 5641746 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.61Å R work:0.214R free:0.269

NDB ID:

6O8F

PDB ID:

6O8F 

Release:

2020-01-22

Title:

Crystal structure of UvrB bound to duplex DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lee, S.J., Sung, R.J., Verdine, G.L.

Citation:

Mechanism of DNA Lesion Homing and Recognition by the Uvr Nucleotide Excision Repair System.
Res 2019 pp.5641746 - 5641746 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.81Å R work:0.219R free:0.264

NDB ID:

6O8G

PDB ID:

6O8G 

Release:

2020-01-22

Title:

Crystal structure of UvrB bound to fully duplex DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lee, S.J., Sung, R.J., Verdine, G.L.

Citation:

Mechanism of DNA Lesion Homing and Recognition by the Uvr Nucleotide Excision Repair System.
Res 2019 pp.5641746 - 5641746 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.64Å R work:0.219R free:0.273

NDB ID:

6O8H

PDB ID:

6O8H 

Release:

2020-01-22

Title:

Crystal structure of UvrB mutant bound to duplex DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lee, S.J., Sung, R.J., Verdine, G.L.

Citation:

Mechanism of DNA Lesion Homing and Recognition by the Uvr Nucleotide Excision Repair System.
Res 2019 pp.5641746 - 5641746 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.39Å R work:0.227R free:0.277

NDB ID:

6IPU

PDB ID:

6IPU 

Release:

2020-01-15

Title:

Human nucleosome core particle containing 145 bp of DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.

Citation:

PARP1 exhibits enhanced association and catalytic efficiency with gamma H2A.X-nucleosome.
Nat Commun 10 pp.5751 - 5751 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.99Å R work:0.236R free:0.263

NDB ID:

6J4E

PDB ID:

6J4E 

Release:

2020-01-15

Title:

Crystal structure of the AtWRKY1 domain

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Xu, Y.P., Xu, H., Wang, B., Su, X.D.

Citation:

Crystal structure of the AtWRKY1 domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.126Å R work:0.202R free:0.234

NDB ID:

6J4F

PDB ID:

6J4F 

Release:

2020-01-15

Title:

Crystal structure of the AtWRKY2 domain

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Xu, Y.P., Xu, H., Wang, B., Su, X.D.

Citation:

Crystal structure of the AtWRKY2 domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.187R free:0.225

NDB ID:

6J4G

PDB ID:

6J4G 

Release:

2020-01-15

Title:

Crystal structure of the AtWRKY33 domain

Classification:

DNA BINDING PROTEIN

Authors:

Xu, Y.P., Xu, H., Wang, B., Su, X.D.

Citation:

Crystal structure of the N-terminal DNA binding domain of AtWRKY33
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.203R free:0.246

NDB ID:

6JXD

PDB ID:

6JXD 

Release:

2020-01-15

Title:

Human nucleosome core particle with cohesive end DNA termini

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.

Citation:

PARP1 exhibits enhanced association and catalytic efficiency with gamma H2A.X-nucleosome.
Nat Commun 10 pp.5751 - 5751 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.238R free:0.292

NDB ID:

6K1I

PDB ID:

6K1I 

Release:

2020-01-15

Title:

Human nucleosome core particle with gammaH2A.X variant

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.

Citation:

PARP1 exhibits enhanced association and catalytic efficiency with gamma H2A.X-nucleosome.
Nat Commun 10 pp.5751 - 5751 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.217R free:0.276

NDB ID:

6K1J

PDB ID:

6K1J 

Release:

2020-01-15

Title:

Human nucleosome core particle with H2A.X variant

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.

Citation:

PARP1 exhibits enhanced association and catalytic efficiency with gamma H2A.X-nucleosome.
Nat Commun 10 pp.5751 - 5751 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.264R free:0.319

NDB ID:

6K1K

PDB ID:

6K1K 

Release:

2020-01-15

Title:

Human nucleosome core particle with H2A.X S139E variant

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.

Citation:

PARP1 exhibits enhanced association and catalytic efficiency with gamma H2A.X-nucleosome.
Nat Commun 10 pp.5751 - 5751 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.231R free:0.274

NDB ID:

6K3X

PDB ID:

6K3X 

Release:

2020-01-15

Title:

G-quadruplex complex with linear dinucleotide d(AG)

Classification:

DNA

Authors:

Winnerdy, F.R., Das, P., Heddi, B., Phan, A.T.

Citation:

Solution Structures of a G-Quadruplex Bound to Linear- and Cyclic-Dinucleotides.
J.Am.Chem.Soc. 141 pp.18038 - 18047 2019

Experiment:

SOLUTION NMR

NDB ID:

6K3Y

PDB ID:

6K3Y 

Release:

2020-01-15

Title:

G-quadruplex complex with cyclic dinucleotide 3'-3' cGAMP

Classification:

DNA

Authors:

Winnerdy, F.R., Das, P., Heddi, B., Phan, A.T.

Citation:

Solution Structures of a G-Quadruplex Bound to Linear- and Cyclic-Dinucleotides.
J.Am.Chem.Soc. 141 pp.18038 - 18047 2019

Experiment:

SOLUTION NMR

NDB ID:

6O3T

PDB ID:

6O3T 

Release:

2020-01-15

Title:

Structural basis of FOXC2 and DNA interactions

Classification:

GENE REGULATION/DNA

Authors:

Li, S., Pradhan, L., Ashur, S., Joshi, A., Nam, H.J.

Citation:

Crystal Structure of FOXC2 in Complex with DNA Target.
Acs Omega 4 pp.10906 - 10914 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.06Å R work:0.233R free:0.268

NDB ID:

6UI2

PDB ID:

6UI2 

Release:

2020-01-15

Title:

Structure of human DNA polymerase eta complexed with N7MG in the template base paired with incoming non-hydrolyzable CTP

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Koag, M.C., Jung, H., Kou, Y., Lee, S.

Citation:

Bypass of the Major Alkylative DNA Lesion by Human DNA Polymerase eta.
Molecules 24 pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.17R free:0.237

NDB ID:

6NJU

PDB ID:

6NJU 

Release:

2020-01-08

Title:

Mouse endonuclease G mutant H97A bound to A-DNA

Classification:

RECOMBINATION

Authors:

Vander Zanden, C.M., Ho, E.N., Czarny, R.S., Robertson, A.B., Ho, P.S.

Citation:

Structural adaptation of vertebrate endonuclease G for 5-hydroxymethylcytosine recognition and function
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.222R free:0.291

NDB ID:

6NKR

PDB ID:

6NKR 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.207R free:0.289

NDB ID:

6NKS

PDB ID:

6NKS 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with beta-gamma CHF analog of dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.349Å R work:0.188R free:0.255

NDB ID:

6NKT

PDB ID:

6NKT 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with beta-gamma difluoro analogue of dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.199R free:0.302

NDB ID:

6NKU

PDB ID:

6NKU 

Release:

2020-01-08

Title:

Ternary complex crystal structure of DNA polymerase Beta with ""hot-spot sequence"" with dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure of DNA polymerase Beta with ""hot-spot sequence"" with dGTP
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.174R free:0.21

NDB ID:

6NKV

PDB ID:

6NKV 

Release:

2020-01-08

Title:

Ternary complex crystal structure of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma CHF analogue of dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.164R free:0.202

NDB ID:

6NKW

PDB ID:

6NKW 

Release:

2020-01-08

Title:

Ternary complex crystal structure of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma-methylene dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.174R free:0.216

NDB ID:

6NKX

PDB ID:

6NKX 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with ""hot-spot sequence"" with dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

pdbx_descriptor Ternary complex crystal structure
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.18R free:0.231

NDB ID:

6NKY

PDB ID:

6NKY 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma CHF analogue of dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma CHF analogue of dGTP
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.094Å R work:0.198R free:0.255

NDB ID:

6NKZ

PDB ID:

6NKZ 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma methylene dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma methylene dGTP
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.01Å R work:0.186R free:0.234

NDB ID:

6NL0

PDB ID:

6NL0 

Release:

2020-01-08

Title:

Ternary complex crystal structure of K289M variant of DNA polymerase Beta with ""hot-spot sequence"" with beta-gamma CF2 analogue of dGTP

Classification:

transcription/dna

Authors:

Batra, V.K., Wilson, S.H.

Citation:

Crystal structure of a ternary complex
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.97Å R work:0.192R free:0.237

NDB ID:

6UOK

PDB ID:

6UOK 

Release:

2020-01-08

Title:

Y271G DNA polymerase beta substrate complex with templating cytosine and incoming r8-oxo-GTP

Classification:

TRANSFERASE/DNA

Authors:

Smith, M.R., Alnajjar, K.S., Hoitsma, N.M., Sweasy, J.B., Freudenthal, B.D.

Citation:

Molecular and structural characterization of oxidized ribonucleotide insertion into DNA by human DNA polymerase beta.
J.Biol.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.224R free:0.278

NDB ID:

6UOL

PDB ID:

6UOL 

Release:

2020-01-08

Title:

Y271G DNA polymerase beta substrate complex with a templating cytosine and incoming rGTP

Classification:

TRANSFERASE/DNA

Authors:

Smith, M.R., Alnajjar, K.S., Hoitsma, N.M., Sweasy, J.B., Freudenthal, B.D.

Citation:

Molecular and structural characterization of oxidized ribonucleotide insertion into DNA by human DNA polymerase beta.
J.Biol.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.936Å R work:0.186R free:0.249

NDB ID:

6UOM

PDB ID:

6UOM 

Release:

2020-01-08

Title:

Y271G DNA polymerase beta ternary complex with templating adenine and incoming r8-oxo-GTP

Classification:

TRANSFERASE/DNA

Authors:

Smith, M.R., Alnajjar, K.S., Hoitsma, N.M., Sweasy, J.B., Freudenthal, B.D.

Citation:

Molecular and structural characterization of oxidized ribonucleotide insertion into DNA by human DNA polymerase beta.
J.Biol.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.193R free:0.243

NDB ID:

6JHE

PDB ID:

6JHE 

Release:

2020-01-01

Title:

Crystal Structure of Bacillus subtilis SigW domain 4 in complexed with -35 element DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Kwon, E., Devkota, S.R., Pathak, D., Dahal, P., Kim, D.Y.

Citation:

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis.
Plos One 14 pp.e0221666 - e0221666 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.101Å R work:0.247R free:0.289

NDB ID:

6JVY

PDB ID:

6JVY 

Release:

2020-01-01

Title:

Crystal structure of RBM38 in complex with single-stranded DNA

Classification:

RNA BINDING PROTEIN/DNA

Authors:

Qian, K., Li, M., Wang, J., Zhang, M., Wang, M.

Citation:

Structural basis for mRNA recognition by human RBM38.
Biochem.J. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.003Å R work:0.17R free:0.205

NDB ID:

6P93

PDB ID:

6P93 

Release:

2020-01-01

Title:

Human APE1 K98A AP-endonuclease product complex

Classification:

LYASE/DNA

Authors:

McNeill, D.R., Whitaker, A.M., Stark, W.J., Illuzzi, J.L., McKinnon, P.J., Freudenthal, B.D., Wilson, D.M.

Citation:

Functions of the major abasic endonuclease (APE1) in cell viability and genotoxin resistance.
Mutagenesis pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.171R free:0.226

NDB ID:

6P94

PDB ID:

6P94 

Release:

2020-01-01

Title:

Human APE1 C65A AP-endonuclease product complex

Classification:

LYASE/DNA

Authors:

McNeill, D.R., Whitaker, A.M., Stark, W.J., Illuzzi, J.L., McKinnon, P.J., Freudenthal, B.D., Wilson, D.M.

Citation:

Functions of the major abasic endonuclease (APE1) in cell viability and genotoxin resistance.
Mutagenesis pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.186R free:0.244

NDB ID:

6TR2

PDB ID:

6TR2 

Release:

2020-01-01

Title:

Pre-folded structures govern folding pathways of human telomeric G-quadruplexes

Classification:

DNA

Authors:

Baifan, W., Tjasa, F., Janez, P., Primoz, S.

Citation:

Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6UIR

PDB ID:

6UIR 

Release:

2019-12-25

Title:

HIV-1 M184V reverse transcriptase-DNA complex with (-)-FTC-TP

Classification:

VIRAL PROTEIN

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.639Å R work:0.196R free:0.264

NDB ID:

6UIS

PDB ID:

6UIS 

Release:

2019-12-25

Title:

HIV-1 M184V reverse transcriptase-DNA complex with dCTP

Classification:

VIRAL PROTEIN

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.74834Å R work:0.187R free:0.258

NDB ID:

6UIT

PDB ID:

6UIT 

Release:

2019-12-25

Title:

HIV-1 wild-type reverse transcriptase-DNA complex with dCTP

Classification:

VIRAL PROTEIN

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.80607Å R work:0.185R free:0.256

NDB ID:

6UJX

PDB ID:

6UJX 

Release:

2019-12-25

Title:

HIV-1 wild-type reverse transcriptase-DNA complex with (-)-FTC-TP

Classification:

VIRAL PROTEIN

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.70451Å R work:0.196R free:0.243

NDB ID:

6UJY

PDB ID:

6UJY 

Release:

2019-12-25

Title:

HIV-1 wild-type reverse transcriptase-DNA complex with (-)-3TC-TP

Classification:

VIRAL PROTEIN

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.59456Å R work:0.177R free:0.233

NDB ID:

6UJZ

PDB ID:

6UJZ 

Release:

2019-12-25

Title:

HIV-1 wild-type reverse transcriptase-DNA complex with (+)-FTC-TP

Classification:

Viral Protein/DNA

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.55643Å R work:0.184R free:0.236

NDB ID:

6UK0

PDB ID:

6UK0 

Release:

2019-12-25

Title:

HIV-1 M184V reverse transcriptase-DNA complex

Classification:

VIRAL PROTEIN

Authors:

Hung, M., Tokarsky, E.J., Lagpacan, L., Zhang, L., Suo, Z., Lansdon, E.B.

Citation:

Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol 2 pp.469 - 469 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.75695Å R work:0.205R free:0.26

NDB ID:

6KDI

PDB ID:

6KDI 

Release:

2019-12-18

Title:

Antibody 64M-5 Fab including isoAsp in complex with dT(6-4)T

Classification:

IMMUNE SYSTEM

Authors:

Yokoyama, H., Mizutani, R., Noguchi, S., Hayashida, N.

Citation:

Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.
Sci Rep 9 pp.18494 - 18494 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.259

NDB ID:

6KDV

PDB ID:

6KDV 

Release:

2019-12-18

Title:

Crystal structure of TtCas1-DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, J., Li, J.Z., Wang, J.Y., Sheng, G., Wang, M., Zhao, H.T., Yang, Y.H., Wang, Y.L.

Citation:

Crystal structure of Cas1 in complex with branched DNA.
Sci China Life Sci pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.11Å R work:0.239R free:0.279

NDB ID:

6KVD

PDB ID:

6KVD 

Release:

2019-12-18

Title:

Crystal structure of human nucleosome containing H2A.J

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Tanaka, H., Sato, S., Koyama, M., Kujirai, T., Kurumizaka, H.

Citation:

Biochemical and structural analyses of the nucleosome containing human histone H2A.J.
J.Biochem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.21Å R work:0.212R free:0.257

NDB ID:

6LC1

PDB ID:

6LC1 

Release:

2019-12-18

Title:

Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Jiang, L., Wei, H., Yan, N., Dai, S., Li, J., Qu, L., Chen, X., Guo, M., Chen, Z., Chen, Y.

Citation:

Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter.
Biochem.Biophys.Res.Commun. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.209R free:0.267

NDB ID:

6P0G

PDB ID:

6P0G 

Release:

2019-12-18

Title:

N-terminal domain of Thermococcus Gammatolerans McrB bound to m5C DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hosford, C.J., Bui, A.Q., Chappie, J.S.

Citation:

The structure of the Thermococcus gammatolerans McrB N-terminal domain reveals a new mode of substrate recognition and specificity among McrB homologs.
J.Biol.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.27Å R work:0.237R free:0.289

NDB ID:

6UKE

PDB ID:

6UKE 

Release:

2019-12-18

Title:

HhaI endonuclease in Complex with Iodine-Labelled DNA

Classification:

HYDROLASE/DNA

Authors:

Horton, J.R., Yang, J., Zhang, X., Petronzio, T., Fomenkov, A., Wilson, G.G., Roberts, R.J., Cheng, X.

Citation:

Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.62Å R work:0.171R free:0.203

NDB ID:

6UKF

PDB ID:

6UKF 

Release:

2019-12-18

Title:

HhaI endonuclease in Complex with DNA at 1 Angstrom Resolution

Classification:

HYDROLASE/DNA

Authors:

Horton, J.R., Yang, J., Zhang, X., Petronzio, T., Fomenkov, A., Wilson, G.G., Roberts, R.J., Cheng, X.

Citation:

Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.0Å R work:0.154R free:0.166

NDB ID:

6UKG

PDB ID:

6UKG 

Release:

2019-12-18

Title:

HhaI endonuclease in Complex With DNA in space group P21 (pH 4.2)

Classification:

HYDROLASE/DNA

Authors:

Horton, J.R., Yang, J., Zhang, X., Petronzio, T., Fomenkov, A., Wilson, G.G., Roberts, R.J., Cheng, X.

Citation:

Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.16Å R work:0.14R free:0.157