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As of 12-Dec-2018 number of released structures: 9940
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6737  Download results as an excel file       Gallery view

NDB ID:

 6A7Y

PDB ID:

6A7Y 

Release:

2018-12-12

Title:

Solution structure of an intermolecular leaped V-shape G-quadruplex

Classification:

DNA

Authors:

Wan, C., Fu, W., Jing, H., Zhang, N.

Citation:

NMR solution structure of an asymmetric intermolecular leaped V-shape G-quadruplex: selective recognition of the d(G2NG3NG4) sequence motif by a short linear G-rich DNA probe.
Nucleic Acids Res. pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6MG2

PDB ID:

6MG2 

Release:

2018-12-12

Title:

C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence-C2221 Crystal Form

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Wang, D., Ren, R., Li, J., Sun, D., Huang, Y., Zhang, X., Blumenthal, R., Cheng, X.

Citation:

Structural basis for effects of CpA modifications on C/EBP? binding of DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.928Å R work:0.175R free:0.209

NDB ID:

 6MG3

PDB ID:

6MG3 

Release:

2018-12-12

Title:

V285A Mutant of the C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Wang, D., Ren, R., Li, J., Sun, D., Huang, Y., Zhang, X., Blumenthal, R., Cheng, X.

Citation:

Structural basis for effects of CpA modifications on C/EBP? binding of DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.221R free:0.248

NDB ID:

 6BQU

PDB ID:

6BQU 

Release:

2018-12-05

Title:

Human GR (418-507) in complex with monomeric DNA binding site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pufall, M.A.

Citation:

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.213R free:0.248

NDB ID:

 6BSE

PDB ID:

6BSE 

Release:

2018-12-05

Title:

Glucocorticoid receptor bound to high cooperativity monomer sequence

Classification:

GENE REGULATION

Authors:

Pufall, M.A., Zhang, L.

Citation:

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.35Å R work:0.192R free:0.229

NDB ID:

 6BSF

PDB ID:

6BSF 

Release:

2018-12-05

Title:

Human GR (418-507) in complex with monomeric DNA binding site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pufall, M.A.

Citation:

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.206R free:0.233

NDB ID:

 6FBQ

PDB ID:

6FBQ 

Release:

2018-12-05

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human MEp DR1 Response Element, pH 7.0

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Wolf, J., Poussin-Courmontagne, P., Peluso-Iltis, C., Chebaro, Y., Kieffer, B., Rochel, N.

Citation:

Modulation of RXR-DNA complex assembly by DNA context.
Mol. Cell. Endocrinol. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.163R free:0.197

NDB ID:

 6FBR

PDB ID:

6FBR 

Release:

2018-12-05

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human MEp DR1 Response Element, pH 4.2

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Wolf, J., Poussin-Courmontagne, P., Peluso-Iltis, C., Chebaro, Y., Kieffer, B., Rochel, N.

Citation:

Modulation of RXR-DNA complex assembly by DNA context.
Mol. Cell. Endocrinol. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.178R free:0.231

NDB ID:

 6FQ2

PDB ID:

6FQ2 

Release:

2018-12-05

Title:

Structure of minimal sequence for left -handed G-quadruplex formation

Classification:

DNA

Authors:

Phan, A.T.

Citation:

A minimal sequence for left-handed G-quadruplex formation.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.31Å R work:0.195R free:0.226

NDB ID:

 6N4G

PDB ID:

6N4G 

Release:

2018-12-05

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.4Å R work:0.146R free:0.219

NDB ID:

 6GZ7

PDB ID:

6GZ7 

Release:

2018-11-28

Title:

Polyamide - DNA complex NMR structure

Classification:

UNKNOWN FUNCTION

Authors:

Burley, G., Padroni, G., Parkinson, J., Welte, T.

Citation:

Structural and Kinetic Profiling of Allosteric Modulation of Duplex DNA Induced by DNA-Binding Polyamide Analogues.
Chemistry pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6IG1

PDB ID:

6IG1 

Release:

2018-11-28

Title:

DNA polymerase IV - DNA ternary complex 10

Classification:

DNA BINDING PROTEIN

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.97Å R work:0.201R free:0.243

NDB ID:

 5YTC

PDB ID:

5YTC 

Release:

2018-11-21

Title:

Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the unnatural base M-fC pair with dATP in the active site

Classification:

TRANSFERASE/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.28Å R work:0.194R free:0.257

NDB ID:

 5YTD

PDB ID:

5YTD 

Release:

2018-11-21

Title:

large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the natural base pair 5fC:dGTP

Classification:

REPLICATION/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.196R free:0.238

NDB ID:

 5YTE

PDB ID:

5YTE 

Release:

2018-11-21

Title:

Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with with natural dT:dATP base pair

Classification:

REPLICATION/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.21Å R work:0.184R free:0.237

NDB ID:

 5YTF

PDB ID:

5YTF 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dA

Classification:

TRANSFERASE/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.98Å R work:0.18R free:0.232

NDB ID:

 5YTG

PDB ID:

5YTG 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base I-fC pair with dA

Classification:

TRANSFERASE/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.07Å R work:0.198R free:0.252

NDB ID:

 5YTH

PDB ID:

5YTH 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dG

Classification:

TRANSFERASE/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.53Å R work:0.203R free:0.274

NDB ID:

 5Z3N

PDB ID:

5Z3N 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base 5fC pair with dA

Classification:

REPLICATION/DNA

Authors:

Yi, C., Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q.

Citation:

Unnatural cytosine bases recognized as thymines by DNA polymerases via the formation of the Watson-Crick geometry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.91Å R work:0.183R free:0.229

NDB ID:

 5ZVA

PDB ID:

5ZVA 

Release:

2018-11-21

Title:

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dC9)

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Cheng, C., Zhang, T., Wang, C., Lan, W., Ding, J., Cao, C.

Citation:

Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem. 36 pp.1241 - 1248 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.16R free:0.208

NDB ID:

 5ZVB

PDB ID:

5ZVB 

Release:

2018-11-21

Title:

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Cheng, C., Zhang, T., Wang, C., Lan, W., Ding, J., Cao, C.

Citation:

Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem. 36 pp.1241 - 1248 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.171R free:0.22

NDB ID:

 5YBD

PDB ID:

5YBD 

Release:

2018-11-14

Title:

X-ray structure of ETS domain of Ergp55 in complex with E74DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sharma, R., Gangwar, S.P., Saxena, A.K.

Citation:

Comparative structure analysis of the ETSi domain of ERG3 and its complex with the E74 promoter DNA sequence
Acta Crystallogr F Struct Biol Commun 74 pp.656 - 663 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.769Å R work:0.204R free:0.281

NDB ID:

 5YUZ

PDB ID:

5YUZ 

Release:

2018-11-14

Title:

DNA polymerase IV - DNA ternary complex 11

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.83Å R work:0.197R free:0.232

NDB ID:

 5YV0

PDB ID:

5YV0 

Release:

2018-11-14

Title:

DNA polymerase IV - DNA ternary complex 12

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.09Å R work:0.192R free:0.24

NDB ID:

 6MC2

PDB ID:

6MC2 

Release:

2018-11-14

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.05Å R work:0.106R free:0.137

NDB ID:

 6MC3

PDB ID:

6MC3 

Release:

2018-11-14

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.57Å R work:0.2R free:0.243

NDB ID:

 6MC4

PDB ID:

6MC4 

Release:

2018-11-14

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.228R free:0.268

NDB ID:

 5YUS

PDB ID:

5YUS 

Release:

2018-11-07

Title:

DNA polymerase IV - DNA ternary complex 2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.94Å R work:0.189R free:0.227

NDB ID:

 5YUW

PDB ID:

5YUW 

Release:

2018-11-07

Title:

DNA polymerase IV - DNA ternary complex 6

Classification:

DNA BINDING PROTEIN/DAN

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.124Å R work:0.188R free:0.231

NDB ID:

 5YV3

PDB ID:

5YV3 

Release:

2018-11-07

Title:

DNA polymerase IV - DNA ternary complex 7

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.03Å R work:0.202R free:0.248

NDB ID:

 5ZLV

PDB ID:

5ZLV 

Release:

2018-11-07

Title:

DNA polymerase IV - DNA ternary complex with 50mM MgCl2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.35Å R work:0.188R free:0.248

NDB ID:

 6A47

PDB ID:

6A47 

Release:

2018-11-07

Title:

Structure of TREX2 in complex with a Y structured dsDNA

Classification:

DNA BINDING PROTEIN

Authors:

Cheng, H.L., Lin, C.T., Huang, K.W., Wang, S., Lin, Y.T., Toh, S.I., Hsiao, Y.Y.

Citation:

Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.163R free:0.191

NDB ID:

 6A4B

PDB ID:

6A4B 

Release:

2018-11-07

Title:

Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang

Classification:

DNA BINDING PROTEIN

Authors:

Cheng, H.L., Lin, C.T., Huang, K.W., Wang, S., Lin, Y.T., Toh, S.I., Hsiao, Y.Y.

Citation:

Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.224R free:0.263

NDB ID:

 6E93

PDB ID:

6E93 

Release:

2018-11-07

Title:

Crystal Structure of ZBTB38 C-terminal Zinc Fingers 6-9 in complex with methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hudson, N.O., Whitby, F.G., Buck-Koehntop, B.A.

Citation:

Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38.
J. Biol. Chem. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.747Å R work:0.186R free:0.211

NDB ID:

 6E94

PDB ID:

6E94 

Release:

2018-11-07

Title:

Crystal Structure of ZBTB38 C-terminal Zinc Fingers 6-9 K1055R in complex with methylated DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hudson, N.O., Whitby, F.G., Buck-Koehntop, B.A.

Citation:

Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38.
J. Biol. Chem. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.594Å R work:0.193R free:0.218

NDB ID:

 6GDH

PDB ID:

6GDH 

Release:

2018-11-07

Title:

Holliday Junctions formed from Telomeric DNA

Classification:

RECOMBINATION

Authors:

Haider, S., Li, P., Khiali, S., Munnur, D., Ramanathan, A., Parkinson, G.N.

Citation:

Holliday Junctions Formed from Human Telomeric DNA.
J. Am. Chem. Soc. 140 pp.15366 - 15374 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.85Å R work:0.228R free:0.272

NDB ID:

 6GDN

PDB ID:

6GDN 

Release:

2018-11-07

Title:

Holliday Junctions formed from Telomeric DNA

Classification:

RECOMBINATION

Authors:

Haider, S., Li, P., Khiali, S., Munnur, D., Ramanathan, A., Parkinson, G.N.

Citation:

Holliday Junctions Formed from Human Telomeric DNA.
J. Am. Chem. Soc. 140 pp.15366 - 15374 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.234R free:0.279

NDB ID:

 6GDS

PDB ID:

6GDS 

Release:

2018-11-07

Title:

Holliday Junctions formed from Telomeric DNA

Classification:

RECOMBINATION

Authors:

Haider, S., Li, P., Khiali, S., Munnur, D., Ramanathan, A., Parkinson, G.N.

Citation:

Holliday Junctions Formed from Human Telomeric DNA.
J. Am. Chem. Soc. 140 pp.15366 - 15374 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.95Å R work:0.242R free:0.286

NDB ID:

 5WCU

PDB ID:

5WCU 

Release:

2018-10-31

Title:

Crystal structure of 167 bp nucleosome bound to the globular domain of linker histone H5

Classification:

CHROMATIN BINDING PROTEIN/DNA

Authors:

Zhou, B.R., Jiang, J., Ghirlando, R., Norouzi, D., Sathish Yadav, K.N., Feng, H., Wang, R., Zhang, P., Zhurkin, V., Bai, Y.

Citation:

Revisit of Reconstituted 30-nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures.
J. Mol. Biol. 430 pp.3093 - 3110 2018

Experiment:

 X-RAY DIFFRACTION Resolution:5.53Å R work:0.188R free:0.238

NDB ID:

 5Z6Z

PDB ID:

5Z6Z 

Release:

2018-10-31

Title:

Crystal structure of human DUX4 homeodomains bound to DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Li, Y., Wu, B., Liu, H., Gao, Y., Yang, C., Chen, X., Zhang, J., Chen, Y., Gu, Y., Li, J., Ma, J., Gan, J.

Citation:

Structural basis for multiple gene regulation by human DUX4.
Biochem. Biophys. Res. Commun. 505 pp.1161 - 1167 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.301Å R work:0.211R free:0.25

NDB ID:

 5ZFW

PDB ID:

5ZFW 

Release:

2018-10-31

Title:

Crystal structure of human DUX4 homeodomains bound to A11G DNA mutant

Classification:

TRANSCRIPTION/DNA

Authors:

Li, Y., Wu, B., Liu, H., Gao, Y., Yang, C., Chen, X., Zhang, J., Chen, Y., Gu, Y., Li, J., Ma, J., Gan, J.

Citation:

Structural basis for multiple gene regulation by human DUX4.
Biochem. Biophys. Res. Commun. 505 pp.1161 - 1167 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.103Å R work:0.192R free:0.227

NDB ID:

 5ZFY

PDB ID:

5ZFY 

Release:

2018-10-31

Title:

Crystal structure of human DUX4 homeodomains bound to A12C DNA mutant

Classification:

TRANSCRIPTION/DNA

Authors:

Li, Y., Wu, B., Liu, H., Gao, Y., Yang, C., Chen, X., Zhang, J., Chen, Y., Gu, Y., Li, J., Ma, J., Gan, J.

Citation:

Structural basis for multiple gene regulation by human DUX4.
Biochem. Biophys. Res. Commun. 505 pp.1161 - 1167 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.184R free:0.216

NDB ID:

 5ZFZ

PDB ID:

5ZFZ 

Release:

2018-10-31

Title:

Crystal structure of human DUX4 homeodomains bound to A12T DNA mutant

Classification:

TRANSCRIPTION/DNA

Authors:

Li, Y., Wu, B., Liu, H., Gao, Y., Yang, C., Chen, X., Zhang, J., Chen, Y., Gu, Y., Li, J., Ma, J., Gan, J.

Citation:

Structural basis for multiple gene regulation by human DUX4.
Biochem. Biophys. Res. Commun. 505 pp.1161 - 1167 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.185R free:0.221

NDB ID:

 6AI6

PDB ID:

6AI6 

Release:

2018-10-31

Title:

Crystal structure of SpCas9-NG

Classification:

HYDROLASE/RNA/DNA

Authors:

Nishimasu, H., Shi, X., Ishiguro, S., Gao, L., Hirano, S., Okazaki, S., Noda, T., Abudayyeh, O.O., Gootenberg, J.S., Mori, H., Oura, S., Holmes, B., Tanaka, M., Seki, M., Hirano, H., Aburatani, H., Ishitani, R., Ikawa, M., Yachie, N., Zhang, F., Nureki, O.

Citation:

Engineered CRISPR-Cas9 nuclease with expanded targeting space
Science 361 pp.1259 - 1262 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.217R free:0.243

NDB ID:

 6BEK

PDB ID:

6BEK 

Release:

2018-10-31

Title:

Structure of sIHF bound to an 8bp palindromic DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Nanji, T.N., Gehrke, E.J., Shen, Y., Gloyd, M., Kirby, C.D., Huynh, A., Razi, A., Ortega, J., Elliott, M.A., Guarne, A.

Citation:

Streptomyces IHF uses multiple interfaces to bind DNA and condense nucleoids
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.201R free:0.233

NDB ID:

 6BEL

PDB ID:

6BEL 

Release:

2018-10-31

Title:

Ternary complex crystal structure of DNA polymerase Beta with R-isomer of beta-gamma-CHF-dCTP

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs.
Biochemistry 57 pp.3934 - 3944 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.898Å R work:0.167R free:0.201

NDB ID:

 6BEM

PDB ID:

6BEM 

Release:

2018-10-31

Title:

Ternary complex crystal structure of DNA polymerase Beta with S-isomer of beta-gamma-CHCL-dCTP

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs.
Biochemistry 57 pp.3934 - 3944 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.88Å R work:0.187R free:0.226

NDB ID:

 6BHJ

PDB ID:

6BHJ 

Release:

2018-10-31

Title:

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer

Classification:

TRANSFERASE/DNA

Authors:

Tuske, S., Zheng, J., Olson, E.D., Ruiz, F.X., Pascal, B.D., Bauman, J.D., Das, K., DeStefano, J.J., Musier-Forsyth, K., Griffin, P.R., Arnold, E.

Citation:

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.81Å R work:0.203R free:0.244

NDB ID:

 6DSU

PDB ID:

6DSU 

Release:

2018-10-31

Title:

Bst DNA polymerase I pre-insertion complex structure

Classification:

TRANSFERASE/DNA

Authors:

Chim, N., Jackson, L.N., Trinh, A.M., Chaput, J.C.

Citation:

Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife 7 pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.98Å R work:0.222R free:0.271

NDB ID:

 6DSV

PDB ID:

6DSV 

Release:

2018-10-31

Title:

Bst DNA polymerase I post-chemistry (n+2) structure

Classification:

Transferase/DNA

Authors:

Chim, N., Jackson, L.N., Trinh, A.M., Chaput, J.C.

Citation:

Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife 7 pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.99Å R work:0.192R free:0.228

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