A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 8024  Download results as an excel file       Gallery view

NDB ID:

7MSV

PDB ID:

7MSV 

Release:

2021-10-20

Title:

Solution Structure of Berberine Bound to a dGMP Fill-in G-Quadruplex in the PDGFR-b Promoter

Classification:

DNA

Authors:

Wang, K.B., Dickerhoff, J., Yang, D.

Citation:

Solution Structure of Ternary Complex of Berberine Bound to a dGMP-Fill-In Vacancy G-Quadruplex Formed in the PDGFR-beta Promoter.
J.Am.Chem.Soc. pp. - 2021

Experiment:

SOLUTION NMR

NDB ID:

7MVS

PDB ID:

7MVS 

Release:

2021-10-20

Title:

DNA gyrase complexed with uncleaved DNA and Compound 7 to 2.6A resolution

Classification:

ISOMERASE/DNA/ANTIBIOTIC

Authors:

Lu, Y., Vibhute, S., Li, L., Okumu, A., Ratigan, S.C., Nolan, S., Papa, J.L., Mann, C.A., English, A., Chen, A., Seffernick, J.T., Koci, B., Duncan, L.R., Roth, B., Cummings, J.E., Slayden, R.A., Lindert, S., McElroy, C.A., Wozniak, D.J., Yalowich, J., Mitton-Fry, M.J.

Citation:

Optimization of TopoIV Potency, ADMET Properties, and hERG Inhibition of 5-Amino-1,3-dioxane-Linked Novel Bacterial Topoisomerase Inhibitors: Identification of a Lead with In Vivo Efficacy against MRSA.
J.Med.Chem. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.60137Å R work:0.195R free:0.251

NDB ID:

7R96

PDB ID:

7R96 

Release:

2021-10-20

Title:

Self-Assembled 3D DNA Hexagonal Tensegrity Triangle

Classification:

DNA

Authors:

Lu, B., Vecchioni, S., Ohayon, Y.P., Sha, R., Woloszyn, K., Yang, B., Mao, C., Seeman, N.C.

Citation:

3D Hexagonal Arrangement of DNA Tensegrity Triangles.
Acs Nano pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:5.68Å R work:0.119R free:0.143

NDB ID:

7VJQ

PDB ID:

7VJQ 

Release:

2021-10-20

Title:

Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.

Citation:

Pectobacterium phage ZF40 apo-aca2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.79Å R work:0.19R free:0.218

NDB ID:

7D8T

PDB ID:

7D8T 

Release:

2021-10-13

Title:

MITF bHLHLZ complex with M-box DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, Z., Chen, K., Yu, J., Liang, Y., Zhao, Z., Bennet, S., Xu, P., Park, C., Fallahi, M., Dai, J., Feng, Y., Chase, P., Spicer, T., Pan, L., Fang, P., Yu, B., Wang, J., Guo, M., Fisher, D., Wang, J.

Citation:

Targeting the Lineage-specific Dynamic Microphthalmia-Associated Transcription Factor (MITF) for melanoma treatment
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.201Å R work:0.203R free:0.234

NDB ID:

7F2F

PDB ID:

7F2F 

Release:

2021-10-13

Title:

The complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.

Classification:

TRANSCRIPTION

Authors:

Gui, W., Xue, L., Yue, J., Kuang, Z., Jin, Y., Niu, L.

Citation:

Crystal structure of the complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.
Acta Crystallogr.,Sect.F 77 pp.341 - 347 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.245R free:0.283

NDB ID:

7N8S

PDB ID:

7N8S 

Release:

2021-10-13

Title:

LINE-1 endonuclease domain complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Miller, I., Totrov, M., Korotchkina, L., Kazyulkin, D.N., Gudkov, A.V., Korolev, S.

Citation:

Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease.
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.79Å R work:0.263R free:0.321

NDB ID:

7N94

PDB ID:

7N94 

Release:

2021-10-13

Title:

LINE-1 endonuclease domain complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Miller, I., Totrov, M., Korotchkina, L., Kazyulkin, D.N., Gudkov, A.V., Korolev, S.

Citation:

Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease.
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.214R free:0.28

NDB ID:

7OM3

PDB ID:

7OM3 

Release:

2021-10-13

Title:

Crystal structure of KOD DNA Polymerase in a binary complex with Hypoxanthine containing template

Classification:

REPLICATION

Authors:

Kropp, H.M., Ludmann, S., Diederichs, K., Betz, K., Marx, A.

Citation:

Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase.
Chembiochem pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.92Å R work:0.182R free:0.233

NDB ID:

7OMB

PDB ID:

7OMB 

Release:

2021-10-13

Title:

Crystal structure of KOD DNA Polymerase in a ternary complex with a p/t duplex containing an extended 5' single stranded template overhang

Classification:

REPLICATION

Authors:

Kropp, H.M., Ludmann, S., Diederichs, K., Betz, K., Marx, A.

Citation:

Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase.
Chembiochem pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.01Å R work:0.2R free:0.236

NDB ID:

7OMG

PDB ID:

7OMG 

Release:

2021-10-13

Title:

Crystal structure of KOD DNA Polymerase in a ternary complex with an Uracil containing template

Classification:

REPLICATION

Authors:

Kropp, H.M., Ludmann, S., Diederichs, K., Betz, K., Marx, A.

Citation:

Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase.
Chembiochem pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.209R free:0.247

NDB ID:

7SDP

PDB ID:

7SDP 

Release:

2021-10-13

Title:

Replication Initiator Protein REPE54 and cognate DNA sequence with terminal three prime phosphates.

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ward, A.R., Dmytriw, S., Vajapayajula, A., Snow, C.D.

Citation:

Stabilizing DNA-protein co-crystals via in crystallo chemical ligation of the DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.01Å R work:0.181R free:0.235

NDB ID:

7SGC

PDB ID:

7SGC 

Release:

2021-10-13

Title:

Replication Initiator Protein REPE54 and cognate DNA sequence with terminal five prime phosphates.

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ward, A.R., Dmytriw, S., Vajapayajula, A., Snow, C.D.

Citation:

Stabilizing DNA-protein co-crystals via in crystallo chemical ligation of the DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.185R free:0.245

NDB ID:

7VJM

PDB ID:

7VJM 

Release:

2021-10-13

Title:

Aca1 in complex with 19bp palindromic DNA substrate

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.

Citation:

Aca1 in complex with 19bp palindromic DNA substrate
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.194R free:0.253

NDB ID:

7D3T

PDB ID:

7D3T 

Release:

2021-10-06

Title:

Crystal structure of OSPHR2 in complex with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Guan, Z.Y., Zhang, Q.X., Zhang, Z.F., Zuo, J.Q., Chen, J., Cheng, P., Wang, Q., Pei, K., Zhang, D.L., Zou, T.T., Yan, J.J., Liu, Z.

Citation:

Mechanism of SPX2 sensing inositol pyrophosphate signal to deactivate PHR2 in rice phosphate homeostasis maintenance
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.212R free:0.257

NDB ID:

7D3V

PDB ID:

7D3V 

Release:

2021-10-06

Title:

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, Y.P., Lan, W.X., Wang, C.X., Cao, C.Y.

Citation:

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7D3W

PDB ID:

7D3W 

Release:

2021-10-06

Title:

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, Y.P., Lan, W.X., Wang, C.X., Cao, C.Y.

Citation:

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7D3X

PDB ID:

7D3X 

Release:

2021-10-06

Title:

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3A

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, Y.P., Lan, W.X., Wang, C.X., Cao, C.Y.

Citation:

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7SB8

PDB ID:

7SB8 

Release:

2021-10-06

Title:

d(GA(CGA)5) parallel-stranded homo-duplex

Classification:

DNA

Authors:

Luteran, E.M., Paukstelis, P.J.

Citation:

The parallel-stranded d(CGA) duplex is a highly predictable structural motif with two conformationally distinct strands
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.317Å R work:0.171R free:0.213

NDB ID:

7SB9

PDB ID:

7SB9 

Release:

2021-10-06

Title:

d((CGA)5TGA) parallel-stranded homo-duplex

Classification:

DNA

Authors:

Luteran, E.M., Paukstelis, P.J.

Citation:

The parallel-stranded d(CGA) duplex is a highly predictable structural motif with two conformationally distinct strands
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.199R free:0.252

NDB ID:

7DO1

PDB ID:

7DO1 

Release:

2021-09-29

Title:

Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression

Classification:

DNA

Authors:

Fu, W., Jing, H.T., Xu, X., Xu, S., Wang, T., Hu, W., Li, H., Zhang, N.

Citation:

Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T.
Nucleic Acids Res. pp. - 2021

Experiment:

SOLUTION NMR

NDB ID:

7DVV

PDB ID:

7DVV 

Release:

2021-09-29

Title:

Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer)

Classification:

TRANSCRIPTION

Authors:

Nishinaga, M., Sugimoto, H., Nishitani, Y., Nagai, S., Nagatoishi, S., Muraki, N., Tosha, T., Tsumoto, K., Aono, S., Shiro, Y., Sawai, H.

Citation:

Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol 4 pp.467 - 467 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.49Å R work:0.217R free:0.246

NDB ID:

7D31

PDB ID:

7D31 

Release:

2021-09-22

Title:

The TBA-Pb2+ complex in P41212 space group

Classification:

DNA

Authors:

Liu, H.H., Gao, Y.Q., Sheng, J., Gan, J.H.

Citation:

The TBA-Pb2+ complex in P41212 space group
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.396Å R work:0.126R free:0.148

NDB ID:

7D32

PDB ID:

7D32 

Release:

2021-09-22

Title:

The TBA-Pb2+ complex in P41212 space group

Classification:

DNA

Authors:

Liu, H.H., Gao, Y.Q., Sheng, J., Gan, J.H.

Citation:

The TBA-Pb2+ complex in P41212 space group
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.707Å R work:0.188R free:0.214

NDB ID:

7D33

PDB ID:

7D33 

Release:

2021-09-22

Title:

The Pb2+ complexed structure of TBA G8C mutant

Classification:

DNA

Authors:

Liu, H.H., Gao, Y.Q., Sheng, J., Gan, J.H.

Citation:

The Pb2+ complexed structure of TBA G8C mutant
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.117Å R work:0.212R free:0.239

NDB ID:

7ET4

PDB ID:

7ET4 

Release:

2021-09-15

Title:

Crystal structure of Arabidopsis TEM1 AP2 domain

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hu, H., Tian, S., Xie, G., Liu, R., Wang, N., Li, S., He, Y., Du, J.

Citation:

TEM1 combinatorially binds to FLOWERING LOCUS T and recruits a Polycomb factor to repress the floral transition in Arabidopsis.
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.202R free:0.233

NDB ID:

7ET6

PDB ID:

7ET6 

Release:

2021-09-15

Title:

Crystal structure of Arabidopsis TEM1 B3-DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hu, H., Tian, S., Xie, G., Liu, R., Wang, N., Li, S., He, Y., Du, J.

Citation:

TEM1 combinatorially binds to FLOWERING LOCUS T and recruits a Polycomb factor to repress the floral transition in Arabidopsis.
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.231R free:0.266

NDB ID:

7OX7

PDB ID:

7OX7 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with TRAC chimeric RNA-DNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.209R free:0.229

NDB ID:

7OX8

PDB ID:

7OX8 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with TRAC full RNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.209R free:0.247

NDB ID:

7OX9

PDB ID:

7OX9 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with AAVS1 all-RNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.194R free:0.232

NDB ID:

7OXA

PDB ID:

7OXA 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with AAVS1 chimeric RNA-DNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.197R free:0.225

NDB ID:

7RFK

PDB ID:

7RFK 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor Sinefungin

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Ren, R., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA.
Epigenetics pp.1 - 12 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.188R free:0.224

NDB ID:

7RFL

PDB ID:

7RFL 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC0946

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Ren, R., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA.
Epigenetics pp.1 - 12 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.38Å R work:0.204R free:0.233

NDB ID:

7RFM

PDB ID:

7RFM 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor EPZ004777

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Ren, R., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA.
Epigenetics pp.1 - 12 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.68Å R work:0.181R free:0.228

NDB ID:

7RFN

PDB ID:

7RFN 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC8158

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Ren, R., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA.
Epigenetics pp.1 - 12 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.194R free:0.231

NDB ID:

7JVT

PDB ID:

7JVT 

Release:

2021-09-08

Title:

Crystal structure of a lambda-186 hybrid repressor

Classification:

GENE REGULATION/DNA

Authors:

Truong, J.Q., Pukala, T., Bruning, J.B., Shearwin, K.S.

Citation:

Crystal structure of a hybrid lambda-186 repressor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.16Å R work:0.228R free:0.281

NDB ID:

7KUL

PDB ID:

7KUL 

Release:

2021-09-08

Title:

DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl. 60 pp.22925 - 22932 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.64Å R work:0.207R free:0.246

NDB ID:

6VEZ

PDB ID:

6VEZ 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.875Å R work:0.166R free:0.205

NDB ID:

6VF0

PDB ID:

6VF0 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.58Å R work:0.163R free:0.187

NDB ID:

6VF1

PDB ID:

6VF1 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.68Å R work:0.162R free:0.187

NDB ID:

6VF2

PDB ID:

6VF2 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.168R free:0.192

NDB ID:

6VF3

PDB ID:

6VF3 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.521Å R work:0.162R free:0.179

NDB ID:

6VF4

PDB ID:

6VF4 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.167R free:0.192

NDB ID:

6VF5

PDB ID:

6VF5 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.164R free:0.19

NDB ID:

6VF6

PDB ID:

6VF6 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.165R free:0.188

NDB ID:

6VF7

PDB ID:

6VF7 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.871Å R work:0.165R free:0.196

NDB ID:

6VF8

PDB ID:

6VF8 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.168R free:0.191

NDB ID:

6VF9

PDB ID:

6VF9 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.165R free:0.181

NDB ID:

6VFA

PDB ID:

6VFA 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.76Å R work:0.174R free:0.202

NDB ID:

6VFB

PDB ID:

6VFB 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.166R free:0.181