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As of 19-Sep-2018 number of released structures: 9779
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6636  Download results as an excel file       Gallery view

NDB ID:

5Z80

PDB ID:

5Z80 

Release:

2018-09-19

Title:

Solution structure for the 1:1 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex

Classification:

DNA

Authors:

Liu, W., Zhong, Y.F., Liu, L.Y., Shen, C.T., Zeng, W., Wang, F., Yang, D., Mao, Z.W.

Citation:

Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding
Nat Commun 9 pp.3496 - 3496 2018

Experiment:

SOLUTION NMR

NDB ID:

5Z8F

PDB ID:

5Z8F 

Release:

2018-09-19

Title:

Solution structure for the unique dimeric 4:2 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex

Classification:

DNA

Authors:

Liu, W., Zhong, Y.F., Liu, L.Y., Shen, C.T., Zeng, W., Wang, F., Yang, D., Mao, Z.W.

Citation:

Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding
Nat Commun 9 pp.3496 - 3496 2018

Experiment:

SOLUTION NMR

NDB ID:

5ZMC

PDB ID:

5ZMC 

Release:

2018-09-19

Title:

Structural Basis for Reactivation of -146C>T Mutant TERT Promoter by cooperative binding of p52 and ETS1/2

Classification:

TRANSCRIPTION/DNA

Authors:

Xu, X., Li, Y., Bharath, S.R., Ozturk, M.B., Bowler, M.W., Loo, B.Z.L., Tergaonkar, V., Song, H.

Citation:

Structural basis for reactivating the mutant TERT promoter by cooperative binding of p52 and ETS1
Nat Commun 9 pp.3183 - 3183 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.99Å R work:0.258R free:0.288

NDB ID:

5ZYT

PDB ID:

5ZYT 

Release:

2018-09-19

Title:

Crystal structure of human MGME1 with 3' overhang double strand DNA3

Classification:

DNA BINDING PROTEIN

Authors:

Yang, C., Gan, J.

Citation:

crystal structure of human MGME1 with 3' overhang double strand DNA3
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.702Å R work:0.249R free:0.296

NDB ID:

5ZYU

PDB ID:

5ZYU 

Release:

2018-09-19

Title:

Crytal struture of humanMGME1 with single strand DNA2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, C., Gan, J.

Citation:

crytal struture of humanMGME1 with single strand DNA2
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.752Å R work:0.173R free:0.199

NDB ID:

5ZYV

PDB ID:

5ZYV 

Release:

2018-09-19

Title:

Crystal structure of human MGME1 with single strand DNA2 and Ca2+

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, C., Gan, J.

Citation:

crystal structure of human MGME1 with single strand DNA2 and Ca2+
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.72Å R work:0.211R free:0.253

NDB ID:

6B1Q

PDB ID:

6B1Q 

Release:

2018-09-19

Title:

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hoshika, S., Singh, I., Switzer, C., Molt, R.W., Leal, N.A., Kim, M.J., Kim, M.S., Kim, H.J., Georgiadis, M.M., Benner, S.A.

Citation:

""Skinny"" and ""Fat"" DNA: Two New Double Helices.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.204R free:0.237

NDB ID:

6B1R

PDB ID:

6B1R 

Release:

2018-09-19

Title:

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hoshika, S., Singh, I., Switzer, C., Molt, R.W., Leal, N.A., Kim, M.J., Kim, M.S., Kim, H.J., Georgiadis, M.M., Benner, S.A.

Citation:

""Skinny"" and ""Fat"" DNA: Two New Double Helices.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.202R free:0.229

NDB ID:

6B1S

PDB ID:

6B1S 

Release:

2018-09-19

Title:

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hoshika, S., Singh, I., Switzer, C., Molt, R.W., Leal, N.A., Kim, M.J., Kim, M.S., Kim, H.J., Georgiadis, M.M., Benner, S.A.

Citation:

""Skinny"" and ""Fat"" DNA: Two New Double Helices.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.216R free:0.251

NDB ID:

6DT1

PDB ID:

6DT1 

Release:

2018-09-19

Title:

Crystal structure of the ligase from bacteriophage T4 complexed with DNA intermediate

Classification:

LIGASE/DNA

Authors:

Shi, K., Bohl, T.E., Park, J., Zasada, A., Malik, S., Banerjee, S., Tran, V., Li, N., Yin, Z., Kurniawan, F., Orellana, K., Aihara, H.

Citation:

T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.169R free:0.219

NDB ID:

6DWW

PDB ID:

6DWW 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (A/T) DNA and Mn2+

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (A/T) DNA and Mn2+
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.851Å R work:0.199R free:0.263

NDB ID:

6DWY

PDB ID:

6DWY 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.259R free:0.295

NDB ID:

6DWZ

PDB ID:

6DWZ 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (C/G) DNA

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.202R free:0.298

NDB ID:

6DX0

PDB ID:

6DX0 

Release:

2018-09-19

Title:

Hermes transposase deletion dimer complex with (A/T) DNA

Classification:

dna binding protein/dna

Authors:

Dyda, F., Hickman, A.B.

Citation:

Hermes transposase deletion dimer complex with (C/G) DNA and Ca
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.225R free:0.304

NDB ID:

6GCD

PDB ID:

6GCD 

Release:

2018-09-19

Title:

DNA binding domain of restriction endonuclease McrBC in complex with 5-hydroxymethylcytosine DNA

Classification:

DNA BINDING PROTEIN

Authors:

Zagorskaite, E., Manakova, E., Sasnauskas, G.

Citation:

Recognition of modified cytosine variants by the DNA binding domain of methyl-directed endonuclease McrBC.
FEBS Lett. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.165R free:0.214

NDB ID:

6GCE

PDB ID:

6GCE 

Release:

2018-09-19

Title:

DNA binding domain of restriction endonuclease McrBC in complex with 5-formylcytosine DNA

Classification:

DNA BINDING PROTEIN

Authors:

Zagorskaite, E., Manakova, E., Sasnauskas, G.

Citation:

Recognition of modified cytosine variants by the DNA binding domain of methyl-directed endonuclease McrBC.
FEBS Lett. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.167R free:0.205

NDB ID:

6GCF

PDB ID:

6GCF 

Release:

2018-09-19

Title:

DNA binding domain of restriction endonuclease McrBC in complex with N4-methylcytosine DNA

Classification:

DNA BINDING PROTEIN

Authors:

Zagorskaite, E., Manakova, E., Sasnauskas, G.

Citation:

Recognition of modified cytosine variants by the DNA binding domain of methyl-directed endonuclease McrBC.
FEBS Lett. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.134R free:0.178

NDB ID:

6AU4

PDB ID:

6AU4 

Release:

2018-09-12

Title:

Crystal structure of the major quadruplex formed in the human c-MYC promoter

Classification:

DNA

Authors:

Stump, S., Mou, T.C., Sprang, S.R., Natale, N.R., Beall, H.D.

Citation:

First crystal structure of the major quadruplex formed in the promoter region of the human c-MYC oncogene
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.22R free:0.245

NDB ID:

6M7O

PDB ID:

6M7O 

Release:

2018-09-12

Title:

Human DNA polymerase eta ternary complex with Mn2+ and dTMPNPP oppositing cdA

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.231R free:0.273

NDB ID:

6M7P

PDB ID:

6M7P 

Release:

2018-09-12

Title:

Human DNA polymerase eta extension complex with cdA at the -2 position

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.181R free:0.217

NDB ID:

6M7T

PDB ID:

6M7T 

Release:

2018-09-12

Title:

Human DNA polymerase eta in a non-productive ternary complex with Ca2+ and dTTP oppositing cdA

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.22R free:0.261

NDB ID:

6M7U

PDB ID:

6M7U 

Release:

2018-09-12

Title:

Human DNA polymerase eta in a non-productive ternary complex with Mg2+ and dTMPNPP oppositing cdA

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.254R free:0.284

NDB ID:

6M7V

PDB ID:

6M7V 

Release:

2018-09-12

Title:

Human DNA polymerase eta extension complex with cdA at the -1 position

Classification:

TRANSFERASE/DNA

Authors:

Weng, P., Gao, Y., Gregory, M.T., Wang, P., Wang, Y., Yang, W.

Citation:

Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase eta at atomic resolution
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.062Å R work:0.236R free:0.267

NDB ID:

5YUT

PDB ID:

5YUT 

Release:

2018-09-05

Title:

DNA polymerase IV - DNA ternary complex 3

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.187R free:0.237

NDB ID:

5YV1

PDB ID:

5YV1 

Release:

2018-09-05

Title:

DNA polymerase IV - DNA ternary complex 13

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.196R free:0.251

NDB ID:

5YV2

PDB ID:

5YV2 

Release:

2018-09-05

Title:

DNA polymerase IV - DNA ternary complex 14

Classification:

DNA BINDING PROTEIN

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.203R free:0.244

NDB ID:

5YYD

PDB ID:

5YYD 

Release:

2018-09-05

Title:

DNA polymerase IV - ternary complex 15

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.195R free:0.237

NDB ID:

5YYE

PDB ID:

5YYE 

Release:

2018-09-05

Title:

DNA polymerase IV - ternary complex 16

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.325Å R work:0.2R free:0.255

NDB ID:

6D0M

PDB ID:

6D0M 

Release:

2018-09-05

Title:

Polymerase Eta post-insertion binary complex with cytarabine (AraC)

Classification:

TRANSFERASE/DNA

Authors:

Rechkoblit, O., Choudhury, J.R., Buku, A., Prakash, L., Prakash, S., Aggarwal, A.K.

Citation:

Structural basis for polymerase eta-promoted resistance to the anticancer nucleoside analog cytarabine.
Sci Rep 8 pp.12702 - 12702 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.832Å R work:0.16R free:0.196

NDB ID:

6D0Z

PDB ID:

6D0Z 

Release:

2018-09-05

Title:

Polymerase Eta cytarabine (AraC) extension ternary complex

Classification:

TRANSFERASE

Authors:

Rechkoblit, O., Choudhury, J.R., Buku, A., Prakash, L., Prakash, S., Aggarwal, A.K.

Citation:

Structural basis for polymerase eta-promoted resistance to the anticancer nucleoside analog cytarabine.
Sci Rep 8 pp.12702 - 12702 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.168R free:0.195

NDB ID:

6DCF

PDB ID:

6DCF 

Release:

2018-09-05

Title:

Crystal structure of a Mycobacterium smegmatis transcription initiation complex with Rifampicin-resistant RNA polymerase and bound to kanglemycin A

Classification:

transcription/dna/antibiotic

Authors:

Lilic, M., Darst, S.A., Campbell, E.A.

Citation:

Crystal structure of a Mycobacterium smegmatis transcription initiation complex with Rifampicin-resistant RNA polymerase and bound to kanglemycin A
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.45Å R work:0.252R free:0.289

NDB ID:

6DFY

PDB ID:

6DFY 

Release:

2018-09-05

Title:

Remodeled crystal structure of DNA-bound DUX4-HD2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Aihara, H., Shi, K., Lee, J.K., Bosnakovski, D., Kyba, M.

Citation:

Comment on structural basis of DUX4/IGH-driven transactivation.
Leukemia 32 pp.2090 - 2092 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.623Å R work:0.245R free:0.279

NDB ID:

6DGD

PDB ID:

6DGD 

Release:

2018-09-05

Title:

PriA helicase bound to dsDNA of a DNA replication fork

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Windgassen, T.A., Leroux, M., Satyshur, K.A., Sandler, S.J., Keck, J.L.

Citation:

Structure-specific DNA replication-fork recognition directs helicase and replication restart activities of the PriA helicase.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.823Å R work:0.247R free:0.289

NDB ID:

5OPH

PDB ID:

5OPH 

Release:

2018-08-29

Title:

G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD

Classification:

DNA

Authors:

Brcic, J., Plavec, J.

Citation:

G-quadruplex structure of DNA oligonucleotide with GGGGCC repeats, linked to ALS and FTD
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5YUR

PDB ID:

5YUR 

Release:

2018-08-29

Title:

DNA polymerase IV - DNA ternary complex 1

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.035Å R work:0.203R free:0.251

NDB ID:

5ZD4

PDB ID:

5ZD4 

Release:

2018-08-29

Title:

Crystal structure of MBP-fused BIL1/BZR1 in complex with double-stranded DNA

Classification:

TRANSCRIPTION

Authors:

Nosaki, S., Miyakawa, T., Xu, Y., Nakamura, A., Hirabayashi, K., Asami, T., Nakano, T., Masaru, T.

Citation:

Structural basis for brassinosteroid response by BIL1/BZR1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.17Å R work:0.216R free:0.244

NDB ID:

5ZJQ

PDB ID:

5ZJQ 

Release:

2018-08-29

Title:

Structure of AbdB/Exd complex bound to a 'Red14' DNA sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Zeiske, T., Baburajendran, N., Kaczynska, A., Brasch, J., Palmer, A.G., Shapiro, L., Honig, B., Mann, R.S.

Citation:

Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites.
Cell Rep 24 pp.2221 - 2230 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.443Å R work:0.222R free:0.252

NDB ID:

5ZJR

PDB ID:

5ZJR 

Release:

2018-08-29

Title:

Structure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Zeiske, T., Baburajendran, N., Kaczynska, A., Brasch, J., Palmer, A.G., Shapiro, L., Honig, B., Mann, R.S.

Citation:

Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites.
Cell Rep 24 pp.2221 - 2230 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.268R free:0.287

NDB ID:

5ZJS

PDB ID:

5ZJS 

Release:

2018-08-29

Title:

Structure of AbdB/Exd complex bound to a 'Blue14' DNA sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Zeiske, T., Baburajendran, N., Kaczynska, A., Brasch, J., Palmer, A.G., Shapiro, L., Honig, B., Mann, R.S.

Citation:

Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites.
Cell Rep 24 pp.2221 - 2230 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.896Å R work:0.253R free:0.281

NDB ID:

5ZJT

PDB ID:

5ZJT 

Release:

2018-08-29

Title:

Structure of AbdB/Exd complex bound to a 'Black14' DNA sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Zeiske, T., Baburajendran, N., Kaczynska, A., Brasch, J., Palmer, A.G., Shapiro, L., Honig, B., Mann, R.S.

Citation:

Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites.
Cell Rep 24 pp.2221 - 2230 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.232R free:0.275

NDB ID:

5ZU1

PDB ID:

5ZU1 

Release:

2018-08-29

Title:

Crystal Structure of BZ junction in diverse sequence

Classification:

HYDROLASE/DNA

Authors:

Kim, D., Hur, J., Han, J.H., Ha, S.C., Shin, D., Lee, S., Park, S., Sugiyama, H., Kim, K.K.

Citation:

Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.009Å R work:0.233R free:0.279

NDB ID:

5ZUO

PDB ID:

5ZUO 

Release:

2018-08-29

Title:

Crystal Structure of BZ junction in diverse sequence

Classification:

HYDROLASE/DNA

Authors:

Kim, D., Hur, J., Han, J.H., Ha, S.C., Shin, D., Lee, S., Park, S., Sugiyama, H., Kim, K.K.

Citation:

Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.902Å R work:0.255R free:0.301

NDB ID:

5ZUP

PDB ID:

5ZUP 

Release:

2018-08-29

Title:

Crystal Structure of BZ junction in diverse sequence

Classification:

HYDROLASE/DNA

Authors:

Kim, D., Hur, J., Han, J.H., Ha, S.C., Shin, D., Lee, S., Park, S., Sugiyama, H., Kim, K.K.

Citation:

Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.257R free:0.282

NDB ID:

6A5N

PDB ID:

6A5N 

Release:

2018-08-29

Title:

Crystal structure of Arabidopsis thaliana SUVH6 in complex with methylated DNA

Classification:

GENE REGULATION/DNA

Authors:

Li, X., Harris, C.J., Zhong, Z., Chen, W., Liu, R., Jia, B., Wang, Z., Li, S., Jacobsen, S.E., Du, J.

Citation:

Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.23R free:0.279

NDB ID:

6CVO

PDB ID:

6CVO 

Release:

2018-08-29

Title:

Human Aprataxin (Aptx) bound to nicked RNA-DNA, AMP and Zn product complex

Classification:

HYDROLASE/DNA/RNA

Authors:

Tumbale, P., Schellenberg, M.J., Mueller, G.A., Fairweather, E., Watson, M., Little, J.N., Krahn, J., Waddell, I., London, R.E., Williams, R.S.

Citation:

Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease.
EMBO J. 37 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.183R free:0.222

NDB ID:

6DKL

PDB ID:

6DKL 

Release:

2018-08-29

Title:

Crystal Structure of a Rationally Designed Six-Fold Symmetric DNA Scaffold

Classification:

DNA

Authors:

Zhang, F., Simmons, C.R., Gates, J., Liu, Y., Yan, H.

Citation:

Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.034Å R work:0.227R free:0.233

NDB ID:

6H8Q

PDB ID:

6H8Q 

Release:

2018-08-29

Title:

Structural basis for Scc3-dependent cohesin recruitment to chromatin

Classification:

CELL CYCLE

Authors:

Li, Y., Muir, K., Bowler, M.W., Metz, J., Haering, C.H., Panne, D.

Citation:

Structural basis for Scc3-dependent cohesin recruitment to chromatin.
Elife 7 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.631Å R work:0.283R free:0.318

NDB ID:

5ZCW

PDB ID:

5ZCW 

Release:

2018-08-22

Title:

Structure of the Methanosarcina mazei class II CPD-photolyase in complex with intact, phosphodiester linked, CPD-lesion

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Maestre-Reyna, M., Yamamoto, J., Huang, W.C., Tsai, M.D., Essen, L.-O., Bessho, Y.

Citation:

Twist and turn: a revised structural view on the unpaired bubble of class II CPD photolyase in complex with damaged DNA
Iucrj 5 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.213R free:0.257

NDB ID:

6BRX

PDB ID:

6BRX 

Release:

2018-08-22

Title:

Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion

Classification:

REPLICATION

Authors:

Jha, V., Ling, H.

Citation:

Structural Basis for Human DNA Polymerase Kappa to Bypass Cisplatin Intrastrand Cross-Link (Pt-GG) Lesion as an Efficient and Accurate Extender.
J. Mol. Biol. 430 pp.1577 - 1589 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.213R free:0.268

NDB ID:

6BS1

PDB ID:

6BS1 

Release:

2018-08-22

Title:

Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion

Classification:

REPLICATION

Authors:

Jha, V., Ling, H.

Citation:

Structural Basis for Human DNA Polymerase Kappa to Bypass Cisplatin Intrastrand Cross-Link (Pt-GG) Lesion as an Efficient and Accurate Extender.
J. Mol. Biol. 430 pp.1577 - 1589 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.244R free:0.298