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As of 4-Dec-2019 number of released structures: 10490
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7102  Download results as an excel file       Gallery view

NDB ID:

6JIP

PDB ID:

6JIP 

Release:

2019-11-27

Title:

Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA dT6

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Li, S., Lu, G., Fang, X., Ramelot, T.A., Kennedy, M.A., Zhou, X., Gong, P., Zhang, X., Liu, M., Zhu, J., Yang, Y.

Citation:

Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.659Å R work:0.193R free:0.214

NDB ID:

6JIQ

PDB ID:

6JIQ 

Release:

2019-11-27

Title:

Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA dT6

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Li, S., Lu, G., Fang, X., Ramelot, T.A., Kennedy, M.A., Zhou, X., Gong, P., Zhang, X., Liu, M., Zhu, J., Yang, Y.

Citation:

Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.67Å R work:0.199R free:0.212

NDB ID:

6L6L

PDB ID:

6L6L 

Release:

2019-11-20

Title:

Structural basis of NR4A2 homodimers binding to selective Nur-responsive elements

Classification:

DNA BINDING PROTEIN

Authors:

Jiang, L., Dai, S., Li, J., Liang, X., Qu, L., Chen, X., Guo, M., Chen, Z., Chen, L., Wei, H., Chen, Y.

Citation:

Structural basis of binding of homodimers of the nuclear receptor NR4A2 to selective Nur-responsive DNA elements.
J.Biol.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.781Å R work:0.216R free:0.252

NDB ID:

6L6Q

PDB ID:

6L6Q 

Release:

2019-11-20

Title:

Structural basis of NR4A2 homodimers binding to selective Nur-responsive elements

Classification:

DNA BINDING PROTEIN

Authors:

Jiang, L., Dai, S., Li, J., Liang, X., Qu, L., Chen, X., Guo, M., Chen, Z., Chen, L., Wei, H., Chen, Y.

Citation:

Structural basis of binding of homodimers of the nuclear receptor NR4A2 to selective Nur-responsive DNA elements.
J.Biol.Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.601Å R work:0.248R free:0.289

NDB ID:

6MRJ

PDB ID:

6MRJ 

Release:

2019-11-20

Title:

Crystal structure of H.pylori NikR in complex with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pozharski, E., de Serrano, V.

Citation:

Crystal structure of H.pylori NikR in complex with DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.207R free:0.241

NDB ID:

6PZ3

PDB ID:

6PZ3 

Release:

2019-11-20

Title:

Polymerase Eta-catalyzed insertion of correct G opposite template cytarabine (AraC) residue

Classification:

TRANSFERASE

Authors:

Rechkoblit, O., Johnson, R.E., Buku, A., Prakash, L., Prakash, S., Aggarwal, A.K.

Citation:

Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep 9 pp.16400 - 16400 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.395Å R work:0.173R free:0.215

NDB ID:

6Q02

PDB ID:

6Q02 

Release:

2019-11-20

Title:

Polymerase Eta-catalyzed insertion of the mismatched A opposite template cytarabine (AraC) residue

Classification:

TRANSFERASE/DNA

Authors:

Rechkoblit, O., Johnson, R.E., Buku, A., Prakash, L., Prakash, S., Aggarwal, A.K.

Citation:

Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase eta.
Sci Rep 9 pp.16400 - 16400 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.191R free:0.239

NDB ID:

6TBZ

PDB ID:

6TBZ 

Release:

2019-11-20

Title:

Crystal structure of the MH1 domain of Smad5-Smad3 chimera construct bound to the GGCGC site

Classification:

TRANSCRIPTION

Authors:

Ruiz, L., Kaczmarska, Z., Gomes, T., Aragon, E., Torner, C., Freier, R., Baginski, B., Martin-Malpartida, P., Martin Garrido, N., Marquez, J., Cordeiro, T., Pluta, R., Macias, M.J.

Citation:

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.782Å R work:0.191R free:0.226

NDB ID:

6TCE

PDB ID:

6TCE 

Release:

2019-11-20

Title:

Crystal structure of the GGCT site-bound MH1 domain of Smad5 containing a GGGS insertion in the Loop1

Classification:

TRANSCRIPTION

Authors:

Ruiz, L., Kaczmarska, Z., Gomes, T., Aragon, E., Torner, C., Freier, R., Baginski, B., Martin-Malpartida, P., Martin Garrido, N., Marquez, J., Cordeiro, T., Pluta, R., Macias, M.J.

Citation:

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.92Å R work:0.208R free:0.253

NDB ID:

6U15

PDB ID:

6U15 

Release:

2019-11-20

Title:

Human thymine DNA glycosylase N140A mutant bound to DNA with 2'-F-5-carboxyl-dC substrate analog

Classification:

HYDROLASE

Authors:

Pidugu, L.S., Dai, Q., Malik, S.S., Pozharski, E., Drohat, A.C.

Citation:

Excision of 5-carboxylcytosine by Thymine DNA Glycosylase.
J.Am.Chem.Soc. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.199R free:0.212

NDB ID:

6U16

PDB ID:

6U16 

Release:

2019-11-20

Title:

Human thymine DNA glycosylase N140A mutant bound to DNA with 5-carboxyl-dC substrate

Classification:

HYDROLASE

Authors:

Pidugu, L.S., Dai, Q., Malik, S.S., Pozharski, E., Drohat, A.C.

Citation:

Excision of 5-carboxylcytosine by Thymine DNA Glycosylase.
J.Am.Chem.Soc. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.186R free:0.209

NDB ID:

6U17

PDB ID:

6U17 

Release:

2019-11-20

Title:

Human thymine DNA glycosylase bound to DNA with 2'-F-5-carboxyl-dC substrate analog

Classification:

HYDROLASE

Authors:

Pidugu, L.S., Dai, Q., Malik, S.S., Pozharski, E., Drohat, A.C.

Citation:

Excision of 5-carboxylcytosine by Thymine DNA Glycosylase.
J.Am.Chem.Soc. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.188R free:0.224

NDB ID:

6KKS

PDB ID:

6KKS 

Release:

2019-11-13

Title:

Structural insights into target DNA recognition by R2R3-type MYB transcription factor

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Wang, B., Luo, Q., Li, Y., Yin, L., Zhou, N., Li, X., Gan, J., Dong, A.

Citation:

Structural insights into target DNA recognition by R2R3-MYB transcription factors.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.213R free:0.245

NDB ID:

6JDV

PDB ID:

6JDV 

Release:

2019-11-06

Title:

Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state

Classification:

HYDROLASE/RNA/DNA

Authors:

Sun, W., Yang, J., Cheng, Z., Amrani, N., Liu, C., Wang, K., Ibraheim, R., Edraki, A., Huang, X., Wang, M., Wang, J., Liu, L., Sheng, G., Yang, Y., Lou, J., Sontheimer, E.J., Wang, Y.

Citation:

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.212R free:0.231

NDB ID:

6JE3

PDB ID:

6JE3 

Release:

2019-11-06

Title:

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang

Classification:

HYDROLASE/RNA/DNA

Authors:

Sun, W., Yang, J., Cheng, Z., Amrani, N., Liu, C., Wang, K., Ibraheim, R., Edraki, A., Huang, X., Wang, M., Wang, J., Liu, L., Sheng, G., Yang, Y., Lou, J., Sontheimer, E.J., Wang, Y.

Citation:

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.931Å R work:0.226R free:0.256

NDB ID:

6JE4

PDB ID:

6JE4 

Release:

2019-11-06

Title:

Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers

Classification:

HYDROLASE/HYDROLASE INHIBITOR/DNA/RNA

Authors:

Sun, W., Yang, J., Cheng, Z., Amrani, N., Liu, C., Wang, K., Ibraheim, R., Edraki, A., Huang, X., Wang, M., Wang, J., Liu, L., Sheng, G., Yang, Y., Lou, J., Sontheimer, E.J., Wang, Y.

Citation:

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.069Å R work:0.21R free:0.24

NDB ID:

6JFU

PDB ID:

6JFU 

Release:

2019-11-06

Title:

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM)

Classification:

HYDROLASE/RNA/DNA

Authors:

Sun, W., Yang, J., Cheng, Z., Amrani, N., Liu, C., Wang, K., Ibraheim, R., Edraki, A., Huang, X., Wang, M., Wang, J., Liu, L., Sheng, G., Yang, Y., Lou, J., Sontheimer, E.J., Wang, Y.

Citation:

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.253R free:0.27

NDB ID:

6KC7

PDB ID:

6KC7 

Release:

2019-11-06

Title:

Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state

Classification:

HYDROLASE/RNA/DNA

Authors:

Sun, W., Yang, J., Cheng, Z., Amrani, N., Liu, C., Wang, K., Ibraheim, R., Edraki, A., Huang, X., Wang, M., Wang, J., Liu, L., Sheng, G., Yang, Y., Lou, J., Sontheimer, E.J., Wang, Y.

Citation:

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.252R free:0.274

NDB ID:

6KC8

PDB ID:

6KC8 

Release:

2019-11-06

Title:

Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state

Classification:

HYDROLASE/RNA/DNA

Authors:

Sun, W., Yang, J., Cheng, Z., Amrani, N., Liu, C., Wang, K., Ibraheim, R., Edraki, A., Huang, X., Wang, M., Wang, J., Liu, L., Sheng, G., Yang, Y., Lou, J., Sontheimer, E.J., Wang, Y.

Citation:

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.202R free:0.256

NDB ID:

6RS3

PDB ID:

6RS3 

Release:

2019-11-06

Title:

2'-F-riboguanosine modified G-quadruplex with V-loop

Classification:

DNA

Authors:

Haase, L., Dickerhoff, J., Weisz, K.

Citation:

Sugar Puckering Drives G-Quadruplex Refolding: Implications for V-Shaped Loops.
Chemistry pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6S7D

PDB ID:

6S7D 

Release:

2019-11-06

Title:

Self-complementary duplex DNA containing an internucleoside phosphoroselenolate

Classification:

DNA

Authors:

Conlon, P.F., Eguaogie, O., Wilson, J.J., Sweet, J.S.T., Steinhoegl, J., Hancox, O., Englert, K., Law, C.J., Allman, S.A., Tucker, J.H.R., Hall, J.P., Vyle, J.S.

Citation:

Solid-phase synthesis and structural characterisation of phosphoroselenolate-modified DNA: a backbone analogue which does not impose conformational bias and facilitates SAD X-ray crystallography
Chem Sci pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.184R free:0.236

NDB ID:

6HWG

PDB ID:

6HWG 

Release:

2019-10-30

Title:

[Ru(phen)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2

Classification:

DNA

Authors:

McQuaid, K.T., Hall, J.P., Cardin, C.J.

Citation:

[Ru(phen)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.74Å R work:0.193R free:0.205

NDB ID:

6IQ4

PDB ID:

6IQ4 

Release:

2019-10-30

Title:

Nucleosome core particle cross-linked with a hetero-binuclear molecule possessing RAPTA and gold(I) 4-(diphenylphosphino)benzoic acid groups.

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Batchelor, L.K., De Falco, L., von Erlach, T., Sharma, D., Adhireksan, Z., Roethlisberger, U., Davey, C.A., Dyson, P.J.

Citation:

Crosslinking Allosteric Sites on the Nucleosome.
Angew.Chem.Int.Ed.Engl. 58 pp.15660 - 15664 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.232R free:0.257

NDB ID:

6IYQ

PDB ID:

6IYQ 

Release:

2019-10-30

Title:

Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides

Classification:

DNA

Authors:

Ono, A., Atsugi, T., Goto, M., Saneyoshi, H., Tomori, T., Seio, K., Dairaku, T., Kondo, J.

Citation:

Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides: reversible formation and cleavage catalyzed by Cu(II) ion and glutathione
Rsc Adv pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.01Å R work:0.246R free:0.281

NDB ID:

6JJ0

PDB ID:

6JJ0 

Release:

2019-10-30

Title:

NMR structure of the 1:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex

Classification:

DNA

Authors:

Liu, W., Lin, C., Wu, G., Chang, T.C., Yang, D.

Citation:

Solution structures of the c-MYC Promoter G-quadruplex bound to a carbazole derivative: Insights into small molecule conformational switch for optimal G4-binding
Nucleic Acids Res. pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6NJQ

PDB ID:

6NJQ 

Release:

2019-10-30

Title:

Structure of TBP-Hoogsteen containing DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Schumacher, M.A., Stelling, A.

Citation:

Structure of TBP-Hoogsteen containing DNA complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.23R free:0.277

NDB ID:

6T22

PDB ID:

6T22 

Release:

2019-10-30

Title:

N-terminal domain of EcoKMcrA restriction endonuclease (NEco) in complex with T5hmCGA target sequence

Classification:

HYDROLASE

Authors:

Slyvka, A., Zagorskaite, E., Czapinska, H., Sasnauskas, G., Bochtler, M.

Citation:

Crystal structure of the EcoKMcrA N-terminal domain (NEco): recognition of modified cytosine bases without flipping.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.21Å R work:0.157R free:0.203

NDB ID:

6T51

PDB ID:

6T51 

Release:

2019-10-30

Title:

NMR structure of KRAS22RT G-quadruplex forming within KRAS promoter region at physological temperature

Classification:

DNA

Authors:

Marquevielle, J., Kumar, M.V.V., Mergny, J.L., Salgado, G.F.

Citation:

1H,13C, and15N chemical shift assignments of a G-quadruplex forming sequence within the KRAS proto-oncogene promoter region.
Biomol.Nmr Assign. 12 pp.123 - 127 2018

Experiment:

SOLUTION NMR

NDB ID:

6HT5

PDB ID:

6HT5 

Release:

2019-10-23

Title:

Oct4/Sox2:UTF1 structure

Classification:

TRANSCRIPTION

Authors:

Vahokoski, J., Pogenberg, V., Wilmanns, M.

Citation:

Oct4/Sox2:UTF1 structure
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.451Å R work:0.201R free:0.248

NDB ID:

6IS8

PDB ID:

6IS8 

Release:

2019-10-23

Title:

Crystal structure of ZmMoc1 D115N mutant in complex with Holliday junction

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lin, H., Zhang, D., Zuo, K., Yuan, C., Li, J., Huang, M., Lin, Z.

Citation:

Structural basis of sequence-specific Holliday junction cleavage by MOC1.
Nat.Chem.Biol. 15 pp.1241 - 1248 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.68Å R work:0.157R free:0.203

NDB ID:

6JRF

PDB ID:

6JRF 

Release:

2019-10-23

Title:

Crystal structure of ZmMoc1-Holliday junction Complex in the presence of Calcium

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lin, H., Zhang, D., Zuo, K., Yuan, C., Li, J., Huang, M., Lin, Z.

Citation:

Structural basis of sequence-specific Holliday junction cleavage by MOC1.
Nat.Chem.Biol. 15 pp.1241 - 1248 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.047Å R work:0.208R free:0.264

NDB ID:

6JRG

PDB ID:

6JRG 

Release:

2019-10-23

Title:

Crystal structure of ZmMoc1 H253A mutant in complex with Holliday junction

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lin, H., Zhang, D., Zuo, K., Yuan, C., Li, J., Huang, M., Lin, Z.

Citation:

Structural basis of sequence-specific Holliday junction cleavage by MOC1.
Nat.Chem.Biol. 15 pp.1241 - 1248 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.005Å R work:0.185R free:0.231

NDB ID:

6MQ8

PDB ID:

6MQ8 

Release:

2019-10-23

Title:

Binary structure of DNA polymerase eta in complex with templating hypoxanthine

Classification:

TRANSFERASE/DNA

Authors:

Hawkins, M.A., Hunmin, J., Lee, S.

Citation:

Structural Analysis of Translesion Synthesis Across Hypoxanthine Lesion Using Human DNA Polymerase Eta
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.969Å R work:0.17R free:0.207

NDB ID:

6O2L

PDB ID:

6O2L 

Release:

2019-10-23

Title:

NMR structure of the 2:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex

Classification:

DNA

Authors:

Liu, W., Lin, C., Wu, G., Chang, T.C., Yang, D.

Citation:

Solution structures of the c-MYC Promoter G-quadruplex bound to a carbazole derivative: Insights into small molecule conformational switch for optimal G4-binding
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6O9E

PDB ID:

6O9E 

Release:

2019-10-23

Title:

Structure of HIV-1 Reverse Transcriptase in complex with DNA and INDOPY-1

Classification:

TRANSFERASE/DNA

Authors:

Ruiz, F.X., Hoang, A., Das, K., Arnold, E.

Citation:

Structural Basis of HIV-1 Inhibition by Nucleotide-Competing Reverse Transcriptase Inhibitor INDOPY-1.
J.Med.Chem. 62 pp.9996 - 10002 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.202R free:0.241

NDB ID:

6PBD

PDB ID:

6PBD 

Release:

2019-10-23

Title:

DNA N6-Adenine Methyltransferase CcrM In Complex with Double-Stranded DNA Oligonucleotide Containing Its Recognition Sequence GAATC

Classification:

TRANSFERASE/DNA

Authors:

Horton, J.R., Woodcock, C.B., Opot, S.B., Reich, N.O., Zhang, X., Cheng, X.

Citation:

The cell cycle-regulated DNA adenine methyltransferase CcrM opens a bubble at its DNA recognition site.
Nat Commun 10 pp.4600 - 4600 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.343Å R work:0.172R free:0.208

NDB ID:

6R64

PDB ID:

6R64 

Release:

2019-10-23

Title:

N-terminal domain of modification dependent EcoKMcrA restriction endonuclease (NEco) in complex with C5mCGG target sequence

Classification:

HYDROLASE

Authors:

Slyvka, A., Zagorskaite, E., Czapinska, H., Sasnauskas, G., Bochtler, M.

Citation:

Crystal structure of the EcoKMcrA N-terminal domain (NEco): recognition of modified cytosine bases without flipping.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.64Å R work:0.19R free:0.229

NDB ID:

6T21

PDB ID:

6T21 

Release:

2019-10-23

Title:

N-terminal domain of EcoKMcrA restriction endonuclease (NEco) in complex with T5mCGA target sequence

Classification:

HYDROLASE

Authors:

Slyvka, A., Zagorskaite, E., Czapinska, H., Sasnauskas, G., Bochtler, M.

Citation:

Crystal structure of the EcoKMcrA N-terminal domain (NEco): recognition of modified cytosine bases without flipping.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.07Å R work:0.158R free:0.201

NDB ID:

6IUE

PDB ID:

6IUE 

Release:

2019-10-16

Title:

DNA helical wire containing Hg(II)

Classification:

DNA

Authors:

Ono, A., Kanazawa, H., Ito, H., Goto, M., Nakamura, K., Saneyoshi, H., Kondo, J.

Citation:

A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs.
Angew.Chem.Int.Ed.Engl. 58 pp.16835 - 16838 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.901Å R work:0.293R free:0.346

NDB ID:

6MP3

PDB ID:

6MP3 

Release:

2019-10-16

Title:

Binary structure of DNA polymerase eta in complex with templating hypoxanthine

Classification:

TRANSFERASE/DNA

Authors:

Hawkins, M.A., Hunmin, J., Lee, S.

Citation:

Structural Analysis of Translesion Synthesis Across Hypoxanthine Lesion Using Human DNA Polymerase Eta
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.907Å R work:0.167R free:0.209

NDB ID:

6Q6R

PDB ID:

6Q6R 

Release:

2019-10-16

Title:

Recognition of different base tetrads by RHAU: X-ray crystal structure of G4 recognition motif bound to the 3-end tetrad of a DNA G-quadruplex

Classification:

DNA BINDING PROTEIN

Authors:

Heddi, B., Cheong, V.V., Schmitt, E., Mechulam, Y., Phan, A.T.

Citation:

Recognition of different base tetrads by RHAU (DHX36): X-ray crystal structure of the G4 recognition motif bound to the 3'-end tetrad of a DNA G-quadruplex.
J.Struct.Biol. pp.107399 - 107399 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.185R free:0.244

NDB ID:

6TZQ

PDB ID:

6TZQ 

Release:

2019-10-16

Title:

A DNA G-quadruplex/i-motif hybrid

Classification:

DNA

Authors:

Chu, B., Zhang, D., Paukstelis, P.J.

Citation:

A DNA G-quadruplex/i-motif hybrid.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.29Å R free:0.255

NDB ID:

6TZR

PDB ID:

6TZR 

Release:

2019-10-16

Title:

A DNA G-quadruplex/i-motif hybrid

Classification:

DNA

Authors:

Chu, B., Zhang, D., Paukstelis, P.J.

Citation:

A DNA G-quadruplex/i-motif hybrid.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.212R free:0.253

NDB ID:

6TZS

PDB ID:

6TZS 

Release:

2019-10-16

Title:

A DNA i-motif/duplex hybrid

Classification:

DNA

Authors:

Chu, B., Zhang, D., Paukstelis, P.J.

Citation:

A DNA G-quadruplex/i-motif hybrid.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.266R free:0.316

NDB ID:

6FY6

PDB ID:

6FY6 

Release:

2019-10-09

Title:

Concerted dynamics of metallo-base pairs in an A/B-form helical transition (major species)

Classification:

DNA

Authors:

Schmidt, O.P., Jurt, S., Johannsen, S., Karimi, A., Sigel, R.K.O., Luedtke, N.W.

Citation:

Concerted dynamics of metallo-base pairs in an A/B-form helical transition.
Nat Commun 10 pp.4818 - 4818 2019

Experiment:

SOLUTION NMR

NDB ID:

6FY7

PDB ID:

6FY7 

Release:

2019-10-09

Title:

Concerted dynamics of metallo-base pairs in an A/B-form helical transition (minor species)

Classification:

DNA

Authors:

Schmidt, O.P., Jurt, S., Johannsen, S., Karimi, A., Sigel, R.K.O., Luedtke, N.W.

Citation:

Concerted dynamics of metallo-base pairs in an A/B-form helical transition.
Nat Commun 10 pp.4818 - 4818 2019

Experiment:

SOLUTION NMR

NDB ID:

6RCN

PDB ID:

6RCN 

Release:

2019-10-09

Title:

Crystal structure of REXO2-D199A-dAdA

Classification:

HYDROLASE

Authors:

Nicholls, T.J., Spahr, H., Jiang, S., Siira, S.J., Koolmeister, C., Sharma, S., Kauppila, J.H.K., Jiang, M., Kaever, V., Rackham, O., Chabes, A., Falkenberg, M., Filipovska, A., Larsson, N.G., Gustafsson, C.M.

Citation:

Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.
Mol.Cell pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.211R free:0.246

NDB ID:

6RLS

PDB ID:

6RLS 

Release:

2019-10-09

Title:

Concerted dynamics of metallo-base pairs in an A/B-form helical transition (apo species)

Classification:

DNA

Authors:

Schmidt, O.P., Jurt, S., Johannsen, S., Karimi, A., Sigel, R.K.O., Luedtke, N.W.

Citation:

Concerted dynamics of metallo-base pairs in an A/B-form helical transition.
Nat Commun 10 pp.4818 - 4818 2019

Experiment:

SOLUTION NMR

NDB ID:

6FZS

PDB ID:

6FZS 

Release:

2019-10-02

Title:

Crystal structure of Smad5-MH1 bound to the GGCGC site.

Classification:

TRANSCRIPTION

Authors:

Ruiz, L., Kaczmarska, Z., Aragon, E., Cordero, J., Martin Malpartida, P., Freier, R., Marquez, J.A., Macias, M.J.

Citation:

Recognition of the 5GC DNA motif is conserved in BMP and TGF-beta activated Smad proteins
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.31Å R work:0.193R free:0.24

NDB ID:

6FZT

PDB ID:

6FZT 

Release:

2019-10-02

Title:

Crystal structure of Smad8_9-MH1 bound to the GGCGC site.

Classification:

TRANSCRIPTION

Authors:

Ruiz, L., Kaczmarska, Z., Aragon, E., Cordero, J., Martin Malpartida, P., Freier, R., Marquez, J.A., Macias, M.J.

Citation:

Recognition of the 5GC DNA motif is conserved in BMP and TGF-beta activated Smad proteins
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.46Å R work:0.193R free:0.237