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As of 10-Feb-2016 number of released structures: 7984
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5380  Download results as an excel file       Gallery view

NDB ID:

4XA5

PDB ID:

4XA5 

Release:

2016-02-10

Title:

Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming 8-oxo-dGTP

Classification:

TRANSFERASE/DNA

Authors:

Burak, M.J., Guja, K.E., Garcia-Diaz, M.

Citation:

Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.
Nucleic Acids Res. 43 pp.8089 - 8099 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.199R free:0.227

NDB ID:

4Y00

PDB ID:

4Y00 

Release:

2016-02-10

Title:

Crystal Structure of Human TDP-43 RRM1 Domain with D169G Mutation in Complex with an Unmodified Single-stranded DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chiang, C.H., Kuo, P.H., Doudeva, L.G., Grauffel, C., Lim, C.

Citation:

Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.265R free:0.294

NDB ID:

4Y0F

PDB ID:

4Y0F 

Release:

2016-02-10

Title:

Crystal Structure of Human TDP-43 RRM1 Domain in Complex with an Unmodified Single-stranded DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chiang, C.H., Kuo, P.H., Doudeva, L.G., Grauffel, C., Lim, C., Yuan, H.S.

Citation:

Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.648Å R work:0.24R free:0.288

NDB ID:

4Z5T

PDB ID:

4Z5T 

Release:

2016-02-10

Title:

The nucleosome containing human H3.5

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Urahama, T., Harada, A., Maehara, K., Horikoshi, N., Sato, K., Sato, Y., Shiraishi, K., Sugino, N., Osakabe, A., Tachiwana, H., Kagawa, W., Kimura, H., Ohkawa, Y., Kurumizaka, H.

Citation:

Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.
Epigenetics Chromatin 9 pp.2 - 2 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.227R free:0.269

NDB ID:

5EBI

PDB ID:

5EBI 

Release:

2016-02-10

Title:

Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning

Classification:

DNA/RNA CHIMERA

Authors:

Gilski, M., Drozdzal, P., Kierzek, R., Jaskolski, M.

Citation:

Atomic resolution structure of a chimeric DNA-RNA Z-type duplex in complex with Ba2+ ions: a case of complicated multi-domain twinning
Acta Crystallogr.,Sect.D 72 pp.211 - 223 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.09Å R work:0.115R free:0.168

NDB ID:

5HLF

PDB ID:

5HLF 

Release:

2016-02-10

Title:

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE In COMPLEX WITH A 38-MER HAIRPIN TEMPLATE-PRIMER DNA APTAMER AND AN ALPHA-CARBOXYPHOSPHONATE INHIBITOR

Classification:

TRANSFERASE/INHIBITOR/DNA

Authors:

Mullins, N.D., Maguire, N.M., Ford, A., Das, K., Arnold, E., Balzarini, J., Maguire, A.R.

Citation:

Exploring the role of the alpha-carboxyphosphonate moiety in the HIV-RT activity of alpha-carboxy nucleoside phosphonates.
Org.Biomol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.207R free:0.257

NDB ID:

NA3385

PDB ID:

5FLV 

Release:

2016-02-10

Title:

Crystal structure of NKX2-5 and TBX5 bound to the Nppa promoter region

Classification:

TRANSCRIPTION

Authors:

Zurita, L.L., Stirnimann, C.U., Glatt, S., Thomas, S., Kaynak, B.L., Baudin, F., Samee, M.A.H., He, D., Small, E.M., Mileikovsky, M., Holloway, A.K., Nagy, A., Pollard, K.S., Mueller, C.W., Bruneau, B.G.

Citation:

Interdependent DNA Binding and Locus Tethering by Heterotypic Transcription Factors Coordinate Cardiogenesis
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.005Å R work:0.19R free:0.24

NDB ID:

4XSN

PDB ID:

4XSN 

Release:

2016-02-03

Title:

Copper(II) bound to the Z-DNA form of d(CGCGCG)

Classification:

DNA

Authors:

Rohner, M., Medina-Molner, A., Spingler, B.

Citation:

Copper(II) bound to the Z-DNA form of d(CGCGCG)
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.452Å R free:0.157

NDB ID:

4XUS

PDB ID:

4XUS 

Release:

2016-02-03

Title:

Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming dTTP

Classification:

TRANSFERASE/DNA

Authors:

Burak, M.J., Guja, K.E., Garcia-Diaz, M.

Citation:

Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.
Nucleic Acids Res. 43 pp.8089 - 8099 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.187R free:0.235

NDB ID:

5E5A

PDB ID:

5E5A 

Release:

2016-02-03

Title:

Crystal structure of the chromatin-tethering domain of Human cytomegalovirus IE1 protein bound to the nucleosome core particle

Classification:

PROTEIN BINDING/VIRAL PROTEIN/DNA

Authors:

Fang, Q., Chen, P., Wang, M., Fang, J., Yang, N., Li, G., Xu, R.M.

Citation:

Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.809Å R work:0.195R free:0.242

NDB ID:

5EXH

PDB ID:

5EXH 

Release:

2016-02-03

Title:

Crystal structure of mTET3-CXXC domain in complex with 5-carboxylcytosine DNA at 1.3 Angstroms resolution.

Classification:

OXIDOREDUCTASE/DNA

Authors:

Jin, S.G., Zhang, Z.M., Dunwell, T.L., Harter, M.R., Wu, X., Johnson, J., Li, Z., Liu, J., Szabo, P.E., Lu, Q., Xu, G.L., Song, J., Pfeifer, G.P.

Citation:

Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration.
Cell Rep 14 pp.493 - 505 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.3Å R work:0.167R free:0.187

NDB ID:

5F99

PDB ID:

5F99 

Release:

2016-02-03

Title:

X-ray Structure of the MMTV-A Nucleosome Core Particle

Classification:

DNA BINDING PROTEIN

Authors:

Frouws, T.D., Duda, S.C., Richmond, T.J.

Citation:

X-ray structure of the MMTV-A nucleosome core.
Proc.Natl.Acad.Sci.USA 113 pp.1214 - 1219 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.63Å R work:0.174R free:0.252

NDB ID:

NA3384

PDB ID:

5FTE 

Release:

2016-02-03

Title:

Crystal structure of Pif1 helicase from Bacteroides in complex with ADP-AlF3 and ssDNA

Classification:

HYDROLASE

Authors:

Chen, W.-F., Dai, Y.-X., Duan, X.-L., Liu, N.-N., Shi, W., Li, N., Li, M., Dou, S.-X., Dong, Y.-H., Rety, S., Xi, X.-G.

Citation:

Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.19Å R work:0.221R free:0.279

NDB ID:

4U6P

PDB ID:

4U6P 

Release:

2016-01-27

Title:

Structural mechanism of error-free bypass of major benzo[a]pyrene adduct by human polymerase kappa

Classification:

TRANSFERASE/DNA

Authors:

Jha, V.K., Bian, C., Xing, G., Ling, H.

Citation:

Structural mechanism of error-free bypass of major benzo[a]pyrene adduct by human polymerase kappa
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.593Å R work:0.2R free:0.238

NDB ID:

4U7C

PDB ID:

4U7C 

Release:

2016-01-27

Title:

Structure of DNA polymerase kappa in complex with benzopyrene adducted DNA

Classification:

TRANSFERASE/DNA

Authors:

Jha, V.K., Bian, C., Xing, G., Ling, H.

Citation:

Structural mechanism of error-free bypass of major benzo[a]pyrene adduct by human polymerase kappa
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.212R free:0.252

NDB ID:

4XQY

PDB ID:

4XQY 

Release:

2016-01-27

Title:

Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by L-lactate and succinate

Classification:

DNA

Authors:

Rohner, M., Medina-Molner, A., Spingler, B.

Citation:

Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by L-lactate and succinate
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.57Å R work:0.157R free:0.196

NDB ID:

4XQZ

PDB ID:

4XQZ 

Release:

2016-01-27

Title:

Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by chloride and MES

Classification:

DNA

Authors:

Rohner, M., Medina-Molner, A., Spingler, B.

Citation:

Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by chloride and MES
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.151Å R work:0.23R free:0.299

NDB ID:

4XUJ

PDB ID:

4XUJ 

Release:

2016-01-27

Title:

X-ray structure of NCP containing RuII-arene complex of thiomorpholine substituted 3-Hydroxy-2-pyridone ligands

Classification:

DNA-BINDING PROTEIN/DNA

Authors:

Hanif, M., Meier, S.M., Adhireksan, Z., Henke, H., Martic, S., Labib, M., Kandioller, W., Jakupec, M.A., Kraatz, H.B., Davey, C.A., Keppler, B.K., Hartinger, C.G.

Citation:

Contrasting Cytotoxicity and Reactivity of RuII-Arene Complexes of Morpholine vs Thiomorpholine Substituted 3-Hydroxy-2-pyridone Ligands
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.18Å R work:0.263R free:0.298

NDB ID:

5C53

PDB ID:

5C53 

Release:

2016-01-27

Title:

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Classification:

transferase/dna

Authors:

Sohl, C.D., Szymanski, M.R., Mislak, A.C., Shumate, C.K., Amiralaei, S., Schinazi, R.F., Anderson, K.S., Yin, Y.W.

Citation:

Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma.
Proc.Natl.Acad.Sci.USA 112 pp.8596 - 8601 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.567Å R work:0.299R free:0.338

NDB ID:

5F9R

PDB ID:

5F9R 

Release:

2016-01-27

Title:

Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage

Classification:

HYDROLASE/DNA/RNA

Authors:

Jiang, F., Taylor, D.W., Chen, J.S., Kornfeld, J.E., Zhou, K., Thompson, A.J., Nogales, E., Doudna, J.A.

Citation:

Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage
Science pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.236R free:0.298

NDB ID:

NA3347

PDB ID:

4RZN 

Release:

2016-01-27

Title:

Crystal structure of d(GTGGAATGGAAC)

Classification:

DNA

Authors:

Lo, Y.S., Kao, Y.F., Hou, M.H.

Citation:

Crystal structure of d(GTGGAATGGAAC)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.58Å R work:0.278R free:0.328

NDB ID:

5DWW

PDB ID:

5DWW 

Release:

2016-01-20

Title:

Structural Insights into the Quadruplex-Duplex 3' Interface formed from a Telomeric Repeat - TTLOOP

Classification:

DNA

Authors:

Russo Krauss, I., Ramaswamy, S., Neidle, S., Haider, S., Parkinson, G.N.

Citation:

Structural Insights into the Quadruplex-Duplex 3' Interface Formed from a Telomeric Repeat: A Potential Molecular Target.
J.Am.Chem.Soc. 138 pp.1226 - 1233 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.79Å R work:0.215R free:0.252

NDB ID:

5DWX

PDB ID:

5DWX 

Release:

2016-01-20

Title:

Structural Insights into the Quadruplex-Duplex 3' Interface formed from a Telomeric Repeat - TLOOP

Classification:

DNA

Authors:

Russo Krauss, I., Ramaswamy, S., Neidle, S., Haider, S., Parkinson, G.N.

Citation:

Structural Insights into the Quadruplex-Duplex 3' Interface Formed from a Telomeric Repeat: A Potential Molecular Target.
J.Am.Chem.Soc. 138 pp.1226 - 1233 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.71Å R work:0.284R free:0.327

NDB ID:

5CKI

PDB ID:

5CKI 

Release:

2016-01-13

Title:

Crystal structure of 9DB1* deoxyribozyme (Cobalt hexammine soaked crystals)

Classification:

DNA

Authors:

Ponce-Salvatierra, A., Wawrzyniak-Turek, K., Steuerwald, U., Hobartner, C., Pena, V.

Citation:

Crystal structure of a DNA catalyst.
Nature 529 pp.231 - 234 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.985Å R work:0.256R free:0.31

NDB ID:

5CKK

PDB ID:

5CKK 

Release:

2016-01-13

Title:

Crystal structure of 9DB1* deoxyribozyme

Classification:

LIGASE

Authors:

Ponce-Salvatierra, A., Wawrzyniak-Turek, K., Steuerwald, U., Hobartner, C., Pena, V.

Citation:

Crystal structure of a DNA catalyst.
Nature 529 pp.231 - 234 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.801Å R work:0.274R free:0.287

NDB ID:

5CMX

PDB ID:

5CMX 

Release:

2016-01-13

Title:

X-ray structure of the complex between human alpha thrombin and a duplex/quadruplex 31-mer DNA aptamer

Classification:

HYDROLASE

Authors:

Russo Krauss, I., Spiridonova, V., Pica, A., Napolitano, V., Sica, F.

Citation:

Different duplex/quadruplex junctions determine the properties of anti-thrombin aptamers with mixed folding.
Nucleic Acids Res. 44 pp.983 - 991 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.165R free:0.231

NDB ID:

5CO8

PDB ID:

5CO8 

Release:

2016-01-13

Title:

Crystal structure of the Holliday junction-resolving enzyme GEN1 (WT) in complex with product DNA and Mg2+ ion

Classification:

HYDROLASE

Authors:

Liu, Y., Freeman, A.D., Declais, A.C., Wilson, T.J., Gartner, A., Lilley, D.M.

Citation:

Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA.
Cell Rep 13 pp.2565 - 2575 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.238R free:0.254

NDB ID:

5DY0

PDB ID:

5DY0 

Release:

2016-01-13

Title:

Crystal of AmtR from Corynebacterium glutamicum in complex with DNA

Classification:

DNA BINDING PROTEIN

Authors:

Palanca, C., Rubio, V.

Citation:

Structure of AmtR, the global nitrogen regulator of Corynebacterium glutamicum, in free and DNA-bound forms.
Febs J. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.205R free:0.223

NDB ID:

5E5O

PDB ID:

5E5O 

Release:

2016-01-13

Title:

I-SmaMI bound to uncleaved DNA target in the presence of Calcium ions

Classification:

HYDROLASE/DNA

Authors:

Shen, B.W., Lambert, A., Walker, B.C., Stoddard, B.L., Kaiser, B.K.

Citation:

The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease.
J.Mol.Biol. 428 pp.206 - 220 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.36Å R work:0.187R free:0.273

NDB ID:

5E5S

PDB ID:

5E5S 

Release:

2016-01-13

Title:

I-SmaMI K103A mutant

Classification:

Hydrolase/DNA

Authors:

Shen, B.W., Lambert, A., Walker, B.C., Stoddard, B.L., Kaiser, B.K.

Citation:

The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease.
J.Mol.Biol. 428 pp.206 - 220 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.29Å R work:0.189R free:0.251

NDB ID:

5E63

PDB ID:

5E63 

Release:

2016-01-13

Title:

K262A mutant of I-SmaMI

Classification:

Hydrolase/DNA

Authors:

Shen, B.W., Lambert, A., Walker, B.C., Stoddard, B.L., Kaiser, B.K.

Citation:

The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease.
J.Mol.Biol. 428 pp.206 - 220 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.188R free:0.278

NDB ID:

5E67

PDB ID:

5E67 

Release:

2016-01-13

Title:

K103A/K262A double mutant of I-SmaMI

Classification:

Hydrolase/DNA

Authors:

Shen, B.W., Lambert, A., Walker, B.C., Stoddard, B.L., Kaiser, B.K.

Citation:

The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease.
J.Mol.Biol. 428 pp.206 - 220 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.179R free:0.254

NDB ID:

5EWE

PDB ID:

5EWE 

Release:

2016-01-13

Title:

Ternary complex of human DNA polymerase eta inserting rCTP opposite template G

Classification:

TRANSFERASE/DNA

Authors:

Su, Y., Egli, M., Guengerich, F.P.

Citation:

Mechanism of Ribonucleotide Incorporation by Human DNA Polymerase eta.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.66Å R work:0.171R free:0.207

NDB ID:

5EWF

PDB ID:

5EWF 

Release:

2016-01-13

Title:

Ternary complex of human DNA polymerase eta inserting rCTP opposite an 8-Oxodeoxyguanosine Lesion

Classification:

TRANSFERASE/DNA

Authors:

Su, Y., Egli, M., Guengerich, F.P.

Citation:

Mechanism of Ribonucleotide Incorporation by Human DNA Polymerase eta.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.782Å R work:0.179R free:0.215

NDB ID:

5EWG

PDB ID:

5EWG 

Release:

2016-01-13

Title:

Ternary complex of human DNA polymerase eta inserting rATP opposite an 8-Oxodeoxyguanosine Lesion

Classification:

TRANSFERASE/DNA

Authors:

Su, Y., Egli, M., Guengerich, F.P.

Citation:

Mechanism of Ribonucleotide Incorporation by Human DNA Polymerase eta.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.178R free:0.215

NDB ID:

5H8W

PDB ID:

5H8W 

Release:

2016-01-13

Title:

XPD mechanism

Classification:

HYDROLASE

Authors:

Naismith, J.H., White, M.F., Pendedo, J.C.P., Constantinescu, D.

Citation:

XPD mechanism
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.207R free:0.243

NDB ID:

5D8K

PDB ID:

5D8K 

Release:

2016-01-06

Title:

Human HSF2 DNA-Binding Domain bound to 2-site HSE DNA at 1.73 Angstroms Resolution

Classification:

transcription/dna

Authors:

Jaeger, A.M., Pemble, C.W., Sistonen, L., Thiele, D.J.

Citation:

Structures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors.
Nat.Struct.Mol.Biol. 23 pp.147 - 154 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.728Å R work:0.147R free:0.199

NDB ID:

5D8L

PDB ID:

5D8L 

Release:

2016-01-06

Title:

Human HSF2 DNA Binding Domain in complex with 3-site HSE DNA at 2.1 Angstroms Resolution

Classification:

transcription/DNA

Authors:

Jaeger, A.M., Pemble, C.W., Sistonen, L., Thiele, D.J.

Citation:

Structures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors.
Nat.Struct.Mol.Biol. 23 pp.147 - 154 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.069Å R work:0.217R free:0.273

NDB ID:

5CNQ

PDB ID:

5CNQ 

Release:

2015-12-30

Title:

Crystal structure of the Holliday junction-resolving enzyme GEN1 (WT) in complex with product DNA, Mg2+ and Mn2+ ions

Classification:

REPLICATION

Authors:

Liu, Y., Freeman, A.D., Declais, A.C., Wilson, T.J., Gartner, A., Lilley, D.M.

Citation:

Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA.
Cell Rep 13 pp.2565 - 2575 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.602Å R work:0.211R free:0.252

NDB ID:

5D5U

PDB ID:

5D5U 

Release:

2015-12-30

Title:

Crystal structure of human Hsf1 with HSE DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.

Citation:

Structure of human heat-shock transcription factor 1 in complex with DNA.
Nat.Struct.Mol.Biol. 23 pp.140 - 146 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.91Å R work:0.222R free:0.267

NDB ID:

5D5V

PDB ID:

5D5V 

Release:

2015-12-30

Title:

Crystal structure of human Hsf1 with Satellite III repeat DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.

Citation:

Structure of human heat-shock transcription factor 1 in complex with DNA.
Nat.Struct.Mol.Biol. 23 pp.140 - 146 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.189R free:0.233

NDB ID:

5D5W

PDB ID:

5D5W 

Release:

2015-12-30

Title:

Crystal structure of Chaetomium thermophilum Skn7 with HSE DNA

Classification:

TRANSCRIPTION

Authors:

Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.

Citation:

Structure of human heat-shock transcription factor 1 in complex with DNA.
Nat.Struct.Mol.Biol. 23 pp.140 - 146 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.215R free:0.25

NDB ID:

5D5X

PDB ID:

5D5X 

Release:

2015-12-30

Title:

Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA

Classification:

TRANSCRIPTION

Authors:

Neudegger, T., Verghese, J., Hayer-Hartl, M., Hartl, F.U., Bracher, A.

Citation:

Structure of human heat-shock transcription factor 1 in complex with DNA.
Nat.Struct.Mol.Biol. 23 pp.140 - 146 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.227R free:0.288

NDB ID:

NA3277

PDB ID:

4ROE 

Release:

2015-12-30

Title:

Human TFIIB-related factor 2 (Brf2) and TBP bound to RPPH1 promoter

Classification:

TRANSCRIPTION

Authors:

Gouge, J., Satia, K., Guthertz, N., Widya, M., Thompson, A.J., Cousin, P., Dergai, O., Hernandez, N., Vannini, A.

Citation:

Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.
Cell(Cambridge,Mass.) 163 pp.1375 - 1387 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.191R free:0.221

NDB ID:

NA3278

PDB ID:

4ROD 

Release:

2015-12-30

Title:

Human TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1 promoter

Classification:

TRANSCRIPTION

Authors:

Gouge, J., Satia, K., Guthertz, N., Widya, M., Thompson, A.J., Cousin, P., Dergai, O., Hernandez, N., Vannini, A.

Citation:

Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.
Cell(Cambridge,Mass.) 163 pp.1375 - 1387 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.2R free:0.247

NDB ID:

NA3279

PDB ID:

4ROC 

Release:

2015-12-30

Title:

Human TFIIB-related factor 2 (Brf2) and TBP bound to U6#2 promoter

Classification:

TRANSCRIPTION

Authors:

Gouge, J., Satia, K., Guthertz, N., Widya, M., Thompson, A.J., Cousin, P., Dergai, O., Hernandez, N., Vannini, A.

Citation:

Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.
Cell(Cambridge,Mass.) 163 pp.1375 - 1387 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.185R free:0.215

NDB ID:

4ZHN

PDB ID:

4ZHN 

Release:

2015-12-23

Title:

Crystal Structure of AlkB T208A mutant protein in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T

Classification:

Oxidoreductase/DNA

Authors:

Hall, M.L., Ergel, B., Miller, E.B., Yu, B., Rinaldo, D., Hunt, J.F., Friesner, R.

Citation:

DFT Studies of the Rate-Limiting Step in the Reaction Cycle of the Fe/2OG Dioxygenase AlkB and Related Experimental Studies
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.333Å R work:0.117R free:0.147

NDB ID:

5CBX

PDB ID:

5CBX 

Release:

2015-12-23

Title:

AncGR DNA Binding Domain - (+)GRE Complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H.

Citation:

Epistasis drives the evolution of a multifunctional protein
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.21R free:0.229

NDB ID:

5CBY

PDB ID:

5CBY 

Release:

2015-12-23

Title:

AncGR2 DNA Binding Domain - (+)GRE Complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H.

Citation:

Epistasis drives the evolution of a multifunctional protein
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.997Å R work:0.182R free:0.216

NDB ID:

5CBZ

PDB ID:

5CBZ 

Release:

2015-12-23

Title:

AncMR DNA Binding Domain - (+)GRE Complex

Classification:

dna binding protein/dna

Authors:

Hudson, W.H.

Citation:

Epistasis drives the evolution of a multifunctional protein
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.195R free:0.23