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As of 16-Jun-2021 number of released structures: 11407
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7739  Download results as an excel file       Gallery view

NDB ID:

 6YWW

PDB ID:

6YWW 

Release:

2021-06-16

Title:

MeCP2 is a microsatellite binding protein that protects CA repeats from nucleosome invasion

Classification:

DNA BINDING PROTEIN

Authors:

Ibrahim, A., Papin, C., Mohideen-Abdul, K., Gras, S.L., Stoll, I., Bronner, C., Dimitrov, S., Hamiche, A., Klaholz, B.P.

Citation:

MeCP2 is a microsatellite binding protein that protects CA repeats from nucleosome invasion
Science pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.102Å R work:0.22R free:0.259

NDB ID:

 7CQ4

PDB ID:

7CQ4 

Release:

2021-06-16

Title:

Crystal structure of Slx1-Slx4 in complex with 5'flap DNA

Classification:

HYDROLASE

Authors:

Xu, X., Wang, M., Sun, J., Li, G., Yang, N., Xu, R.M.

Citation:

Structural insights into substrate DNA recognition by the SLX1-SLX4 endonuclease complex
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.294Å R work:0.235R free:0.267

NDB ID:

 7CVO

PDB ID:

7CVO 

Release:

2021-06-16

Title:

crystal structure of Arabidopsis CO CCT domain in complex with NF-YB3/YC4 and FT CORE2 DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lv, X., Zeng, X., Hu, H., Chen, L., Zhang, F., Liu, R., Liu, Y., Zhou, X., Wang, C., Wu, Z., Kim, C., He, Y., Du, J.

Citation:

Structural insights into the multivalent binding of the Arabidopsis FLOWERING LOCUS T promoter by the CO-NF-Y master transcription factor complex.
Plant Cell 33 pp.1182 - 1195 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.196R free:0.22

NDB ID:

 7CVQ

PDB ID:

7CVQ 

Release:

2021-06-16

Title:

crystal structure of Arabidopsis CO CCT domain in complex with NF-YB2/YC3 and FT CORE1 DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lv, X., Zeng, X., Hu, H., Chen, L., Zhang, F., Liu, R., Liu, Y., Zhou, X., Wang, C., Wu, Z., Kim, C., He, Y., Du, J.

Citation:

Structural insights into the multivalent binding of the Arabidopsis FLOWERING LOCUS T promoter by the CO-NF-Y master transcription factor complex.
Plant Cell 33 pp.1182 - 1195 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.3Å R work:0.241R free:0.264

NDB ID:

 7E5P

PDB ID:

7E5P 

Release:

2021-06-16

Title:

Aptamer enhancing peroxidase activity of myoglobin

Classification:

DNA

Authors:

Tsukakoshi, K., Yamagishi, Y., Kanazashi, M., Nakama, K., Oshikawa, D., Savory, N., Matsugami, A., Hayashi, F., Lee, J., Saito, T., Sode, K., Khunathai, K., Kuno, H., Ikebukuro, K.

Citation:

G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol.
Nucleic Acids Res. pp. - 2021

Experiment:

 SOLUTION NMR

NDB ID:

 7MG5

PDB ID:

7MG5 

Release:

2021-06-16

Title:

Concanavalin A bound to a DNA glycoconjugate, Man-ATAT

Classification:

SUGAR BINDING PROTEIN/DNA

Authors:

Partridge, B.E., Winegar, P.H., Han, Z., Mirkin, C.A.

Citation:

Redefining Protein Interfaces within Protein Single Crystals with DNA
J.Am.Chem.Soc. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.201R free:0.245

NDB ID:

 7MG6

PDB ID:

7MG6 

Release:

2021-06-16

Title:

Concanavalin A bound to a DNA glycoconjugate, Man-AGCT

Classification:

SUGAR BINDING PROTEIN/DNA

Authors:

Partridge, B.E., Winegar, P.H., Han, Z., Mirkin, C.A.

Citation:

Redefining Protein Interfaces within Protein Single Crystals with DNA
J.Am.Chem.Soc. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.177R free:0.207

NDB ID:

 7MG7

PDB ID:

7MG7 

Release:

2021-06-16

Title:

Concanavalin A bound to a DNA glycoconjugate, Man-GTAC

Classification:

SUGAR BINDING PROTEIN/DNA

Authors:

Partridge, B.E., Winegar, P.H., Han, Z., Mirkin, C.A.

Citation:

Redefining Protein Interfaces within Protein Single Crystals with DNA
Journal of the American Chemical Society pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.75Å R work:0.186R free:0.215

NDB ID:

 7MG8

PDB ID:

7MG8 

Release:

2021-06-16

Title:

Concanavalin A bound to a DNA glycoconjugate, Man-CGCG

Classification:

SUGAR BINDING PROTEIN/DNA

Authors:

Partridge, B.E., Winegar, P.H., Han, Z., Mirkin, C.A.

Citation:

Redefining Protein Interfaces within Protein Single Crystals with DNA
Journal of the American Chemical Society pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.233R free:0.284

NDB ID:

 7MG9

PDB ID:

7MG9 

Release:

2021-06-16

Title:

Concanavalin A bound to DNA glycoconjugates, Man-TTTT and Man-AAAA

Classification:

SUGAR BINDING PROTEIN/DNA

Authors:

Partridge, B.E., Winegar, P.H., Han, Z., Mirkin, C.A.

Citation:

Redefining Protein Interfaces within Protein Single Crystals with DNA
Journal of the American Chemical Society pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.25R free:0.314

NDB ID:

 7MGA

PDB ID:

7MGA 

Release:

2021-06-16

Title:

Concanavalin A bound to a DNA glycoconjugate, Man-AAATTT

Classification:

SUGAR BINDING PROTEIN/DNA

Authors:

Partridge, B.E., Winegar, P.H., Han, Z., Mirkin, C.A.

Citation:

Redefining Protein Interfaces within Protein Single Crystals with DNA
Journal of the American Chemical Society pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.195R free:0.229

NDB ID:

 6LWA

PDB ID:

6LWA 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing 5-hydroxyuracil (5-OHU)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.76Å R work:0.207R free:0.245

NDB ID:

 6LWB

PDB ID:

6LWB 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing 5-hydroxyuracil (5-OHU)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.209R free:0.252

NDB ID:

 6LWC

PDB ID:

6LWC 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing spiroiminodihydantoin (Sp)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.91Å R work:0.19R free:0.242

NDB ID:

 6LWD

PDB ID:

6LWD 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing spiroiminodihydantoin (Sp)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.41Å R work:0.211R free:0.254

NDB ID:

 6LWF

PDB ID:

6LWF 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing guanidinohydantoin (Gh)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.79Å R work:0.185R free:0.243

NDB ID:

 6LWG

PDB ID:

6LWG 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing guanidinohydantoin (Gh)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.53Å R work:0.207R free:0.253

NDB ID:

 6LWH

PDB ID:

6LWH 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing dihydrothymine (DHT)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.78Å R work:0.2R free:0.242

NDB ID:

 6LWI

PDB ID:

6LWI 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing dihydrothymine (DHT)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.72Å R work:0.204R free:0.247

NDB ID:

 6LWJ

PDB ID:

6LWJ 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing dihydrouracil (DHU)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.83Å R work:0.199R free:0.241

NDB ID:

 6LWK

PDB ID:

6LWK 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing dihydrouracil (DHU)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.88Å R work:0.201R free:0.239

NDB ID:

 6LWL

PDB ID:

6LWL 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(R242) bound to duplex DNA containing 2'-fluoro-2'-deoxy-5,6-dihydrouridine

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.209R free:0.252

NDB ID:

 6LWM

PDB ID:

6LWM 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(K242) bound to duplex DNA containing 2'-fluoro-2'-deoxy-5,6-dihydrouridine

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.67Å R work:0.204R free:0.258

NDB ID:

 6LWN

PDB ID:

6LWN 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(R242, G249P) bound to duplex DNA containing 2'-fluoro-2'-deoxy-5,6-dihydrouridine

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.74Å R work:0.199R free:0.245

NDB ID:

 6LWO

PDB ID:

6LWO 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(R242, Y244H) bound to duplex DNA containing 2'-fluoro-2'-deoxy-5,6-dihydrouridine

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.51Å R work:0.202R free:0.242

NDB ID:

 6LWP

PDB ID:

6LWP 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(R242, Y244R) bound to duplex DNA containing 2'-fluoro-2'-deoxy-5,6-dihydrouridine

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.64Å R work:0.203R free:0.231

NDB ID:

 6LWQ

PDB ID:

6LWQ 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(R242) bound to duplex DNA containing a C:T mismatch

Classification:

DNA BINDING PROTEIN

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.89Å R work:0.237R free:0.282

NDB ID:

 6LWR

PDB ID:

6LWR 

Release:

2021-06-09

Title:

Crystal structure of human NEIL1(K242) bound to duplex DNA containing a cleaved C:T mismatch

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, M., Zhang, J., Zhu, C., Zhang, X., Xiao, W., Yan, Y., Liu, L., Zhang, H., Gao, Y.Q., Yi, C.

Citation:

DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.208R free:0.247

NDB ID:

 6XBU

PDB ID:

6XBU 

Release:

2021-06-09

Title:

polymerase domain of polymerase-theta

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Chen, X., Pomerantz, R., Zhao, J.

Citation:

Structure of Polymerase
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.29Å R work:0.25R free:0.28

NDB ID:

 7ECF

PDB ID:

7ECF 

Release:

2021-06-09

Title:

Crystal Structure of d(G4C2)2-Ba in C2221 space group

Classification:

DNA

Authors:

Geng, Y., Liu, C., Cai, Q., Luo, Z., Miao, H., Shi, X., Xu, N., Fung, C.P., Choy, T.T., Yan, B., Li, N., Qian, P., Zhou, B., Zhu, G.

Citation:

Crystal structure of parallel G-quadruplex formed by the two-repeat ALS- and FTD-related GGGGCC sequence.
Nucleic Acids Res. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.14R free:0.171

NDB ID:

 7ECG

PDB ID:

7ECG 

Release:

2021-06-09

Title:

Crystal Structure of d(G4C2)2-Ba in F222 space group

Classification:

DNA

Authors:

Geng, Y., Liu, C., Cai, Q., Luo, Z., Miao, H., Shi, X., Xu, N., Fung, C.P., Choy, T.T., Yan, B., Li, N., Qian, P., Zhou, B., Zhu, G.

Citation:

Crystal structure of parallel G-quadruplex formed by the two-repeat ALS- and FTD-related GGGGCC sequence.
Nucleic Acids Res. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.97Å R work:0.235R free:0.253

NDB ID:

 7ECH

PDB ID:

7ECH 

Release:

2021-06-09

Title:

Crystal Structure of d(G4C2)2-K in F222 space group

Classification:

DNA

Authors:

Geng, Y., Liu, C., Cai, Q., Luo, Z., Miao, H., Shi, X., Xu, N., Fung, C.P., Choy, T.T., Yan, B., Li, N., Qian, P., Zhou, B., Zhu, G.

Citation:

Crystal structure of parallel G-quadruplex formed by the two-repeat ALS- and FTD-related GGGGCC sequence.
Nucleic Acids Res. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.38Å R work:0.214R free:0.259

NDB ID:

 6X5D

PDB ID:

6X5D 

Release:

2021-06-02

Title:

Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-T modification

Classification:

DNA

Authors:

Chen, C., Huang, Z.

Citation:

SYNTHESIS OF SELENIUM AND TELLURIUM MODIFIED NUCLEIC ACIDS FOR DNA CRYSTALLIZATION, STRUCTURE AND FUNCTION STUDIES
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.15Å R work:0.206R free:0.224

NDB ID:

 6X6D

PDB ID:

6X6D 

Release:

2021-06-02

Title:

Glucocorticoid Receptor DNA binding domain in complex with unmodified precursor for a modern recognition element (pre-GBS)

Classification:

DNA/DNA BINDING PROTEIN

Authors:

Liu, X., Weikum, E.R., Ortlund, E.A.

Citation:

Structural basis for glucocorticoid receptor recognition of both unmodified and methylated binding sites, precursors for a modern recognition element
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.48Å R work:0.19R free:0.211

NDB ID:

 6X6E

PDB ID:

6X6E 

Release:

2021-06-02

Title:

Glucocorticoid Receptor DNA binding domain in complex with methylated precursor for a modern recognition element (methylated pre-GBS)

Classification:

DNA BINDING PROTEIN

Authors:

Liu, X., Weikum, E.R., Ortlund, E.A.

Citation:

Structural basis for glucocorticoid receptor recognition of both unmodified and methylated binding sites, precursors for a modern recognition element
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.181R free:0.212

NDB ID:

 7M7L

PDB ID:

7M7L 

Release:

2021-06-02

Title:

Human DNA Pol eta with dA-ended primer and dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.58Å R work:0.175R free:0.213

NDB ID:

 7M7M

PDB ID:

7M7M 

Release:

2021-06-02

Title:

Human DNA Pol eta with rA-ended primer and dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.46Å R work:0.18R free:0.211

NDB ID:

 7M7N

PDB ID:

7M7N 

Release:

2021-06-02

Title:

Human DNA Pol eta with 2'-FA-ended primer and dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.31Å R work:0.184R free:0.21

NDB ID:

 7M7O

PDB ID:

7M7O 

Release:

2021-06-02

Title:

Human DNA Pol eta with dT-ended primer and 0.1 mM dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.179R free:0.223

NDB ID:

 7M7P

PDB ID:

7M7P 

Release:

2021-06-02

Title:

Human DNA Pol eta S113A with dA-ended primer and dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.199R free:0.242

NDB ID:

 7M7Q

PDB ID:

7M7Q 

Release:

2021-06-02

Title:

Human DNA Pol eta S113A with dT-ended primer and dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.27Å R work:0.168R free:0.223

NDB ID:

 7M7R

PDB ID:

7M7R 

Release:

2021-06-02

Title:

Human DNA Pol eta S113A with rA-ended primer and dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.81Å R work:0.182R free:0.22

NDB ID:

 7M7S

PDB ID:

7M7S 

Release:

2021-06-02

Title:

Human DNA Pol eta S113A with dT-ended primer and 0.1 mM dAMPNPP

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.85Å R work:0.18R free:0.228

NDB ID:

 7M7T

PDB ID:

7M7T 

Release:

2021-06-02

Title:

Human DNA Pol eta S113A with dT-ended primer and dATP: in crystallo reaction for 0 s

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.46Å R work:0.179R free:0.208

NDB ID:

 7M7U

PDB ID:

7M7U 

Release:

2021-06-02

Title:

Human DNA Pol eta S113A with dT-ended primer and dATP: in crystallo reaction for 480s

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.94Å R work:0.178R free:0.221

NDB ID:

 7M7Y

PDB ID:

7M7Y 

Release:

2021-06-02

Title:

Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 0 s

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.176R free:0.221

NDB ID:

 7M7Z

PDB ID:

7M7Z 

Release:

2021-06-02

Title:

Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 40 s

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.82Å R work:0.18R free:0.227

NDB ID:

 7M80

PDB ID:

7M80 

Release:

2021-06-02

Title:

Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 100 s

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.98Å R work:0.156R free:0.214

NDB ID:

 7M81

PDB ID:

7M81 

Release:

2021-06-02

Title:

Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 100 s

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.17R free:0.226

NDB ID:

 7M82

PDB ID:

7M82 

Release:

2021-06-02

Title:

Human DNA Pol eta with dA-ended primer and dATP: in crystallo reaction for 300 s

Classification:

TRANSFERASE/DNA

Authors:

Gregory, M.T., Gao, Y., Cui, Q., Yang, W.

Citation:

Multiple deprotonation paths of the nucleophile 3'-OH in the DNA synthesis reaction
Proc.Natl.Acad.Sci.USA pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.07Å R work:0.165R free:0.224

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