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As of 27-May-2020 number of released structures: 10766
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7306  Download results as an excel file       Gallery view

NDB ID:

 6KI3

PDB ID:

6KI3 

Release:

2020-05-27

Title:

The crystal structure of AsfvAP:dF commplex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, Y., Chen, X., Huang, Q., Shao, Z., Gao, Y., Li, Y., Yang, C., Liu, H., Li, J., Wang, Q., Ma, J., Zhang, Y.Z., Gu, Y., Gan, J.

Citation:

A unique DNA-binding mode of African swine fever virus AP endonuclease.
Cell Discov 6 pp.13 - 13 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.354Å R work:0.207R free:0.243

NDB ID:

 6P45

PDB ID:

6P45 

Release:

2020-05-27

Title:

Crystal structure of the G-quadruplex formed by (TGGGT)4 in complex with N-methylmesoporphryin IX

Classification:

DNA

Authors:

Yatsunyk, L.A., Lin, L.Y., Powell, B.

Citation:

Biophysical and X-ray structural characterization of the (GGGTT)3GGG G-quadruplex in complex with N-methylmesoporphryin IX
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.339Å R work:0.2R free:0.224

NDB ID:

 6VYP

PDB ID:

6VYP 

Release:

2020-05-27

Title:

Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate

Classification:

NUCLEAR PROTEIN/DNA

Authors:

Kim, S.A., Zhu, J., Yennawar, N., Eek, P., Tan, S.

Citation:

Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate.
Mol.Cell pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.99Å R work:0.229R free:0.277

NDB ID:

 6Y35

PDB ID:

6Y35 

Release:

2020-05-27

Title:

CCAAT-binding complex from Aspergillus fumigatus with cycA DNA

Classification:

TRANSCRIPTION

Authors:

Hortschansky, P., Misslinger, M., Moerl, J., Gsaller, F., Bromley, M.J., Brakhage, A.A., Groll, M., Haas, H., Huber, E.M.

Citation:

Structural basis of HapE-P88L based antifungal triazole resistance in Aspergillus fumigatus
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.191R free:0.231

NDB ID:

 6Y36

PDB ID:

6Y36 

Release:

2020-05-27

Title:

CCAAT-binding complex from Aspergillus fumigatus with cccA DNA

Classification:

TRANSCRIPTION

Authors:

Hortschansky, P., Misslinger, M., Moerl, J., Gsaller, F., Bromley, M.J., Brakhage, A.A., Groll, M., Haas, H., Huber, E.M.

Citation:

Structural basis of HapE-P88L based antifungal triazole resistance in Aspergillus fumigatus
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.186R free:0.21

NDB ID:

 6Y37

PDB ID:

6Y37 

Release:

2020-05-27

Title:

CCAAT-binding complex from Aspergillus nidulans with cccA DNA

Classification:

TRANSCRIPTION

Authors:

Hortschansky, P., Misslinger, M., Moerl, J., Gsaller, F., Bromley, M.J., Brakhage, A.A., Groll, M., Haas, H., Huber, E.M.

Citation:

Structural basis of HapE-P88L based antifungal triazole resistance in Aspergillus fumigatus
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.195R free:0.217

NDB ID:

 6Y39

PDB ID:

6Y39 

Release:

2020-05-27

Title:

HapE-P88L mutant CCAAT-binding complex from Aspergillus nidulans with cycA DNA

Classification:

TRANSCRIPTION

Authors:

Hortschansky, P., Misslinger, M., Moerl, J., Gsaller, F., Bromley, M.J., Brakhage, A.A., Groll, M., Haas, H., Huber, E.M.

Citation:

Structural basis of HapE-P88L based antifungal triazole resistance in Aspergillus fumigatus
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.22R free:0.254

NDB ID:

 6S48

PDB ID:

6S48 

Release:

2020-05-20

Title:

AvaII RESTRICTION ENDONUCLEASE IN COMPLEX WITH PARTIALLY CLEAVED dsDNA

Classification:

HYDROLASE

Authors:

Kisiala, M., Kowalska, M., Pastor, M., Korza, H., Czapinska, H., Bochtler, M.

Citation:

Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.176R free:0.216

NDB ID:

 6WG6

PDB ID:

6WG6 

Release:

2020-05-20

Title:

Crystal structure of human SMC1-SMC3 hinge domain heterodimer in north-open conformation

Classification:

CELL CYCLE/DNA

Authors:

Shi, Z., Gao, H., Bai, X.C., Yu, H.

Citation:

Cryo-EM structure of the human cohesin-NIPBL-DNA complex.
Science pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.54Å R work:0.251R free:0.288

NDB ID:

 6LMJ

PDB ID:

6LMJ 

Release:

2020-05-13

Title:

ASFV pA104R in complex with double-strand DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, R., Sun, Y., Chai, Y., Li, S., Li, S., Wang, L., Su, J., Yu, S., Yan, J., Gao, F., Zhang, G., Qiu, H.J., Gao, G.F., Qi, J., Wang, H.

Citation:

The structural basis of African swine fever virus pA104R binding to DNA and its inhibition by stilbene derivatives.
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.255R free:0.284

NDB ID:

 6R6D

PDB ID:

6R6D 

Release:

2020-05-06

Title:

[Ru(TAP)2(11,12-CN2-dppz)]2+ bound to d(TCGGCGCCGA)2

Classification:

DNA

Authors:

McQuaid, K.T., Hall, J.P., Cardin, C.J.

Citation:

Structure of [Ru(TAP)2(11,12-CN2-dppz)]2+ bound to d(TCGGCGCCGA)2
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.838Å R work:0.178R free:0.186

NDB ID:

 6JYW

PDB ID:

6JYW 

Release:

2020-04-29

Title:

Crystal structure of the transcription regulator CadR N81M mutant from P. putida in complex with Cadmium(II) and DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, X.C., Chen, H.

Citation:

Crystal structure of the transcription regulator CadR N81M mutant from P. putida in complex with Cadmium(II) and DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.95Å R work:0.202R free:0.252

NDB ID:

 6P7B

PDB ID:

6P7B 

Release:

2020-04-29

Title:

Crystal structure of Fowlpox virus resolvase and substrate Holliday junction DNA complex

Classification:

HYDROLASE/DNA

Authors:

Li, N., Shi, K., Rao, T., Banerjee, S., Aihara, H.

Citation:

Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase.
Sci Rep 10 pp.393 - 393 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.317Å R work:0.21R free:0.267

NDB ID:

 6RYD

PDB ID:

6RYD 

Release:

2020-04-29

Title:

WUS-HD bound to TGAA DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sloan, J., Hakenjos, J.P., Gebert, M., Ermakova, O., Gumiero, A., Stier, G., Wild, K., Sinning, I., Lohmann, J.U.

Citation:

Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL.
Nat Commun 11 pp.2223 - 2223 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.575Å R work:0.187R free:0.226

NDB ID:

 6RYI

PDB ID:

6RYI 

Release:

2020-04-29

Title:

WUS-HD bound to G-Box DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sloan, J., Hakenjos, J.P., Gebert, M., Ermakova, O., Gumiero, A., Stier, G., Wild, K., Sinning, I., Lohmann, J.U.

Citation:

Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL.
Nat Commun 11 pp.2223 - 2223 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.691Å R work:0.194R free:0.251

NDB ID:

 6RYL

PDB ID:

6RYL 

Release:

2020-04-29

Title:

WUS-HD bound to TAAT DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sloan, J., Hakenjos, J.P., Gebert, M., Ermakova, O., Gumiero, A., Stier, G., Wild, K., Sinning, I., Lohmann, J.U.

Citation:

Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL.
Nat Commun 11 pp.2223 - 2223 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.63Å R work:0.237R free:0.263

NDB ID:

 6T78

PDB ID:

6T78 

Release:

2020-04-29

Title:

Structure of human Sox11 transcription factor in complex with a short DNA fragment

Classification:

NUCLEAR PROTEIN

Authors:

Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.

Citation:

Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.
Nature 580 pp.669 - 672 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.504Å R work:0.226R free:0.257

NDB ID:

 6YCS

PDB ID:

6YCS 

Release:

2020-04-29

Title:

Human Transcription Cofactor PC4 DNA-binding domain in complex with full phosphorothioate 5-10-5 2'-O-methyl DNA gapmer antisense oligonucleotide.

Classification:

TRANSCRIPTION

Authors:

Hyjek-Skladanowska, M., Vickers, T.A., Napiorkowska, A., Anderson, B.A., Tanowitz, M., Crooke, S.T., Liang, X.H., Seth, P.P., Nowotny, M.

Citation:

Origins of the Increased Affinity of Phosphorothioate-Modified Therapeutic Nucleic Acids for Proteins.
J.Am.Chem.Soc. 142 pp.7456 - 7468 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.05Å R work:0.237R free:0.317

NDB ID:

 6JVZ

PDB ID:

6JVZ 

Release:

2020-04-22

Title:

RVD HA specifically contacts 5mC through van der Waals interactions

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

RVD HA specifically contacts 5mC through van der Waals interactions
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.48Å R work:0.223R free:0.275

NDB ID:

 6JW0

PDB ID:

6JW0 

Release:

2020-04-22

Title:

Universal RVD R* accommodates cytosine via water-mediated interactions

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

Universal RVD R* accommodates cytosine via water-mediated interactions
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.222R free:0.262

NDB ID:

 6JW1

PDB ID:

6JW1 

Release:

2020-04-22

Title:

Universal RVD R* accommodates 5mC via water-mediated interactions

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

Universal RVD R* accommodates 5mC via water-mediated interactions
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.49Å R work:0.229R free:0.278

NDB ID:

 6JW2

PDB ID:

6JW2 

Release:

2020-04-22

Title:

Universal RVD R* accommodates 5hmC via water-mediated interactions

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

Universal RVD R* accommodates 5hmC via water-mediated interactions
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.03Å R work:0.237R free:0.261

NDB ID:

 6JW3

PDB ID:

6JW3 

Release:

2020-04-22

Title:

Degenerate RVD RG forms a distinct loop conformation

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

Universal RVD R* accommodates 5mC via water-mediated interactions
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.242R free:0.277

NDB ID:

 6JW4

PDB ID:

6JW4 

Release:

2020-04-22

Title:

Degenerate RVD RG forms a distinct loop conformation

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

Degenerate RVD RG forms a distinct loop conformation
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.09Å R work:0.243R free:0.274

NDB ID:

 6JW5

PDB ID:

6JW5 

Release:

2020-04-22

Title:

RVD Q* recognizes 5hmC through water-mediated H bonds

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

RVD Q* recognizes 5hmC through water-mediated H bonds
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.99Å R work:0.243R free:0.266

NDB ID:

 6JWD

PDB ID:

6JWD 

Release:

2020-04-22

Title:

structure of RET G-quadruplex in complex with berberine

Classification:

DNA

Authors:

Wang, F., Wang, C., Liu, Y., Lan, W., Han, H., Wang, R., Huang, S., Cao, C.

Citation:

Colchicine selective interaction with oncogene RET G-quadruplex revealed by NMR.
Chem.Commun.(Camb.) 56 pp.2099 - 2102 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6KE9

PDB ID:

6KE9 

Release:

2020-04-22

Title:

The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Soman, A., Liew, C.W., Teo, H.L., Berezhnoy, N., Olieric, V., Korolev, N., Rhodes, D., Nordenskiold, L.

Citation:

Crystal Structure and Solution Properties of the Telomeric Nucleosome
Biorxiv pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.22Å R work:0.203R free:0.23

NDB ID:

 6L9H

PDB ID:

6L9H 

Release:

2020-04-22

Title:

The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Soman, A., Liew, C.W., Teo, H.L., Berezhnoy, N., Olieric, V., Korolev, N., Rhodes, D., Nordenskiold, L.

Citation:

Crystal Structure and Solution Properties of the Telomeric Nucleosome
Biorxiv pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.236R free:0.277

NDB ID:

 6LE9

PDB ID:

6LE9 

Release:

2020-04-22

Title:

The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Soman, A., Liew, C.W., Teo, H.L., Berezhnoy, N., Olieric, V., Korolev, N., Rhodes, D., Nordenskiold, L.

Citation:

Crystal Structure and Solution Properties of the Telomeric Nucleosome
Biorxiv pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.238R free:0.28

NDB ID:

 6PLC

PDB ID:

6PLC 

Release:

2020-04-22

Title:

Structure of human DNA polymerase eta complexed with 8OA in the template base paired with incoming non-hydrolyzable GTP

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Koag, M.C., Jung, H., Lee, S.

Citation:

Mutagenesis mechanism of the major oxidative adenine lesion 7,8-dihydro-8-oxoadenine.
Nucleic Acids Res. 48 pp.5119 - 5134 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.178R free:0.272

NDB ID:

 6JTQ

PDB ID:

6JTQ 

Release:

2020-04-15

Title:

RVD HA specifically contacts 5mC through van der Waals interactions

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Liu, L., Yi, C.

Citation:

RVD HA specifically contacts 5mC through van der Waals interactions
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.48Å R work:0.217R free:0.283

NDB ID:

 6N65

PDB ID:

6N65 

Release:

2020-04-15

Title:

KRAS G-quadruplex G16T mutant.

Classification:

DNA

Authors:

Ou, A., Schmidberger, J.W., Wilson, K.A., W Evans, C., Hargreaves, J.A., Grigg, M., O'Mara, M.L., Iyer, K.S., Bond, C.S., Smith, N.M.

Citation:

High resolution crystal structure of a KRAS promoter G-quadruplex reveals a dimer with extensive poly-A pi-stacking interactions for small-molecule recognition.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.21R free:0.24

NDB ID:

 6RNM

PDB ID:

6RNM 

Release:

2020-04-15

Title:

Crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.76Å R work:0.168R free:0.187

NDB ID:

 6RNO

PDB ID:

6RNO 

Release:

2020-04-15

Title:

Crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.158R free:0.197

NDB ID:

 6RNR

PDB ID:

6RNR 

Release:

2020-04-15

Title:

The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.003Å R work:0.173R free:0.194

NDB ID:

 6RO2

PDB ID:

6RO2 

Release:

2020-04-15

Title:

The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.821Å R work:0.155R free:0.172

NDB ID:

 6ROK

PDB ID:

6ROK 

Release:

2020-04-15

Title:

The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.95Å R work:0.167R free:0.195

NDB ID:

 6RP0

PDB ID:

6RP0 

Release:

2020-04-15

Title:

The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.163R free:0.201

NDB ID:

 6RP7

PDB ID:

6RP7 

Release:

2020-04-15

Title:

The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Classification:

HYDROLASE

Authors:

Rieux, C., Goffinont, S., Coste, F., Tber, Z., Cros, J., Roy, V., Guerin, M., Gaudon, V., Bourg, S., Biela, A., Aucagne, V., Agrofoglio, L., Garnier, N., Castaing, B.

Citation:

Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights.
Int J Mol Sci 21 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.165R free:0.185

NDB ID:

 6V8U

PDB ID:

6V8U 

Release:

2020-04-15

Title:

Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a modified Kaiso binding sequence (KBS)

Classification:

DNA BINDING PROTEIN

Authors:

Nikolova, E.N., Stanfield, R.L., Dyson, H.J., Wright, P.E.

Citation:

A conformational switch in the zinc finger protein Kaiso mediates differential readout of specific and methylated DNA sequences.
Biochemistry pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.103Å R work:0.172R free:0.203

NDB ID:

 6W89

PDB ID:

6W89 

Release:

2020-04-15

Title:

Structure of DNMT3A (R882H) in complex with CGA DNA

Classification:

TRANSFERASE/DNA

Authors:

Anteneh, H., Fang, J., Song, J.

Citation:

Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun 11 pp.2294 - 2294 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.499Å R work:0.195R free:0.24

NDB ID:

 6W8B

PDB ID:

6W8B 

Release:

2020-04-15

Title:

Structure of DNMT3A in complex with CGA DNA

Classification:

TRANSFERASE/DNA

Authors:

Anteneh, H., Fang, J., Song, J.

Citation:

Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun 11 pp.2294 - 2294 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.212R free:0.232

NDB ID:

 6W8D

PDB ID:

6W8D 

Release:

2020-04-15

Title:

Structure of DNMT3A (R882H) in complex with CGT DNA

Classification:

TRANSFERASE/DNA

Authors:

Anteneh, H., Fang, J., Song, J.

Citation:

Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun 11 pp.2294 - 2294 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.598Å R work:0.199R free:0.252

NDB ID:

 6W8J

PDB ID:

6W8J 

Release:

2020-04-15

Title:

Structure of DNMT3A (R882H) in complex with CAG DNA

Classification:

TRANSFERASE/DNA

Authors:

Anteneh, H., Fang, J., Song, J.

Citation:

Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun 11 pp.2294 - 2294 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.445Å R work:0.183R free:0.222

NDB ID:

 6WCK

PDB ID:

6WCK 

Release:

2020-04-15

Title:

KRAS G-quadruplex G16T mutant with Bromo Uracil replacing T8 and T16.

Classification:

DNA

Authors:

Ou, A., Schmidberger, J.W., Wilson, K.A., W Evans, C., Hargreaves, J.A., Grigg, M., O'Mara, M.L., Iyer, K.S., Bond, C.S., Smith, N.M.

Citation:

High resolution crystal structure of a KRAS promoter G-quadruplex reveals a dimer with extensive poly-A pi-stacking interactions for small-molecule recognition.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.801Å R work:0.196R free:0.241

NDB ID:

 6KSF

PDB ID:

6KSF 

Release:

2020-04-08

Title:

Crystal Structure of ALKBH1 bound to 21-mer DNA bulge

Classification:

GENE REGULATION

Authors:

Zhang, M., Yang, S., Nelakanti, R., Zhao, W., Liu, G., Li, Z., Liu, X., Wu, T., Xiao, A., Li, H.

Citation:

Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA.
Cell Res. 30 pp.197 - 210 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.228R free:0.271

NDB ID:

 6KVO

PDB ID:

6KVO 

Release:

2020-04-08

Title:

Crystal structure of chloroplast resolvase in complex with Holliday junction

Classification:

PLANT PROTEIN/DNA

Authors:

Yan, J., Hong, S., Guan, Z., He, W., Zhang, D., Yin, P.

Citation:

Structural insights into sequence-dependent Holliday junction resolution by the chloroplast resolvase MOC1.
Nat Commun 11 pp.1417 - 1417 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.201R free:0.234

NDB ID:

 6LCT

PDB ID:

6LCT 

Release:

2020-04-08

Title:

Crystal structure of catalytic inactive chloroplast resolvase NtMOC1 in complex with Holliday junction

Classification:

HYDROLASE/DNA

Authors:

Yan, J., Hong, S., Guan, Z., He, W., Zhang, D., Yin, P.

Citation:

Structural insights into sequence-dependent Holliday junction resolution by the chloroplast resolvase MOC1.
Nat Commun 11 pp.1417 - 1417 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.219R free:0.244

NDB ID:

 6SDG

PDB ID:

6SDG 

Release:

2020-04-08

Title:

Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA

Classification:

TRANSCRIPTION

Authors:

Kato, H., Mutte, S.K., Suzuki, H., Crespo, I., Das, S., Radoeva, T., Fontana, M., Yoshitake, Y., Hainiwa, E., van den Berg, W., Lindhoud, S., Hohlbein, J., Borst, J.W., Boer, D.R., Nishihama, R., Kohchi, T., Ishizak, K., Weijers, D.

Citation:

Design principles of a minimal auxin response system
Nat.Plants pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.96Å R work:0.214R free:0.277

NDB ID:

 6JPI

PDB ID:

6JPI 

Release:

2020-04-01

Title:

Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa

Classification:

ANTITOXIN/DNA

Authors:

Liu, Y., Gao, Z., Zhang, H., Dong, Y.

Citation:

Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.143Å R work:0.215R free:0.28

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