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As of 15-Sep-2021 number of released structures: 11696
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7984  Download results as an excel file       Gallery view

NDB ID:

7ET4

PDB ID:

7ET4 

Release:

2021-09-15

Title:

Crystal structure of Arabidopsis TEM1 AP2 domain

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hu, H., Tian, S., Xie, G., Liu, R., Wang, N., Li, S., He, Y., Du, J.

Citation:

TEM1 combinatorially binds to FLOWERING LOCUS T and recruits a Polycomb factor to repress the floral transition in Arabidopsis.
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.202R free:0.233

NDB ID:

7ET6

PDB ID:

7ET6 

Release:

2021-09-15

Title:

Crystal structure of Arabidopsis TEM1 B3-DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Hu, H., Tian, S., Xie, G., Liu, R., Wang, N., Li, S., He, Y., Du, J.

Citation:

TEM1 combinatorially binds to FLOWERING LOCUS T and recruits a Polycomb factor to repress the floral transition in Arabidopsis.
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.231R free:0.266

NDB ID:

7OX7

PDB ID:

7OX7 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with TRAC chimeric RNA-DNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.209R free:0.229

NDB ID:

7OX8

PDB ID:

7OX8 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with TRAC full RNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.209R free:0.247

NDB ID:

7OX9

PDB ID:

7OX9 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with AAVS1 all-RNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.194R free:0.232

NDB ID:

7OXA

PDB ID:

7OXA 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with AAVS1 chimeric RNA-DNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.197R free:0.225

NDB ID:

7RFK

PDB ID:

7RFK 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor Sinefungin

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile-specific DNA adenine methyltransferase and sporulation regulator CamA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.188R free:0.224

NDB ID:

7RFL

PDB ID:

7RFL 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC0946

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile-specific DNA adenine methyltransferase and sporulation regulator CamA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.38Å R work:0.204R free:0.233

NDB ID:

7RFM

PDB ID:

7RFM 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor EPZ004777

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile-specific DNA adenine methyltransferase and sporulation regulator CamA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.68Å R work:0.181R free:0.228

NDB ID:

7RFN

PDB ID:

7RFN 

Release:

2021-09-15

Title:

CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC8158

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhou, J., Horton, J.R., Yu, D., Blumenthal, R.M., Zhang, X., Cheng, X.

Citation:

Repurposing epigenetic inhibitors to target the Clostridioides difficile-specific DNA adenine methyltransferase and sporulation regulator CamA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.194R free:0.231

NDB ID:

7JVT

PDB ID:

7JVT 

Release:

2021-09-08

Title:

Crystal structure of a lambda-186 hybrid repressor

Classification:

GENE REGULATION/DNA

Authors:

Truong, J.Q., Pukala, T., Bruning, J.B., Shearwin, K.S.

Citation:

Crystal structure of a hybrid lambda-186 repressor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.16Å R work:0.228R free:0.281

NDB ID:

7KUL

PDB ID:

7KUL 

Release:

2021-09-08

Title:

DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.64Å R work:0.207R free:0.246

NDB ID:

6VEZ

PDB ID:

6VEZ 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.875Å R work:0.166R free:0.205

NDB ID:

6VF0

PDB ID:

6VF0 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.58Å R work:0.163R free:0.187

NDB ID:

6VF1

PDB ID:

6VF1 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.68Å R work:0.162R free:0.187

NDB ID:

6VF2

PDB ID:

6VF2 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.168R free:0.192

NDB ID:

6VF3

PDB ID:

6VF3 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.521Å R work:0.162R free:0.179

NDB ID:

6VF4

PDB ID:

6VF4 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.167R free:0.192

NDB ID:

6VF5

PDB ID:

6VF5 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.164R free:0.19

NDB ID:

6VF6

PDB ID:

6VF6 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.165R free:0.188

NDB ID:

6VF7

PDB ID:

6VF7 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.871Å R work:0.165R free:0.196

NDB ID:

6VF8

PDB ID:

6VF8 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.168R free:0.191

NDB ID:

6VF9

PDB ID:

6VF9 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.165R free:0.181

NDB ID:

6VFA

PDB ID:

6VFA 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.76Å R work:0.174R free:0.202

NDB ID:

6VFB

PDB ID:

6VFB 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.166R free:0.181

NDB ID:

6VFC

PDB ID:

6VFC 

Release:

2021-09-01

Title:

DNA Polymerase Mu, 8-oxorGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (2160 min)

Classification:

REPLICATION

Authors:

Jamsen, J.A., Sassa, A., Shock, D.D., Beard, W.A., Wilson, S.H.

Citation:

DNA Polymerase Mu, 8-oxorGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (2160 min)
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.59Å R work:0.172R free:0.192

NDB ID:

6VTX

PDB ID:

6VTX 

Release:

2021-09-01

Title:

Crystal structure of human KLF4 zinc finger DNA binding domain in complex with NANOG DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sharma, R., Sharma, S., Choi, K.J., Ferreon, A.C.M., Ferreon, J.C., Banumathi, S., Kim, C.W.

Citation:

Crystal structure of human KLF4 zinc finger DNA binding domain in complex with NANOG DNA.
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.14Å R work:0.216R free:0.247

NDB ID:

7DFY

PDB ID:

7DFY 

Release:

2021-09-01

Title:

Novel motif for left-handed G-quadruplex formation

Classification:

DNA

Authors:

Das, P., Winnerdy, F.R., Maity, A., Mechulam, Y., Phan, A.T.

Citation:

A novel minimal motif for left-handed G-quadruplex formation.
Chem.Commun.(Camb.) 57 pp.2527 - 2530 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.69Å R work:0.201R free:0.258

NDB ID:

7EYI

PDB ID:

7EYI 

Release:

2021-09-01

Title:

Crystal structure of ZBTB7A in complex with gamma-globin -200 sequence element with C-194A mutation

Classification:

STRUCTURAL PROTEIN

Authors:

Yang, Y., Ren, R., Ly, L., Horton, J., Li, F., Quinlan, K., Crossley, M., Shi, Y.Y., Cheng, X.

Citation:

Structural basis for human ZBTB7A action at the fetal globin promoter.
Cell Rep pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.401Å R work:0.222R free:0.266

NDB ID:

7KW4

PDB ID:

7KW4 

Release:

2021-09-01

Title:

L-DNA containing 2'-fluoro modification

Classification:

DNA

Authors:

Zhang, W., Zhang, Y.

Citation:

L-DNA containing 2'-fluoro modification
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.03Å R work:0.166R free:0.173

NDB ID:

7O5E

PDB ID:

7O5E 

Release:

2021-09-01

Title:

The structure of an i-motif/duplex junction at neutral pH

Classification:

DNA

Authors:

Serrano-Chacon, I., Mir, B., Escaja, N., Gonzalez, C.

Citation:

The structure of an i-motif/duplex junctions at neutral pH
J.Med.Chem. pp. - 2021

Experiment:

SOLUTION NMR

NDB ID:

7RVA

PDB ID:

7RVA 

Release:

2021-09-01

Title:

Updated Crystal Structure of Replication Initiator Protein REPE54.

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ward, A.R., Dmytriw, S., Vajapayajula, A., Snow, C.D.

Citation:

Stabilizing DNA-protein co-crystals via in crystallo chemical ligation of the DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.89Å R work:0.207R free:0.248

NDB ID:

7CUH

PDB ID:

7CUH 

Release:

2021-08-25

Title:

Crystal structure of fission yeast Pot1 and ssDNA

Classification:

DNA BINDING PROTEIN

Authors:

Sun, H., Wu, Z., Wu, J., Lei, M.

Citation:

Structural Insights into Telomere Protection and Homeostasis Regulation by Yeast Cdc13-Stn1-Ten1 Complex
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.267R free:0.297

NDB ID:

7N5S

PDB ID:

7N5S 

Release:

2021-08-25

Title:

ZBTB7A Zinc Finger Domain Bound to -200 Site of Fetal Globin Promoter (Oligo 6)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, Y., Ren, R., Ly, L., Horton, J.R., Dong, L.F., Quinlan, K., Crossley, M., Shi, Y., Cheng, X.

Citation:

Structural basis for human ZBTB7A action at the fetal globin promoter
Cell Rep pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.86Å R work:0.225R free:0.272

NDB ID:

7N5T

PDB ID:

7N5T 

Release:

2021-08-25

Title:

ZBTB7A Zinc Finger Domain Bound to -200 Site of Fetal Globin Promoter (Oligo 5)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Yang, Y., Ren, R., Ly, L., Horton, J.R., Dong, L.F., Quinlan, K., Crossley, M., Shi, Y., Cheng, X.

Citation:

Structural basis for human ZBTB7A action at the fetal globin promoter
Cell Rep pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.246R free:0.309

NDB ID:

7CPW

PDB ID:

7CPW 

Release:

2021-08-18

Title:

Complex structure of DNA with self-catalyzed depurination activity

Classification:

TRANSFERASE/DNA

Authors:

Gan, J.H.

Citation:

Complex structure of DNA with self-catalyzed depurination activity
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.849Å R work:0.195R free:0.255

NDB ID:

7CSK

PDB ID:

7CSK 

Release:

2021-08-18

Title:

A 2:1 stoichiometric complex of anticancer drug Adriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.

Classification:

DNA

Authors:

Barthwal, R., Tariq, Z., Pandav, K.

Citation:

A 2:1 stoichiometric complex of anticancer drug Adriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7K9Y

PDB ID:

7K9Y 

Release:

2021-08-18

Title:

GsI-IIC RT Template-Switching Complex (twinned)

Classification:

RNA BINDING PROTEIN/RNA/DNA

Authors:

Lentzsch, A.M., Stamos, J.L., Yao, J., Russell, R., Lambowitz, A.M.

Citation:

Structural basis for template switching by a group II intron-encoded non-LTR-retroelement reverse transcriptase.
J.Biol.Chem. 297 pp.100971 - 100971 2021

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.27R free:0.324

NDB ID:

6WIG

PDB ID:

6WIG 

Release:

2021-08-11

Title:

Structure of STENOFOLIA Protein HD domain bound with DNA

Classification:

PLANT PROTEIN/DNA

Authors:

Deng, J., Peng, S., Pathak, P.

Citation:

Structure of STENOFOLIA Protein bound with DNA Reveals a Unique Tetrameric Plant Transcriptional Repressor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.194R free:0.249

NDB ID:

7ATG

PDB ID:

7ATG 

Release:

2021-08-11

Title:

Crystal structure of Z-DNA in complex with putrescinium and potassium cations at ultrahigh-resolution

Classification:

DNA

Authors:

Drozdzal, P., Gilski, M., Jaskolski, M.

Citation:

Crystal structure of Z-DNA in complex with the polyamine putrescine and potassium cations at ultra-high resolutionDedicated as a birthday tribute to Professor Wladek Minor, champion of quality and reproducibility in biostructural research, and a longtime friend.
Acta Crystallogr.,Sect.B pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:0.6Å R work:0.087R free:0.094

NDB ID:

7COW

PDB ID:

7COW 

Release:

2021-08-11

Title:

353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Bao, Q., Padavattan, S., Shum, W.K., Davey, G.E., Davey, C.A.

Citation:

Engineering nucleosomes for generating diverse chromatin assemblies.
Nucleic Acids Res. 49 pp.e52 - e52 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.86Å R work:0.224R free:0.297

NDB ID:

7CPS

PDB ID:

7CPS 

Release:

2021-08-11

Title:

A 2:1 stoichiometric complex of anticancer drug 4'-Epiadriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.

Classification:

DNA

Authors:

Barthwal, R., Tariq, Z., Pandav, K.

Citation:

A 2:1 stoichiometric complex of anticancer drug 4'-Epiadriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7CQA

PDB ID:

7CQA 

Release:

2021-08-11

Title:

Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate

Classification:

TRANSCRIPTION/DNA

Authors:

Liu, Y.H., Zhang, L.S., Wu, B.X., Huang, H.D.

Citation:

Pectobacterium phage ZF40 apo-aca2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.208R free:0.223

NDB ID:

7ABS

PDB ID:

7ABS 

Release:

2021-08-04

Title:

Structure of human DCLRE1C/Artemis in complex with DNA - re-evaluation of 6WO0

Classification:

LYASE

Authors:

Yosaatmadja, Y., Baddock, H.T., Newman, J.A., Bielinski, M., Gavard, A.E., Mukhopadhyay, S.M.M., Dannerfjord, A.A., Schofield, C.J., McHugh, P.J., Gileadi, O.

Citation:

Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition.
Nucleic Acids Res. pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:1.97Å R work:0.215R free:0.275

NDB ID:

7DBM

PDB ID:

7DBM 

Release:

2021-08-04

Title:

HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V:DNA:dGTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Nakajima, S., Watashi, K., Kato, T., Muramatsu, M., Wakita, T., Tamura, N., Hattori, S.I., Maeda, K., Mitsuya, H., Yasutake, Y., Toyoda, T.

Citation:

Biochemical and Structural Properties of Entecavir-Resistant Hepatitis B Virus Polymerase with L180M/M204V Mutations.
J.Virol. 95 pp.e0240120 - e0240120 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.43Å R work:0.18R free:0.224

NDB ID:

7DBN

PDB ID:

7DBN 

Release:

2021-08-04

Title:

HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V/F160M:DNA:dCTP ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Nakajima, S., Watashi, K., Kato, T., Muramatsu, M., Wakita, T., Tamura, N., Hattori, S.I., Maeda, K., Mitsuya, H., Yasutake, Y., Toyoda, T.

Citation:

Biochemical and Structural Properties of Entecavir-Resistant Hepatitis B Virus Polymerase with L180M/M204V Mutations.
J.Virol. 95 pp.e0240120 - e0240120 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.67Å R work:0.176R free:0.224

NDB ID:

7JLH

PDB ID:

7JLH 

Release:

2021-08-04

Title:

Structure of Centromeric Satellite III Non-canonical Duplex

Classification:

DNA

Authors:

Yatsunyk, L.A., Chen, E.V., Lee, H.

Citation:

Crystal Structure of 4-repeat Satellite III Sequence with Non-Canonical Base Interactions
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.57Å R work:0.22R free:0.255

NDB ID:

7L4C

PDB ID:

7L4C 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CTT DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.11Å R work:0.185R free:0.214

NDB ID:

7L4F

PDB ID:

7L4F 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CAT DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.208R free:0.25

NDB ID:

7L4H

PDB ID:

7L4H 

Release:

2021-08-04

Title:

Crystal structure of the DRM2-CTG DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Fang, J., Leichter, S.M., Jiang, J., Biswal, M., Lu, J., Zhang, Z.M., Ren, W., Zhai, J., Cui, Q., Zhong, X., Song, J.

Citation:

Substrate deformation regulates DRM2-mediated DNA methylation in plants.
Sci Adv 7 pp. - 2021

Experiment:

X-RAY DIFFRACTION Resolution:2.56Å R work:0.208R free:0.247