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As of 13-Sep-2017 number of released structures: 9117
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6159  Download results as an excel file       Gallery view

NDB ID:

5N6I

PDB ID:

5N6I 

Release:

2017-09-13

Title:

Crystal structure of mouse cGAS in complex with 39 bp DNA

Classification:

TRANSFERASE

Authors:

Andreeva, L., Hiller, B., Kostrewa, D., Lassig, C., de Oliveira Mann, C.C., Drexler, D.J., Maiser, A., Gaidt, M., Leonhardt, H., Hornung, V., Hopfner, K.-P.

Citation:

cGAS senses long and HMGB/TFAM-bound U-turn DNA by forming protein-DNA ladders
Nature pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.203R free:0.256

NDB ID:

5VAJ

PDB ID:

5VAJ 

Release:

2017-09-13

Title:

BhRNase H - amide-RNA/DNA complex

Classification:

hydrolase/rna/dna

Authors:

Mutisya, D., Hardcastle, T., Cheruiyot, S.K., Pallan, P.S., Kennedy, S.D., Egli, M., Kelley, M.L., Smith, A.V.B., Rozners, E.

Citation:

Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.
Nucleic Acids Res. 45 pp.8142 - 8155 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.165R free:0.216

NDB ID:

5WNX

PDB ID:

5WNX 

Release:

2017-09-13

Title:

DNA polymerase beta substrate complex with incoming 6-TdGTP

Classification:

DNA LIGASE/DNA, TRANSFERASE

Authors:

Schaich, M.A., Smith, M.R., Cloud, A.S., Holloran, S.M., Freudenthal, B.D.

Citation:

Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues.
Chem. Res. Toxicol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.206R free:0.289

NDB ID:

5WNY

PDB ID:

5WNY 

Release:

2017-09-13

Title:

DNA polymerase beta substrate complex with incoming 5-FdUTP

Classification:

DNA LIGASE/DNA, TRANSFERASE

Authors:

Schaich, M.A., Smith, M.R., Cloud, A.S., Holloran, S.M., Freudenthal, B.D.

Citation:

Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues.
Chem. Res. Toxicol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.18R free:0.237

NDB ID:

5WNZ

PDB ID:

5WNZ 

Release:

2017-09-13

Title:

DNA polymerase beta substrate complex with incoming 5-FodCTP

Classification:

DNA LIGASE/DNA, TRANSFERASE

Authors:

Schaich, M.A., Smith, M.R., Cloud, A.S., Holloran, S.M., Freudenthal, B.D.

Citation:

Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues.
Chem. Res. Toxicol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.192R free:0.254

NDB ID:

5WO0

PDB ID:

5WO0 

Release:

2017-09-13

Title:

DNA polymerase beta substrate complex with incoming 5-FodUTP

Classification:

DNA LIGASE/DNA, TRANSFERASE

Authors:

Schaich, M.A., Smith, M.R., Cloud, A.S., Holloran, S.M., Freudenthal, B.D.

Citation:

Structures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues.
Chem. Res. Toxicol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.2R free:0.23

NDB ID:

5XFP

PDB ID:

5XFP 

Release:

2017-09-13

Title:

Binary complex of PHF1 and a double stranded DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, Z., Li, H.

Citation:

Binary complex of PHF1 and a double stranded DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.208R free:0.243

NDB ID:

5XFQ

PDB ID:

5XFQ 

Release:

2017-09-13

Title:

Ternary complex of PHF1, a DNA duplex and a histone peptide

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, Z., Li, H.

Citation:

Ternary complex of PHF1, a DNA duplex and a histone peptide
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.222R free:0.257

NDB ID:

5XFR

PDB ID:

5XFR 

Release:

2017-09-13

Title:

Ternary complex of MTF2, DNA and histone

Classification:

TRANSCRIPTION/DNA

Authors:

Wang, Z., Li, H.

Citation:

Ternary complex of MTF2, DNA and histone
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.202R free:0.23

NDB ID:

5VPE

PDB ID:

5VPE 

Release:

2017-09-06

Title:

Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-I crystal

Classification:

transcription/dna

Authors:

Yin, Z., Machius, M., Nestler, E.J., Rudenko, G.

Citation:

Activator Protein-1: Redox Switch Controlling Structure & DNA-Binding
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.053Å R work:0.217R free:0.253

NDB ID:

5VPF

PDB ID:

5VPF 

Release:

2017-09-06

Title:

Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-II crystal

Classification:

transcription/dna

Authors:

Yin, Z., Machius, M., Nestler, E.J., Rudenko, G.

Citation:

Activator Protein-1: Redox Switch Controlling Structure & DNA-Binding
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.694Å R work:0.21R free:0.248

NDB ID:

6ALS

PDB ID:

6ALS 

Release:

2017-09-06

Title:

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position

Classification:

DNA

Authors:

Gruber, D.R., Shernyukov, A.V., Endutkin, A.V., Bagryanskaya, E.G., Zharkov, D.O., Smirnov, S.L.

Citation:

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6ALU

PDB ID:

6ALU 

Release:

2017-09-06

Title:

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 8-oxoguanine at the 4th position

Classification:

DNA

Authors:

Gruber, D.R., Shernyukov, A.V., Endutkin, A.V., Bagryanskaya, E.G., Zharkov, D.O., Smirnov, S.L.

Citation:

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 8-oxoguanine at the 4th position
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5GUN

PDB ID:

5GUN 

Release:

2017-08-30

Title:

Crystal structure of d(GTGGAATGGAAC)

Classification:

DNA

Authors:

Huang, T.-Y., Chang, C.-K., Kao, Y.-F., Chin, C.-H., Ni, C.-W., Hsu, H.-Y., Hu, N.-J., Hsieh, L.-C., Chou, S.-H., Lee, I.-R., Hou, M.-H.

Citation:

Parity-dependent hairpin configurations of repetitive DNA sequence promote slippage associated with DNA expansion
Proc.Natl.Acad.Sci.Usa pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.588Å R work:0.242R free:0.287

NDB ID:

5TXX

PDB ID:

5TXX 

Release:

2017-08-30

Title:

DNA Polymerase Mu Pre-Catalytic Ground State Ternary Complex, Ca2+

Classification:

TRANSFERASE/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.948Å R work:0.158R free:0.195

NDB ID:

5TXZ

PDB ID:

5TXZ 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, 100mM Mg2+ (15 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.651Å R work:0.165R free:0.194

NDB ID:

5TYB

PDB ID:

5TYB 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, 10mM Mg2+ (7.5 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.848Å R work:0.167R free:0.198

NDB ID:

5TYC

PDB ID:

5TYC 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, 10mM Mg2+ (15 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.101Å R work:0.196R free:0.236

NDB ID:

5TYD

PDB ID:

5TYD 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, 10 mM Mg2+ (45 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.899Å R work:0.171R free:0.211

NDB ID:

5TYE

PDB ID:

5TYE 

Release:

2017-08-30

Title:

DNA Polymerase Mu Product Complex, 10 mM Mg2+ (60 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.047Å R work:0.185R free:0.228

NDB ID:

5TYF

PDB ID:

5TYF 

Release:

2017-08-30

Title:

DNA Polymerase Mu Product Complex, 10 mM Mg2+ (270 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.971Å R work:0.173R free:0.204

NDB ID:

5TYG

PDB ID:

5TYG 

Release:

2017-08-30

Title:

DNA Polymerase Mu Product Complex, 10 mM Mg2+ (960 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.726Å R work:0.154R free:0.185

NDB ID:

5TYU

PDB ID:

5TYU 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, Mn2+ (4 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.048Å R work:0.186R free:0.212

NDB ID:

5TYV

PDB ID:

5TYV 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, Mn2+ (7.5 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.93Å R work:0.188R free:0.217

NDB ID:

5TYW

PDB ID:

5TYW 

Release:

2017-08-30

Title:

DNA Polymerase Mu Reactant Complex, Mn2+ (10 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.88Å R work:0.176R free:0.207

NDB ID:

5TYX

PDB ID:

5TYX 

Release:

2017-08-30

Title:

DNA Polymerase Mu Product Complex, Mn2+ (15 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.948Å R work:0.185R free:0.216

NDB ID:

5TYY

PDB ID:

5TYY 

Release:

2017-08-30

Title:

DNA Polymerase Mu Product Complex, Mn2+ (60 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.931Å R work:0.185R free:0.217

NDB ID:

5TYZ

PDB ID:

5TYZ 

Release:

2017-08-30

Title:

DNA Polymerase Mu Product Complex, Mn2+ (960 min)

Classification:

Transferase/DNA

Authors:

Jamsen, J.A., Beard, W.A., Pedersen, L.C., Shock, D.D., Moon, A.F., Krahn, J.M., Bebenek, K., Kunkel, T.A., Wilson, S.H.

Citation:

Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun 8 pp.253 - 253 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.977Å R work:0.175R free:0.214

NDB ID:

5W1Z

PDB ID:

5W1Z 

Release:

2017-08-30

Title:

Crystal Structure of inosine-substituted decamer duplex DNA (I4)

Classification:

DNA

Authors:

Peters, J.P., Kowal, E.A., Pallan, P.S., Egli, M., Maher, L.J.

Citation:

Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.
J. Biomol. Struct. Dyn. pp.1 - 20 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.206R free:0.233

NDB ID:

5X5L

PDB ID:

5X5L 

Release:

2017-08-30

Title:

Crystal structure of response regulator AdeR DNA binding domain in complex with an intercistronic region

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Wen, Y., Ouyang, Z., Yu, Y., Zhou, X., Pei, Y., Devreese, B., Higgins, P.G., Zheng, F.

Citation:

Mechanistic insight into how multidrug resistant Acinetobacter baumannii response regulator AdeR recognizes an intercistronic region
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.277R free:0.295

NDB ID:

6AQT

PDB ID:

6AQT 

Release:

2017-08-30

Title:

Crystal Structure of Z-DNA with 6-fold Twinning_Z3A

Classification:

DNA

Authors:

Luo, Z., Dauter, Z., Gilski, M.

Citation:

Four highly twinned structures of d(CGCGCG)2 extend the repertoire of pseudohexagonal crystal structures of Z-DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.05Å R work:0.193R free:0.231

NDB ID:

6AQV

PDB ID:

6AQV 

Release:

2017-08-30

Title:

Crystal Structure of Z-DNA with 6-fold Twinning_Z3B

Classification:

DNA

Authors:

Luo, Z., Dauter, Z., Gilski, M.

Citation:

Four highly twinned structures of d(CGCGCG)2 extend the repertoire of pseudohexagonal crystal structures of Z-DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.3Å R work:0.13R free:0.147

NDB ID:

6AQW

PDB ID:

6AQW 

Release:

2017-08-30

Title:

Crystal Structure of Z-DNA with 6-fold Twinning_Z4A

Classification:

DNA

Authors:

Luo, Z., Dauter, Z., Gilski, M.

Citation:

Four highly twinned structures of d(CGCGCG)2 extend the repertoire of pseudohexagonal crystal structures of Z-DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.3Å R work:0.168R free:0.184

NDB ID:

6AQX

PDB ID:

6AQX 

Release:

2017-08-30

Title:

Crystal Structure of Z-DNA with 6-fold Twinning_Z4B

Classification:

DNA

Authors:

Luo, Z., Dauter, Z., Gilski, M.

Citation:

Four highly twinned structures of d(CGCGCG)2 extend the repertoire of pseudohexagonal crystal structures of Z-DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.208R free:0.226

NDB ID:

5GWI

PDB ID:

5GWI 

Release:

2017-08-23

Title:

Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873R

Classification:

ISOMERASE/DNA/ISOMERASE INHIBITOR

Authors:

Wang, Y.R., Chien, T.C., Chen, S.F., Wu, C.C., Chan, N.L.

Citation:

Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873R
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.737Å R work:0.213R free:0.253

NDB ID:

5GWJ

PDB ID:

5GWJ 

Release:

2017-08-23

Title:

Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873S

Classification:

ISOMERASE/DNA/ISOMERASE INHIBITOR

Authors:

Wang, Y.R., Chien, T.C., Chen, S.F., Wu, C.C., Chan, N.L.

Citation:

Structure of a Human topoisomerase IIbeta fragment in complex with DNA and E7873S
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.566Å R work:0.183R free:0.225

NDB ID:

5GWK

PDB ID:

5GWK 

Release:

2017-08-23

Title:

Human topoisomerase IIalpha in complex with DNA and etoposide

Classification:

ISOMERASE/DNA/ISOMERASE INHIBITOR

Authors:

Wang, Y.R., Wu, C.C., Chan, N.L.

Citation:

Human topoisomerase IIalpha in complex with DNA and etoposide
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.152Å R work:0.202R free:0.243

NDB ID:

5KVY

PDB ID:

5KVY 

Release:

2017-08-23

Title:

CRYSTAL STRUCTURE OF THE TWO TANDEM RRM DOMAINS OF PUF60 BOUND TO A PORTION OF AN ADML PRE-MRNA 3' SPLICE SITE ANALOG

Classification:

SPLICING/DNA

Authors:

Hsiao, H.-H., Crichlow, G.V., Albright, R.A., Murphy, J.W., Folta-Stogniew, E.J., Lolis, E.J., Braddock, D.T.

Citation:

Recognition of the 3' AdML intron by the alternative splicing factor PUF60
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.195R free:0.231

NDB ID:

5KW1

PDB ID:

5KW1 

Release:

2017-08-23

Title:

Crystal Structure of the Two Tandem RRM Domains of PUF60 Bound to a Modified AdML Pre-mRNA 3' Splice Site Analogue

Classification:

splicing/dna

Authors:

Hsiao, H.-H., Crichlow, G.V., Albright, R.A., Murphy, J.W., Folta-Stogniew, E.J., Lolis, E.J., Braddock, D.T.

Citation:

Recognition of the 3' AdML intron by the alternative splicing factor PUF60
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.219R free:0.237

NDB ID:

5KW6

PDB ID:

5KW6 

Release:

2017-08-23

Title:

Two Tandem RRM Domains of PUF60 Bound to an AdML Pre-mRNA 3' Splice Site Analogue with a Modified Binding-Site Nucleic Acid Base

Classification:

splicing/dna

Authors:

Hsiao, H.-H., Crichlow, G.V., Albright, R.A., Murphy, J.W., Folta-Stogniew, E.J., Lolis, E.J., Braddock, D.T.

Citation:

Recognition of the 3' AdML intron by the alternative splicing factor PUF60
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.91Å R work:0.21R free:0.225

NDB ID:

5T4W

PDB ID:

5T4W 

Release:

2017-08-23

Title:

Crystal structure of a DNA sequence d (CGTGAATTCACG) with DAPI

Classification:

DNA

Authors:

Sbirkova, H., Shivachev, B.

Citation:

Crystal structure of a DNA sequence d (CGTGAATTCACG) with DAPI
Acta Crystallogr.,Sect.F 73 pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.215R free:0.258

NDB ID:

5T5K

PDB ID:

5T5K 

Release:

2017-08-23

Title:

Structure of histone-based chromatin in Archaea

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Mattiroli, F., Bhattacharyya, S., Dyer, P.N., White, A.E., Sandman, K., Burkhart, B.W., Byrne, K.R., Lee, T., Ahn, N.G., Santangelo, T.J., Reeve, J.N., Luger, K.

Citation:

Structure of histone-based chromatin in Archaea.
Science 357 pp.609 - 612 2017

Experiment:

X-RAY DIFFRACTION Resolution:4.0Å R work:0.214R free:0.261

NDB ID:

5V3G

PDB ID:

5V3G 

Release:

2017-08-23

Title:

PRDM9-allele-C ZnF8-13

Classification:

transferase/dna

Authors:

Patel, A., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structural basis of human PRDM9 allele C specific recognition of its cognate DNA sequence.
J. Biol. Chem. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.416Å R work:0.173R free:0.225

NDB ID:

5W20

PDB ID:

5W20 

Release:

2017-08-23

Title:

Crystal Structure of inosine-substituted duplex DNA

Classification:

DNA

Authors:

Peters, J.P., Kowal, E.A., Pallan, P.S., Egli, M., Maher, L.J.

Citation:

Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.
J. Biomol. Struct. Dyn. pp.1 - 20 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.36Å R work:0.147R free:0.18

NDB ID:

5O6U

PDB ID:

5O6U 

Release:

2017-08-16

Title:

Structure of the Cascade-I-Fv R-loop complex from Shewanella putrefaciens

Classification:

ANTIVIRAL PROTEIN

Authors:

Pausch, P., Muller-Esparza, H., Gleditzsch, D., Altegoer, F., Randau, L., Bange, G.

Citation:

Structural Variation of Type I-F CRISPR RNA Guided DNA Surveillance.
Mol. Cell 67 pp.622 - 632.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.252R free:0.285

NDB ID:

5VXQ

PDB ID:

5VXQ 

Release:

2017-08-16

Title:

X-Ray crystallography structure of the parallel stranded duplex formed by 5-rA5-dA-rA5

Classification:

RNA, DNA

Authors:

Copp, W., Denisov, A., Gehring, K., Liczner, C., Noronha, A., Safaee, N., Wilds, C., Xie, J.

Citation:

Influence of Nucleotide Modifications at the C2' Position on the Hoogsteen Base-Paired Parallel-Stranded Duplex of Poly(A) RNA
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.002Å R work:0.128R free:0.159

NDB ID:

5W0U

PDB ID:

5W0U 

Release:

2017-08-16

Title:

Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with dCMP

Classification:

HYDROLASE/DNA

Authors:

Qiao, Q., Wang, L., Meng, F.L., Hwang, J.K., Alt, F.W., Wu, H.

Citation:

AID Recognizes Structured DNA for Class Switch Recombination.
Mol. Cell 67 pp.361 - 373.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.25R free:0.281

NDB ID:

5W1C

PDB ID:

5W1C 

Release:

2017-08-16

Title:

Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with cytidine

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Qiao, Q., Wang, L., Meng, F.L., Hwang, J.K., Alt, F.W., Wu, H.

Citation:

AID Recognizes Structured DNA for Class Switch Recombination.
Mol. Cell 67 pp.361 - 373.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.269

NDB ID:

5X07

PDB ID:

5X07 

Release:

2017-08-16

Title:

Crystal structure of FOXA2 DNA binding domain bound to a full consensus DNA site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Li, J., Machado, A.C.D., Guo, M., Sagendorf, J.M., Zhou, Z., Jiang, L., Chen, X., Wu, D., Qu, L., Chen, Z., Chen, L., Rohs, R., Chen, Y.

Citation:

Structure of the Forkhead Domain of FOXA2 Bound to a Complete DNA Consensus Site
Biochemistry 56 pp.3745 - 3753 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.796Å R work:0.239R free:0.278

NDB ID:

5XOG

PDB ID:

5XOG 

Release:

2017-08-16

Title:

RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1

Classification:

TRANSCRIPTION

Authors:

Ehara, H., Yokoyama, T., Shigematsu, H., Yokoyama, S., Shirouzu, M., Sekine, S.I.

Citation:

Structure of the complete elongation complex of RNA polymerase II with basal factors
Science 357 pp.921 - 924 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.195R free:0.225