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As of 17-Dec-2014 number of released structures: 7198
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 4895   (Gallery view)

NDB ID:

2MNA

PDB ID:

2MNA 

Release:

2014-12-17

Title:

The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gamsjaeger, R., Kariawasam, R., Gimenez, A.X., Touma, C., McIlwain, E., Bernardo, R.E., Shepherd, N.E., Ataide, S.F., Dong, Q., Richard, D.J., White, M.F., Cubeddu, L.

Citation:

The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus
Biochem.J. 465 pp.337 - 346 2015

Experiment:

SOLUTION NMR

NDB ID:

NA2835

PDB ID:

4O0I 

Release:

2014-12-17

Title:

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA

Classification:

TRANSFERASE/DNA

Authors:

Jiang, S., Gan, J., Sun, H., Huang, Z.

Citation:

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.203Å R work:0.176R free:0.227

NDB ID:

NA3033

PDB ID:

4QJU 

Release:

2014-12-17

Title:

Crystal structure of DNA-bound nucleoid associated protein, SAV1473

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kim, D.-H., Im, H., Jee, J.-G., Jang, S.-B., Yoon, H.-J., Kwon, A.-R., Kang, S.-M., Lee, B.-J.

Citation:

beta-Arm flexibility of HU from Staphylococcus aureus dictates the DNA-binding and recognition mechanism
Acta Crystallogr.,Sect.D 70 pp.3273 - 3289 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.16Å R work:0.187R free:0.248

NDB ID:

NA3326

PDB ID:

4D6N 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.182R free:0.217

NDB ID:

NA3327

PDB ID:

4D6O 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.185R free:0.22

NDB ID:

NA3329

PDB ID:

4UN8 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MN (STATE 2)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.178R free:0.223

NDB ID:

NA3330

PDB ID:

4UNA 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 2 DAYS INCUBATION IN 5MM MN (STATE 4)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.189R free:0.219

NDB ID:

NA3331

PDB ID:

4UNB 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 6 DAYS INCUBATION IN 5MM MN (STATE 5)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.177R free:0.221

NDB ID:

NA3332

PDB ID:

4UNC 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8 DAYS INCUBATION IN 5MM MN (STATE 6)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.184R free:0.224

NDB ID:

NA3333

PDB ID:

4UT0 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.182R free:0.228

NDB ID:

NA3051

PDB ID:

4QKK 

Release:

2014-12-10

Title:

Crystal structure of an oligonucleotide containing 5-formylcytosine

Classification:

DNA

Authors:

Raiber, E.-A., Murat, P., Chirgadze, D.Y., Beraldi, D., Luisi, B.F., Balasubramanian, S.

Citation:

5-Formylcytosine alters the structure of the DNA double helix.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.14R free:0.159

NDB ID:

NA3210

PDB ID:

4RI9 

Release:

2014-12-10

Title:

FAN1 Nuclease bound to 5' phosphorylated p(dT)/3'(dT-dT-dT-dT-dT-dT-dT-dT) double flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.226R free:0.266

NDB ID:

NA3255

PDB ID:

4RIA 

Release:

2014-12-10

Title:

FAN1 Nuclease bound to 5' phosphorylated nicked DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.224R free:0.267

NDB ID:

2MB2

PDB ID:

2MB2 

Release:

2014-12-03

Title:

parallel-stranded G-quadruplex in DNA poly-G stretches

Classification:

DNA

Authors:

Sengar, A., Heddi, B., Phan, A.T.

Citation:

Formation of G-quadruplexes in poly-G sequences: Structure of a propeller-type parallel-stranded G-quadruplex formed by a G15 stretch.
Biochemistry pp. - 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2986

PDB ID:

3WTP 

Release:

2014-12-03

Title:

Crystal Structure of the heterotypic nucleosome containing human CENP-A and H3.3

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Arimura, Y., Shirayama, K., Horikoshi, N., Fujita, R., Taguchi, H., Kagawa, W., Fukagawa, T., Almouzni, G., Kurumizaka, H.

Citation:

Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3
Sci Rep 4 pp.7115 - 7115 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.67Å R work:0.228R free:0.269

NDB ID:

NA3209

PDB ID:

4RI8 

Release:

2014-12-03

Title:

FAN1 Nuclease bound to 5' phosphorylated p(dG)/3'(dT-dT-dT-dT) double flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.22R free:0.254

NDB ID:

NA3211

PDB ID:

4RIC 

Release:

2014-12-03

Title:

FAN1 Nuclease bound to 5' hydroxyl (dT-dT) single flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.222R free:0.257

NDB ID:

NA3212

PDB ID:

4RIB 

Release:

2014-12-03

Title:

FAN1 Nuclease bound to 5' phosphorylated p(dT) single flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.225R free:0.265

NDB ID:

NA3321

PDB ID:

4UQG 

Release:

2014-12-03

Title:

A new bio-isosteric base pair based on reversible bonding

Classification:

TRANSFERASE/DNA

Authors:

Tomas-Gamasa, M., Serdjukow, S., Su, M., Muller, M., Carell, T.

Citation:

""Post-It"" Type Connected DNA Created with a Reversible Covalent Cross-Link.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.178R free:0.211

NDB ID:

NA3328

PDB ID:

4UN7 

Release:

2014-12-03

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA BEFORE INCUBATION IN 5MM MN (STATE 1)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.177R free:0.231

NDB ID:

NA2478

PDB ID:

4KWX 

Release:

2014-11-26

Title:

Linear structure of the Holliday junction sequence (TCGGCGCCGA)

Classification:

DNA

Authors:

Skamrova, G., Laponogov, I., Campbell, N., Neidle, S.

Citation:

Linear structure of the Holliday junction sequence (TCGGCGCCGA)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.3Å R work:0.172R free:0.187

NDB ID:

NA2496

PDB ID:

4KOE 

Release:

2014-11-26

Title:

Quinolone(Trovafloxacin)-DNA cleavage complex of type IV topoisomerase from S. pneumoniae

Classification:

ISOMERASE/DNA/INHIBITOR

Authors:

Laponogov, I., Pan, X.-S., Veselkov, D.A., Fisher, L.M., Sanderson, M.R.

Citation:

Inhibitor-stabilised cleavage complexes of topoisomerase IIa: structural analysis of drug-dependent inter- and intramolecular interactions
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.02Å R work:0.175R free:0.21

NDB ID:

NA2497

PDB ID:

4KPE 

Release:

2014-11-26

Title:

Novel fluoroquinolones in complex with topoisomerase IV from S. pneumoniae and E-site G-gate

Classification:

ISOMERASE/DNA/INHIBITOR

Authors:

Laponogov, I., Pan, X.-S., Vesekov, D.A., Cirz, R.T., Wagman, A.S., Moser, H.E., Fisher, L.M., Sanderson, M.R.

Citation:

Novel fluoroquinolones in complex with topoisomerase IV from S. pneumoniae and E-site G-gate
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.43Å R work:0.154R free:0.194

NDB ID:

NA2498

PDB ID:

4KPF 

Release:

2014-11-26

Title:

Novel fluoroquinolones in complex with topoisomerase IV from S. pneumoniae and E-site G-gate

Classification:

ISOMERASE/DNA/INHIBITOR

Authors:

Laponogov, I., Pan, X.-S., Vesekov, D.A., Cirz, R.T., Wagman, A.S., Moser, H.E., Fisher, L.M., Sanderson, M.R.

Citation:

Novel fluoroquinolones in complex with topoisomerase IV from S. pneumoniae and E-site G-gate
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.24Å R work:0.162R free:0.184

NDB ID:

NA2987

PDB ID:

4Q5V 

Release:

2014-11-26

Title:

Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and aphidicolin

Classification:

TRANSFERASE/DNA/RNA

Authors:

Baranovskiy, A.G., Babayeva, N.D., Suwa, Y., Gu, J., Pavlov, Y.I., Tahirov, T.H.

Citation:

Structural basis for inhibition of DNA replication by aphidicolin.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.52Å R work:0.232R free:0.268

NDB ID:

NA2994

PDB ID:

4QCL 

Release:

2014-11-26

Title:

Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and dCTP

Classification:

TRANSFERASE/DNA/RNA

Authors:

Baranovskiy, A.G., Babayeva, N.D., Suwa, Y., Gu, J., Tahirov, T.H.

Citation:

Crystal structure of human dna polymerase alpha catalytic core in complex with DNA/RNA and DCP
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.209R free:0.238

NDB ID:

2MKM

PDB ID:

2MKM 

Release:

2014-11-19

Title:

G-triplex structure and formation propensity

Classification:

DNA

Authors:

Cerofolini, L., Amato, J., Giachetti, A., Limongelli, V., Novellino, E., Parrinello, M., Fragai, M., Randazzo, A., Luchinat, C.

Citation:

G-triplex structure and formation propensity.
Nucleic Acids Res. 42 pp.13393 - 13404 2014

Experiment:

SOLUTION NMR

NDB ID:

2MKO

PDB ID:

2MKO 

Release:

2014-11-19

Title:

G-triplex structure and formation propensity

Classification:

DNA

Authors:

Cerofolini, L., Amato, J., Giachetti, A., Limongelli, V., Novellino, E., Parrinello, M., Fragai, M., Randazzo, A., Luchinat, C.

Citation:

G-triplex structure and formation propensity.
Nucleic Acids Res. 42 pp.13393 - 13404 2014

Experiment:

SOLUTION NMR

NDB ID:

NA3178

PDB ID:

4RDU 

Release:

2014-11-19

Title:

Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution

Classification:

TRANSCRIPTION/DNA

Authors:

Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)

Citation:

Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.182R free:0.225

NDB ID:

NA3145

PDB ID:

4R44 

Release:

2014-11-12

Title:

Racemic crystal structure of a tetramolecular DNA G-quadruplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.695Å R work:0.293R free:0.325

NDB ID:

NA3146

PDB ID:

4R45 

Release:

2014-11-12

Title:

Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.285R free:0.34

NDB ID:

NA3147

PDB ID:

4R47 

Release:

2014-11-12

Title:

Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.282R free:0.303

NDB ID:

NA3148

PDB ID:

4R48 

Release:

2014-11-12

Title:

Racemic crystal structure of a calcium-bound DNA four-way junction

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.33Å R work:0.285R free:0.34

NDB ID:

NA3149

PDB ID:

4R49 

Release:

2014-11-12

Title:

Racemic crystal structure of a calcium-bound B-DNA duplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.28Å R work:0.216R free:0.259

NDB ID:

NA3150

PDB ID:

4R4A 

Release:

2014-11-12

Title:

Racemic crystal structure of a cobalt-bound B-DNA duplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.49Å R work:0.208R free:0.232

NDB ID:

NA3151

PDB ID:

4R4D 

Release:

2014-11-12

Title:

Racemic crystal structure of a magnesium-bound B-DNA duplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.29Å R work:0.268R free:0.311

NDB ID:

NA2740

PDB ID:

4MTD 

Release:

2014-11-05

Title:

Zinc Uptake Regulator Complexed With Zinc AND DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gilston, B.A., Wang, S., Marcus, M.D., Canalizo-Hernandez, M.A., Swindell, E.P., Xue, Y., Mondragon, A., O'Halloran, T.V.

Citation:

Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon.
Plos Biol. 12 pp.e1001987 - e1001987 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.234R free:0.271

NDB ID:

NA2741

PDB ID:

4MTE 

Release:

2014-11-05

Title:

Zinc Uptake Regulator Complexed with Zinc and DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gilston, B.A., Wang, S., Marcus, M.D., Canalizo-Hernandez, M.A., Swindell, E.P., Xue, Y., Mondragon, A., O'Halloran, T.V.

Citation:

Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon.
Plos Biol. 12 pp.e1001987 - e1001987 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.217R free:0.256

NDB ID:

NA3164

PDB ID:

4R8P 

Release:

2014-11-05

Title:

Crystal structure of the Ring1B/Bmi1/UbcH5c PRC1 ubiquitylation module bound to the nucleosome core particle

Classification:

Structural Protein/DNA

Authors:

McGinty, R.K., Henrici, R.C., Tan, S.

Citation:

Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome.
Nature 514 pp.591 - 596 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2846Å R work:0.196R free:0.245

NDB ID:

2MFU

PDB ID:

2MFU 

Release:

2014-10-29

Title:

Solution NMR structure of quadruplex d(TGGGTTTGGGTTGGGTTTGGG) in sodium conditions

Classification:

DNA

Authors:

Karsisiotis, A., Dillon, P., Webba da Silva, M.

Citation:

Solution NMR structure of quadruplex d(TGGGTTTGGGTTGGGTTTGGG) in sodium conditions
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

NA2900

PDB ID:

4OLN 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 1 in complex with estrogen response element DNA

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.174R free:0.205

NDB ID:

NA2901

PDB ID:

4OND 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 2 DBD helix mutant - ERE DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.253Å R work:0.186R free:0.215

NDB ID:

NA2906

PDB ID:

4OOR 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 2 DNA binding domain in complex with a steroid response element

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.701Å R work:0.19R free:0.232

NDB ID:

NA2935

PDB ID:

4OV7 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 2 DBD helix mutant - SRE DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.701Å R work:0.198R free:0.231

NDB ID:

NA3162

PDB ID:

4R89 

Release:

2014-10-29

Title:

Crystal structure of paFAN1 - 5' flap DNA complex with Manganase

Classification:

Hydrolase/DNA

Authors:

Gwon, G.H., Kim, Y.R., Liu, Y., Watson, A.T., Jo, A., Etheridge, T.J., Yuan, F., Zhang, Y., Kim, Y.C., Carr, A.M., Cho, Y.

Citation:

Crystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1
Genes Dev. 28 pp.2276 - 2290 2014

Experiment:

X-RAY DIFFRACTION Resolution:4.002Å R work:0.223R free:0.278

NDB ID:

NA3163

PDB ID:

4R8A 

Release:

2014-10-29

Title:

Crystal structure of paFAN1 - 5' flap DNA complex

Classification:

Hydrolase/DNA

Authors:

Gwon, G.H., Kim, Y.R., Liu, Y., Watson, A.T., Jo, A., Etheridge, T.J., Yuan, F., Zhang, Y., Kim, Y.C., Carr, A.M., Cho, Y.

Citation:

Crystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1
Genes Dev. 28 pp.2276 - 2290 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.233

NDB ID:

2MFT

PDB ID:

2MFT 

Release:

2014-10-22

Title:

Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions

Classification:

DNA

Authors:

Karsisiotis, A.I., Webba da Silva, M.

Citation:

Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MNX

PDB ID:

2MNX 

Release:

2014-10-08

Title:

Major groove orientation of the (2S)-N6-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene

Classification:

DNA

Authors:

Kowal, E.A., Wickramaratne, S., Kotapati, S., Turo, M., Tretyakova, N., Stone, M.P.

Citation:

Major Groove Orientation of the (2S)-N(6)-(2-Hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA Adduct Induced by 1,2-Epoxy-3-butene.
Chem.Res.Toxicol. 27 pp.1675 - 1686 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2735

PDB ID:

4MS5 

Release:

2014-10-08

Title:

Lambda-[Ru(TAP)2(dppz-11,12-(F)2)]2+ bound to CCGGATCCGG

Classification:

DNA

Authors:

Hall, J.P., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

The effects of disubstitution on the binding of ruthenium complexes to DNA
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.23Å R work:0.218R free:0.245

NDB ID:

NA3058

PDB ID:

4QM7 

Release:

2014-10-08

Title:

Structure of bacterial polynucleotide kinase bound to GTP and pDNA

Classification:

TRANSFERASE/DNA

Authors:

Das, U., Wang, L.K., Smith, P., Munir, A., Shuman, S.

Citation:

Structures of bacterial polynucleotide kinase in a Michaelis complex with NTPMg2+ and 5'-OH RNA and a mixed substrate-product complex with NTPMg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.162R free:0.188