A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2016 number of released structures: 8217
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5518  Download results as an excel file       Gallery view

NDB ID:

5BNH

PDB ID:

5BNH 

Release:

2016-05-25

Title:

Crystal structure of the HLTF HIRAN domain with a ssDNA fragment

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Neculai, D., Walker, J.R., Weigelt, J., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Dhe-Paganon, S.

Citation:

Co-crystal structure of the HLTF HIRAN domain with a ssDNA fragment
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.164R free:0.213

NDB ID:

5IWI

PDB ID:

5IWI 

Release:

2016-05-25

Title:

1.98A structure of GSK945237 with S.aureus DNA gyrase and singly nicked DNA

Classification:

ISOMERASE

Authors:

Miles, T.J., Hennessy, A.J., Bax, B., Brooks, G., Brown, B.S., Brown, P., Cailleau, N., Chen, D., Dabbs, S., Davies, D.T., Esken, J.M., Giordano, I., Hoover, J.L., Jones, G.E., Kusalakumari Sukmar, S.K., Markwell, R.E., Minthorn, E.A., Rittenhouse, S., Gwynn, M.N., Pearson, N.D.

Citation:

Novel tricyclics (e.g., GSK945237) as potent inhibitors of bacterial type IIA topoisomerases.
Bioorg.Med.Chem.Lett. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.165R free:0.201

NDB ID:

5IWM

PDB ID:

5IWM 

Release:

2016-05-25

Title:

2.5A structure of GSK945237 with S.aureus DNA gyrase and DNA.

Classification:

ISOMERASE

Authors:

Miles, T.J., Hennessy, A.J., Bax, B., Brooks, G., Brown, B.S., Brown, P., Cailleau, N., Chen, D., Dabbs, S., Davies, D.T., Esken, J.M., Giordano, I., Hoover, J.L., Jones, G.E., Kusalakumari Sukmar, S.K., Markwell, R.E., Minthorn, E.A., Rittenhouse, S., Gwynn, M.N., Pearson, N.D.

Citation:

Novel tricyclics (e.g., GSK945237) as potent inhibitors of bacterial type IIA topoisomerases.
Bioorg.Med.Chem.Lett. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.18R free:0.224

NDB ID:

5ET9

PDB ID:

5ET9 

Release:

2016-05-18

Title:

Racemic crystal structures of Pribnow box consensus promoter sequence (P21/n)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Srivastava, S.C., Kauffmann, B., Huc, I.

Citation:

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.83Å R work:0.297R free:0.329

NDB ID:

5EWB

PDB ID:

5EWB 

Release:

2016-05-18

Title:

Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Srivastava, S.C., Kauffmann, B., Huc, I.

Citation:

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.694Å R work:0.298R free:0.349

NDB ID:

5EYQ

PDB ID:

5EYQ 

Release:

2016-05-18

Title:

Racemic crystal structures of Pribnow box consensus promoter sequence (Pnna)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Srivastava, S.C., Kauffmann, B., Huc, I.

Citation:

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.271R free:0.357

NDB ID:

5EZF

PDB ID:

5EZF 

Release:

2016-05-18

Title:

Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Srivastava, S.C., Kauffmann, B., Huc, I.

Citation:

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.296R free:0.316

NDB ID:

5F26

PDB ID:

5F26 

Release:

2016-05-18

Title:

Crystal structures of Pribnow box consensus promoter sequence (P63)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Srivastava, S.C., Kauffmann, B., Huc, I.

Citation:

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.288R free:0.298

NDB ID:

5J0E

PDB ID:

5J0E 

Release:

2016-05-18

Title:

Crystal structures of Pribnow box consensus promoter sequence (P32)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Srivastava, S.C., Kauffmann, B., Huc, I.

Citation:

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.81Å R work:0.225R free:0.248

NDB ID:

5J4D

PDB ID:

5J4D 

Release:

2016-05-18

Title:

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Classification:

RIBOSOME

Authors:

Svidritskiy, E., Madireddy, R., Korostelev, A.A.

Citation:

Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.221R free:0.256

NDB ID:

5A0W

PDB ID:

5A0W 

Release:

2016-05-11

Title:

THE CRYSTAL STRUCTURE OF I-DMOI E117A IN COMPLEX WITH ITS TARGET DNA AND IN THE PRESENCE OF 2MM MN

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Besker, N., Prieto, J., Montoya, G., D'Abramo, M.

Citation:

Structural and Dynamical Characterization of the I- Dmo Catalytic Activity
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.17R free:0.207

NDB ID:

5C51

PDB ID:

5C51 

Release:

2016-05-11

Title:

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Classification:

transferase/dna

Authors:

Sohl, C.D., Szymanski, M.R., Mislak, A.C., Shumate, C.K., Amiralaei, S., Schinazi, R.F., Anderson, K.S., Yin, Y.W.

Citation:

Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma.
Proc.Natl.Acad.Sci.USA 112 pp.8596 - 8601 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.426Å R work:0.314R free:0.344

NDB ID:

5C52

PDB ID:

5C52 

Release:

2016-05-11

Title:

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Classification:

transferase/DNA

Authors:

Sohl, C.D., Szymanski, M.R., Mislak, A.C., Shumate, C.K., Amiralaei, S., Schinazi, R.F., Anderson, K.S., Yin, Y.W.

Citation:

Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma.
Proc.Natl.Acad.Sci.USA 112 pp.8596 - 8601 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.637Å R work:0.311R free:0.313

NDB ID:

4Z4B

PDB ID:

4Z4B 

Release:

2016-05-04

Title:

2-Pyridyl Hoechst - a New Generation DNA-Binding Radioprotector

Classification:

DNA

Authors:

Wee, J.-Y., Dobson, R.C.J., White, J.M.

Citation:

2-Pyridyl Hoechst - a New Generation DNA-Binding Radioprotector
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9652Å R work:0.168R free:0.21

NDB ID:

5A0M

PDB ID:

5A0M 

Release:

2016-05-04

Title:

THE CRYSTAL STRUCTURE OF I-SCEI IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF MN

Classification:

HYDROLASE/DNA

Authors:

Prieto, J., Redondo, P., Merino, N., Villate, M., Blanco, F.J., Molina, R.

Citation:

Structure of the Homing Endonuclease I-Scei Complexed with its Target Dnaq in the Presence of Catalytic Metals: Ion Analysis Discrimination from Anomalous Data to Probe the Catalytic Mechanism
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.186R free:0.248

NDB ID:

5B43

PDB ID:

5B43 

Release:

2016-05-04

Title:

Crystal structure of Acidaminococcus sp. Cpf1 in complex with crRNA and target DNA

Classification:

HYDROLASE/RNA/DNA

Authors:

Yamano, T., Nishimasu, H., Zetsche, B., Hirano, H., Slaymaker, I.M., Li, Y., Fedorova, I., Nakane, T., Makarova, K.S., Koonin, E.V., Ishitani, R., Zhang, F., Nureki, O.

Citation:

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA
Cell 165 pp.949 - 962 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.22R free:0.257

NDB ID:

5I44

PDB ID:

5I44 

Release:

2016-05-04

Title:

Structure of RacA-DNA complex; P21 form

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Schumacher, M.A., Lee, J., Zeng, W.

Citation:

Molecular insights into DNA binding and anchoring by the Bacillus subtilis sporulation kinetochore-like RacA protein.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.621Å R work:0.239R free:0.268

NDB ID:

5J37

PDB ID:

5J37 

Release:

2016-05-04

Title:

Crystal structure of 60-mer BFDV Capsid Protein in complex with single stranded DNA

Classification:

VIRUS/DNA

Authors:

Sarker, S., Raidal, S., Aragao, D., Forwood, J.K.

Citation:

Crystal structure of decameric BFDV Capsid Protein
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.173R free:0.196

NDB ID:

4XQQ

PDB ID:

4XQQ 

Release:

2016-04-27

Title:

Crystal structure of AgrA LytTR domain in complex with promoters

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gopal, B., Rajasree, K.

Citation:

Conformational features of the Staphylococcus aureus AgrA-promoter interactions rationalize quorum-sensing triggered gene expression
Biochem Biophys Rep pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.261R free:0.305

NDB ID:

5ED4

PDB ID:

5ED4 

Release:

2016-04-27

Title:

Structure of a PhoP-DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

He, X., Wang, L., Wang, S.

Citation:

Structural basis of DNA sequence recognition by the response regulator PhoP in Mycobacterium tuberculosis.
Sci Rep 6 pp.24442 - 24442 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.182R free:0.226

NDB ID:

5HR4

PDB ID:

5HR4 

Release:

2016-04-27

Title:

Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities

Classification:

Hydrolase/DNA

Authors:

Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D., Aggarwal, A.K.

Citation:

Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.
Plos Biol. 14 pp.e1002442 - e1002442 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5964Å R work:0.215R free:0.241

NDB ID:

5INK

PDB ID:

5INK 

Release:

2016-04-27

Title:

Mouse Tdp2 reaction product (5'-phosphorylated DNA)-abasic/THF-Mg2+ complex

Classification:

hydrolase/dna

Authors:

Schellenberg, M.J., Perera, L., Strom, C.N., Waters, C.A., Monian, B., Appel, C.D., Vilas, C.K., Williams, J.G., Ramsden, D.A., Williams, R.S.

Citation:

Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res. 44 pp.3829 - 3844 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.164R free:0.201

NDB ID:

5INL

PDB ID:

5INL 

Release:

2016-04-27

Title:

Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex with deoxyadenosine

Classification:

hydrolase/dna

Authors:

Schellenberg, M.J., Perera, L., Strom, C.N., Waters, C.A., Monian, B., Appel, C.D., Vilas, C.K., Williams, J.G., Ramsden, D.A., Williams, R.S.

Citation:

Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res. 44 pp.3829 - 3844 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.551Å R work:0.129R free:0.168

NDB ID:

5INO

PDB ID:

5INO 

Release:

2016-04-27

Title:

Human Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex

Classification:

hydrolase/dna

Authors:

Schellenberg, M.J., Perera, L., Strom, C.N., Waters, C.A., Monian, B., Appel, C.D., Vilas, C.K., Williams, J.G., Ramsden, D.A., Williams, R.S.

Citation:

Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res. 44 pp.3829 - 3844 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.205Å R work:0.213R free:0.263

NDB ID:

5INP

PDB ID:

5INP 

Release:

2016-04-27

Title:

Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mn2+ complex

Classification:

hydrolase/dna

Authors:

Schellenberg, M.J., Perera, L., Strom, C.N., Waters, C.A., Monian, B., Appel, C.D., Vilas, C.K., Williams, J.G., Ramsden, D.A., Williams, R.S.

Citation:

Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res. 44 pp.3829 - 3844 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.947Å R work:0.142R free:0.169

NDB ID:

5INQ

PDB ID:

5INQ 

Release:

2016-04-27

Title:

Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Ca2+ complex

Classification:

hydrolase/dna

Authors:

Schellenberg, M.J., Perera, L., Strom, C.N., Waters, C.A., Monian, B., Appel, C.D., Vilas, C.K., Williams, J.G., Ramsden, D.A., Williams, R.S.

Citation:

Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res. 44 pp.3829 - 3844 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.848Å R work:0.157R free:0.194

NDB ID:

4ZM0

PDB ID:

4ZM0 

Release:

2016-04-20

Title:

Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat

Classification:

TRANSCRIPTION

Authors:

Garcia-Pino, A., De Gieter, S., Talavera, A., De Greve, H., Efremov, R.G., Loris, R.

Citation:

An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.17Å R work:0.222R free:0.246

NDB ID:

4ZM2

PDB ID:

4ZM2 

Release:

2016-04-20

Title:

Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat in a monoclinic space group

Classification:

TRANSCRIPTION

Authors:

Garcia-Pino, A., De Gieter, S., Talavera, A., De Greve, H., Efremov, R.G., Loris, R.

Citation:

An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.88Å R work:0.261R free:0.27

NDB ID:

5FW1

PDB ID:

5FW1 

Release:

2016-04-20

Title:

Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA

Classification:

HYDROLASE/DNA

Authors:

Anders, C., Bargsten, K., Jinek, M.

Citation:

Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell 61 pp.895 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.499Å R work:0.218R free:0.254

NDB ID:

5J3E

PDB ID:

5J3E 

Release:

2016-04-20

Title:

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA

Classification:

NUCLEAR PROTEIN/DNA

Authors:

Halabelian, L., Tempel, W., Li, Y., Bountra, C., Edwards, A.M., Arrowsmith, C.H.

Citation:

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.208R free:0.248

NDB ID:

4Z6C

PDB ID:

4Z6C 

Release:

2016-04-13

Title:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable CTP

Classification:

TRANSFERASE/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable CTP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.677Å R work:0.2R free:0.272

NDB ID:

4Z6D

PDB ID:

4Z6D 

Release:

2016-04-13

Title:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP

Classification:

TRANSFERASE/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.51Å R work:0.197R free:0.269

NDB ID:

4Z6E

PDB ID:

4Z6E 

Release:

2016-04-13

Title:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE

Classification:

TRANSFERASE/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.752Å R work:0.177R free:0.248

NDB ID:

4Z6F

PDB ID:

4Z6F 

Release:

2016-04-13

Title:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE

Classification:

TRANSFERASE/DNA

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.444Å R work:0.194R free:0.248

NDB ID:

4Z7K

PDB ID:

4Z7K 

Release:

2016-04-13

Title:

Crystal structure of CRISPR RNA processing endoribonuclease Cas6b

Classification:

Hydrolase/RNA/DNA

Authors:

Li, H., Shao, Y., Richter, H., Randau, L.

Citation:

Dual binding-mediated CRISPR RNA Processing by Cas6b
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.223R free:0.278

NDB ID:

5EIX

PDB ID:

5EIX 

Release:

2016-04-13

Title:

QUINOLONE-STABILIZED CLEAVAGE COMPLEX OF TOPOISOMERASE IV FROM KLEBSIELLA PNEUMONIAE

Classification:

ISOMERASE/DNA

Authors:

Veselkov, D.A., Laponogov, I., Pan, X.S., Selvarajah, J., Skamrova, G.B., Branstrom, A., Narasimhan, J., Prasad, J.V., Fisher, L.M., Sanderson, M.R.

Citation:

Structure of a quinolone-stabilized cleavage complex of topoisomerase IV from Klebsiella pneumoniae and comparison with a related Streptococcus pneumoniae complex.
Acta Crystallogr D Struct Biol 72 pp.488 - 496 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.224R free:0.259

NDB ID:

5EYB

PDB ID:

5EYB 

Release:

2016-04-13

Title:

X-ray Structure of Reb1-Ter Complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Jaiswal, R., Choudhury, M., Zaman, S., Singh, S., Santosh, V., Bastia, D., Escalante, C.R.

Citation:

Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe.
Proc.Natl.Acad.Sci.USA 113 pp.E2267 - E2276 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.243

NDB ID:

5HAW

PDB ID:

5HAW 

Release:

2016-04-13

Title:

structures of the NO factor SlmA bound to DNA and the cytoskeletal cell division protein FtsZ

Classification:

CELL CYCLE/DNA

Authors:

Schumacher, M.A., Zeng, W.

Citation:

Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ.
Proc.Natl.Acad.Sci.USA 113 pp.4988 - 4993 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.89Å R work:0.192R free:0.219

NDB ID:

5HBU

PDB ID:

5HBU 

Release:

2016-04-13

Title:

Structure of the E. coli nucleoid occlusion protein SlmA bound to DNA and the C-terminal tail of the cytoskeletal cell division protein FtsZ

Classification:

CELL CYCLE/DNA

Authors:

Schumacher, M.A., Zeng, W.

Citation:

Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ.
Proc.Natl.Acad.Sci.USA 113 pp.4988 - 4993 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.226R free:0.269

NDB ID:

5IUD

PDB ID:

5IUD 

Release:

2016-04-13

Title:

Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer

Classification:

Transferase/DNA

Authors:

Coloma, J., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

Citation:

Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer.
Sci Rep 6 pp.23784 - 23784 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.183R free:0.228

NDB ID:

4XQJ

PDB ID:

4XQJ 

Release:

2016-04-06

Title:

Crystal structure of AgrA LytTR domain in complex with promoters

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gopal, B., Rajasree, K.

Citation:

Conformational features of the Staphylococcus aureus AgrA-promoter interactions rationalize quorum-sensing triggered gene expression
Biochem Biophys Rep pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.187R free:0.224

NDB ID:

4XQN

PDB ID:

4XQN 

Release:

2016-04-06

Title:

Crystal structure of AgrA LytTR domain in complex with promoters

Classification:

DNA/DNA BINDING PROTEIN

Authors:

Gopal, B., Rajasree, K.

Citation:

Conformational features of the Staphylococcus aureus AgrA-promoter interactions rationalize quorum-sensing triggered gene expression
Biochem Biophys Rep pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.211R free:0.247

NDB ID:

4XXE

PDB ID:

4XXE 

Release:

2016-04-06

Title:

Structure of AgrA LytTR domain in complex with promoters

Classification:

TRANSCRIPTION/DNA

Authors:

Gopal, B., Rajasree, K.

Citation:

Conformational features of the Staphylococcus aureus AgrA-promoter interactions rationalize quorum-sensing triggered gene expression
Biochem Biophys Rep pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.314R free:0.355

NDB ID:

4XYQ

PDB ID:

4XYQ 

Release:

2016-04-06

Title:

Structure of AgrA LytTR domain in complex with promoters

Classification:

DNA/DNA BINDING PROTEIN

Authors:

Gopal, B., Rajasree, K.

Citation:

Conformational features of the Staphylococcus aureus AgrA-promoter interactions rationalize quorum-sensing triggered gene expression
Biochem Biophys Rep pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.2R free:0.237

NDB ID:

5AY8

PDB ID:

5AY8 

Release:

2016-04-06

Title:

Crystal structure of human nucleosome containing H3.Y

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y., Kurumizaka, H.

Citation:

Structure and function of human histone H3.Y nucleosome
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.201R free:0.248

NDB ID:

5CLV

PDB ID:

5CLV 

Release:

2016-04-06

Title:

Crystal Structure of KorA-operator DNA complex (KorA-OA)

Classification:

TRANSCRIPTION

Authors:

Rajasekar, K.V., Lovering, A.L., Dancea, F., Scott, D.J., Harris, S.A., Bingle, L.E., Roessle, M., Thomas, C.M., Hyde, E.I., White, S.A.

Citation:

Flexibility of KorA, a plasmid-encoded, global transcription regulator, in the presence and the absence of its operator.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.279R free:0.292

NDB ID:

5CM3

PDB ID:

5CM3 

Release:

2016-04-06

Title:

Crystal Structure of KorA, a plasmid-encoded, global transcription regulator

Classification:

TRANSCRIPTION

Authors:

Rajasekar, K.V., Lovering, A.L., Dancea, F., Scott, D.J., Harris, S.A., Bingle, L.E., Roessle, M., Thomas, C.M., Hyde, E.I., White, S.A.

Citation:

Flexibility of KorA, a plasmid-encoded, global transcription regulator, in the presence and the absence of its operator.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.302Å R work:0.193R free:0.233

NDB ID:

5CR2

PDB ID:

5CR2 

Release:

2016-04-06

Title:

E. coli MazF in complex with single strand DNA substrate analog

Classification:

HYDROLASE

Authors:

Zorzini, V., Mernik, A., Lah, J., Sterckx, Y.G., De Jonge, N., Garcia-Pino, A., De Greve, H., Versees, W., Loris, R.

Citation:

Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.223R free:0.29

NDB ID:

5HRT

PDB ID:

5HRT 

Release:

2016-04-06

Title:

Crystal structure of mouse autotaxin in complex with a DNA aptamer

Classification:

HYDROLASE

Authors:

Kato, K., Ikeda, H., Miyakawa, S., Futakawa, S., Nonaka, Y., Fujiwara, M., Okudaira, S., Kano, K., Aoki, J., Morita, J., Ishitani, R., Nishimasu, H., Nakamura, Y., Nureki, O.

Citation:

Structural basis for specific inhibition of Autotaxin by a DNA aptamer
Nat.Struct.Mol.Biol. 23 pp.395 - 401 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.997Å R work:0.163R free:0.201

NDB ID:

4Z1Z

PDB ID:

4Z1Z 

Release:

2016-03-30

Title:

Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTCT Central Four

Classification:

hydrolase/dna

Authors:

Lambert, A.R., Hallinan, J.P., Shen, B.W., Chik, J.K., Bolduc, J.M., Kulshina, N., Robins, L.I., Kaiser, B.K., Jarjour, J., Havens, K., Scharenberg, A.M., Stoddard, B.L.

Citation:

Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
Structure pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.237R free:0.286