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As of 30-Nov-2016 number of released structures: 8621
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5810  Download results as an excel file       Gallery view

NDB ID:

5EW1

PDB ID:

5EW1 

Release:

2016-11-30

Title:

Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT3

Classification:

protein/dna

Authors:

Pica, A., Russo Krauss, I., Nagatoishi, S., Sugimoto, N., Sica, F.

Citation:

Human thrombin sandwiched between two DNA aptamers
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.155R free:0.208

NDB ID:

5EW2

PDB ID:

5EW2 

Release:

2016-11-30

Title:

Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT12

Classification:

protein/dna

Authors:

Pica, A., Russo Krauss, I., Nagatoishi, S., Sugimoto, N., Sica, F.

Citation:

Human thrombin sandwiched between two DNA aptamers
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.59Å R work:0.208R free:0.267

NDB ID:

5T3L

PDB ID:

5T3L 

Release:

2016-11-30

Title:

B-DNA (CGCGAATTCGCG)2 soaked with selenourea for 1 min

Classification:

DNA

Authors:

Luo, Z.

Citation:

Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures.
Sci Rep 6 pp.37123 - 37123 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.58Å R work:0.148R free:0.186

NDB ID:

5EOZ

PDB ID:

5EOZ 

Release:

2016-11-23

Title:

Mutagenicity of 7-Benzyl guanine lesion and Replication by Human DNA Polymerase beta

Classification:

transferase/dna

Authors:

Koag, M.C., Lee, S.

Citation:

Mutagenicity of 7-Benzyl guanine lesion and Replication by Human DNA Polymerase beta
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.088Å R work:0.183R free:0.238

NDB ID:

5ET2

PDB ID:

5ET2 

Release:

2016-11-23

Title:

Lambda-Ru(TAP)2(dppz)]2+ bound to d(TTGGCGCCAA)

Classification:

DNA

Authors:

Keane, P.M., Hall, J.P., Poynton, F.E., Gurung, S.P., Clark, I.P., Sazanovich, I.V., Towrie, M., Gunnlaugsson, T., Brazier, J.A., Quinn, S.J., Cardin, C.J., Kelly, J.M.

Citation:

Unexpected enhancement of sensitised photo-oxidation by a Ru(II) complex on replacement of guanine with inosine in DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.39Å R work:0.166R free:0.185

NDB ID:

5FMP

PDB ID:

5FMP 

Release:

2016-11-23

Title:

KstR, transcriptional repressor of cholesterol degradation in Mycobacterium tuberculosis, bound to the DNA operator

Classification:

DNA BINDING PROTEIN

Authors:

Podust, L.M., Ouellet, H.

Citation:

Kstr, Transcriptional Repressor of Cholesterol Degradation in Mycobacterium Tuberculosis
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.26Å R work:0.201R free:0.27

NDB ID:

5GKP

PDB ID:

5GKP 

Release:

2016-11-23

Title:

Crystal structure of the EndoG worm homologue CPS-6 H148A/F122A in complex with DNA

Classification:

HYDROLASE/DNA

Authors:

Lin, J.L., Wu, C.C., Yang, W.Z., Yuan, H.S.

Citation:

Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.173R free:0.252

NDB ID:

5IFF

PDB ID:

5IFF 

Release:

2016-11-23

Title:

Crystal structure of R.PabI-nonspecific DNA complex

Classification:

HYDROLASE/DNA

Authors:

Wang, D., Miyazono, K.I., Tanokura, M.

Citation:

Tetrameric structure of the restriction DNA glycosylase R.PabI in complex with nonspecific double-stranded DNA.
Sci Rep 6 pp.35197 - 35197 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.206R free:0.248

NDB ID:

5L2X

PDB ID:

5L2X 

Release:

2016-11-23

Title:

Crystal structure of human PrimPol ternary complex

Classification:

TRANSFERASE/DNA

Authors:

Rechkoblit, O., Gupta, Y.K., Malik, R., Rajashankar, K.R., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

Citation:

Structure and mechanism of human PrimPol, a DNA polymerase with primase activity.
Sci Adv 2 pp.e1601317 - e1601317 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.205R free:0.254

NDB ID:

5TRD

PDB ID:

5TRD 

Release:

2016-11-23

Title:

Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator

Classification:

TRANSFERASE/DNA

Authors:

Vetting, M.W., Rodionova, I.A., Li, X., Osterman, A.L., Rodionov, D.A., Almo, S.C.

Citation:

Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.174R free:0.216

NDB ID:

5ERZ

PDB ID:

5ERZ 

Release:

2016-11-16

Title:

Crystal structure of the [Ni2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex

Classification:

DNA/ANTIBIOTIC

Authors:

Tseng, W.H., Wu, P.C., Hou, M.H.

Citation:

Crystal structure of the [Ni2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.187R free:0.236

NDB ID:

5ES0

PDB ID:

5ES0 

Release:

2016-11-16

Title:

Crystal structure of the [Co2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex

Classification:

DNA/ANTIBIOTIC

Authors:

Tseng, W.H., Wu, P.C., Hou, M.H.

Citation:

Crystal structure of the [Co2+-(chromomycin A3)2]-d(TTCCGCCGCCGAA)2 complex
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.2R free:0.258

NDB ID:

5J3F

PDB ID:

5J3F 

Release:

2016-11-16

Title:

NMR solution structure of [Rp, Rp]-PT dsDNA

Classification:

DNA

Authors:

Lan, W., Hu, Z., Shen, J., Wang, C., Jiang, F., Liu, H., Long, D., Liu, M., Cao, C.

Citation:

Structural investigation into physiological DNA phosphorothioate modification
Sci Rep 6 pp.25737 - 25737 2016

Experiment:

SOLUTION NMR

NDB ID:

5J3I

PDB ID:

5J3I 

Release:

2016-11-16

Title:

NMR solution structure of [Sp, Sp]-PT dsDNA

Classification:

DNA

Authors:

Lan, W., Hu, Z., Shen, J., Wang, C., Jiang, F., Liu, H., Long, D., Liu, M., Cao, C.

Citation:

Structural investigation into physiological DNA phosphorothioate modification
Sci Rep 6 pp.25737 - 25737 2016

Experiment:

SOLUTION NMR

NDB ID:

5JU4

PDB ID:

5JU4 

Release:

2016-11-16

Title:

Crystal structure of a DNA sequence d(CGTGAATTCACG) at 130K

Classification:

DNA

Authors:

Sbirkova, H.I., Schivachev, B.L.

Citation:

Crystal structure of a DNA sequence d(CGTGAATTCACG) at 130K
Bul.Chem.Commn. 48 pp.589 - 593 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.218R free:0.292

NDB ID:

5EDN

PDB ID:

5EDN 

Release:

2016-11-09

Title:

Structure of HOXB13-DNA(TCG) complex

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.

Citation:

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.216R free:0.281

NDB ID:

5EG0

PDB ID:

5EG0 

Release:

2016-11-09

Title:

HOXB13-MEIS1 heterodimer bound to DNA

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.

Citation:

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.101Å R work:0.285R free:0.322

NDB ID:

5EGO

PDB ID:

5EGO 

Release:

2016-11-09

Title:

HOXB13-MEIS1 heterodimer bound to methylated DNA

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.

Citation:

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.54Å R work:0.227R free:0.264

NDB ID:

5F8A

PDB ID:

5F8A 

Release:

2016-11-09

Title:

Crystal structure of the ternary EcoRV-DNA-Lu complex with uncleaved DNA substrate. Lanthanide binding to EcoRV-DNA complex inhibits cleavage.

Classification:

HYDROLASE/DNA

Authors:

Sinha, K., Sangani, S.S., Kehr, A.D., Rule, G.S., Jen-Jacobson, L.

Citation:

Metal Ion Binding at the Catalytic Site Induces Widely Distributed Changes in a Sequence Specific Protein-DNA Complex.
Biochemistry pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.76Å R work:0.16R free:0.199

NDB ID:

5HLK

PDB ID:

5HLK 

Release:

2016-11-09

Title:

Crystal structure of the ternary EcoRV-DNA-Lu complex with cleaved DNA substrate.

Classification:

HYDROLASE/DNA

Authors:

Sinha, K., Sangani, S.S., Kehr, A.D., Rule, G.S., Jen-Jacobson, L.

Citation:

Metal Ion Binding at the Catalytic Site Induces Widely Distributed Changes in a Sequence Specific Protein-DNA Complex.
Biochemistry pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.165R free:0.228

NDB ID:

5JZQ

PDB ID:

5JZQ 

Release:

2016-11-09

Title:

Ultrahigh-resolution centrosymmetric crystal structure of Z-DNA reveals massive presence of multiple conformations

Classification:

DNA

Authors:

Drozdzal, P., Gilski, M., Jaskolski, M.

Citation:

Ultrahigh-resolution centrosymmetric crystal structure of Z-DNA reveals the massive presence of alternate conformations
Acta Crystallogr.,Sect.D 72 pp.1203 - 1211 2016

Experiment:

X-RAY DIFFRACTION Resolution:0.78Å R work:0.138R free:0.142

NDB ID:

5KRB

PDB ID:

5KRB 

Release:

2016-11-09

Title:

GCNF DNA Binding Domain - Oct4 DR0 Complex

Classification:

transcription/dna

Authors:

Weikum, E.A., Tuntland, M.L., Murphy, M.N., Ortlund, E.A.

Citation:

A structural investigation into Oct4 regulation by orphan nuclear receptors, Germ Cell Nuclear Factor (GCNF) and Liver Receptor Homolog-1 (LRH-1)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.101Å R work:0.215R free:0.268

NDB ID:

5L0M

PDB ID:

5L0M 

Release:

2016-11-09

Title:

hLRH-1 DNA Binding Domain - 12bp Oct4 promoter complex

Classification:

Transcription/dna

Authors:

Weikum, E.R., Tuntland, M.L., Murphy, M.N., Ortlund, E.A.

Citation:

A structural investigation into Oct4 regulation by orphan nuclear receptors, Germ Cell Nuclear Factor (GCNF) and Liver Receptor Homolog-1 (LRH-1)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.197Å R work:0.153R free:0.196

NDB ID:

5SY7

PDB ID:

5SY7 

Release:

2016-11-09

Title:

Crystal Structure of the Heterodimeric NPAS3-ARNT Complex with HRE DNA

Classification:

transcription/DNA

Authors:

Wu, D., Su, X., Potluri, N., Kim, Y., Rastinejad, F.

Citation:

NPAS1-ARNT and NPAS3-ARNT crystal structures implicate the bHLH-PAS family as multi-ligand binding transcription factors.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.2Å R work:0.271R free:0.361

NDB ID:

5T2W

PDB ID:

5T2W 

Release:

2016-11-09

Title:

Structure of thymine DNA glycosylase bound to substrate analog 2'-F-5-formyl-dC

Classification:

HYDROLASE/DNA

Authors:

Pidugu, L.S., Flowers, J.W., Coey, C.T., Pozharski, E., Greenberg, M.M., Drohat, A.C.

Citation:

Structural Basis for Excision of 5-Formylcytosine by Thymine DNA Glycosylase.
Biochemistry pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.18R free:0.225

NDB ID:

5EDW

PDB ID:

5EDW 

Release:

2016-11-02

Title:

Ternary structure of Dpo4 bound to G in the template base paired with incoming dTTP

Classification:

transferase/dna

Authors:

Koag, M.-C., Lee, S.

Citation:

Structure of Dpo4 DNA polymerase replicating across the genotoxic N7-methylguanine lesion
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.62Å R work:0.219R free:0.284

NDB ID:

5GKE

PDB ID:

5GKE 

Release:

2016-11-02

Title:

Structure of EndoMS-dsDNA1 complex

Classification:

HYDROLASE/DNA

Authors:

Nakae, S., Hijikata, A., Tsuji, T., Yonezawa, K., Kouyama, K.I., Mayanagi, K., Ishino, S., Ishino, Y., Shirai, T.

Citation:

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease
Structure 24 pp.1960 - 1971 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.189R free:0.244

NDB ID:

5GKF

PDB ID:

5GKF 

Release:

2016-11-02

Title:

Structure of EndoMS-dsDNA1' complex

Classification:

HYDROLASE/DNA

Authors:

Nakae, S., Hijikata, A., Tsuji, T., Yonezawa, K., Kouyama, K.I., Mayanagi, K., Ishino, S., Ishino, Y., Shirai, T.

Citation:

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease
Structure 24 pp.1960 - 1971 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.171R free:0.246

NDB ID:

5GKG

PDB ID:

5GKG 

Release:

2016-11-02

Title:

Structure of EndoMS-dsDNA1'' complex

Classification:

HYDROLASE/DNA

Authors:

Nakae, S., Hijikata, A., Tsuji, T., Yonezawa, K., Kouyama, K.I., Mayanagi, K., Ishino, S., Ishino, Y., Shirai, T.

Citation:

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease
Structure 24 pp.1960 - 1971 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.167R free:0.231

NDB ID:

5GKH

PDB ID:

5GKH 

Release:

2016-11-02

Title:

Structure of EndoMS-dsDNA2 complex

Classification:

HYDROLASE/DNA

Authors:

Nakae, S., Hijikata, A., Tsuji, T., Yonezawa, K., Kouyama, K.I., Mayanagi, K., Ishino, S., Ishino, Y., Shirai, T.

Citation:

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease
Structure 24 pp.1960 - 1971 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.17R free:0.226

NDB ID:

5GKI

PDB ID:

5GKI 

Release:

2016-11-02

Title:

Structure of EndoMS-dsDNA3 complex

Classification:

HYDROLASE/DNA

Authors:

Nakae, S., Hijikata, A., Tsuji, T., Yonezawa, K., Kouyama, K.I., Mayanagi, K., Ishino, S., Ishino, Y., Shirai, T.

Citation:

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease
Structure 24 pp.1960 - 1971 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.181R free:0.254

NDB ID:

5HIX

PDB ID:

5HIX 

Release:

2016-11-02

Title:

Cocrystal structure of an anti-parallel DNA G-quadruplex and a tetra-Quinoline Foldamer

Classification:

DNA

Authors:

Mandal, P.K., Baptiste, B., Langlois d'Estaintot, B., Kauffmann, B., Huc, I.

Citation:

Multivalent Interactions between an Aromatic Helical Foldamer and a DNA G-Quadruplex in the Solid State.
Chembiochem 17 pp.1911 - 1914 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.48Å R work:0.226R free:0.287

NDB ID:

5EEA

PDB ID:

5EEA 

Release:

2016-10-26

Title:

Structure of HOXB13-DNA(CAA) complex

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.

Citation:

Molecular basis of recognition of two distinct DNA sequences by a single transcription factor
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.195Å R work:0.25R free:0.296

NDB ID:

5I50

PDB ID:

5I50 

Release:

2016-10-26

Title:

Structure of OmoMYC bound to double-stranded DNA

Classification:

TRANSCRIPTION

Authors:

Jung, L.A., Gebhardt, A., Koelmel, W., Ade, C.P., Walz, S., Kuper, J., von Eyss, B., Letschert, S., Redel, C., d'Artista, L., Biankin, A., Zender, L., Sauer, M., Wolf, E., Evan, G., Kisker, C., Eilers, M.

Citation:

OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors.
Oncogene pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.701Å R work:0.226R free:0.279

NDB ID:

5J0O

PDB ID:

5J0O 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with A:A mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.209R free:0.263

NDB ID:

5J0P

PDB ID:

5J0P 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.248R free:0.319

NDB ID:

5J0Q

PDB ID:

5J0Q 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with A:G mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.206R free:0.261

NDB ID:

5J0R

PDB ID:

5J0R 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with C:A mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.001Å R work:0.208R free:0.272

NDB ID:

5J0S

PDB ID:

5J0S 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with C:T mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.198R free:0.245

NDB ID:

5J0T

PDB ID:

5J0T 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with G:A mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.201R free:0.258

NDB ID:

5J0U

PDB ID:

5J0U 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.204R free:0.281

NDB ID:

5J0V

PDB ID:

5J0V 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with G:T mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.204R free:0.281

NDB ID:

5J0W

PDB ID:

5J0W 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with T:C mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.234R free:0.306

NDB ID:

5J0X

PDB ID:

5J0X 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with T:G mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.193R free:0.241

NDB ID:

5J0Y

PDB ID:

5J0Y 

Release:

2016-10-26

Title:

Binary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.188R free:0.244

NDB ID:

5J29

PDB ID:

5J29 

Release:

2016-10-26

Title:

Ternary complex crystal structure of DNA polymerase Beta with A:A mismatch at the primer terminus

Classification:

TRANSFERASE/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.211R free:0.282

NDB ID:

5J2A

PDB ID:

5J2A 

Release:

2016-10-26

Title:

Ternary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus

Classification:

Transferase/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.224R free:0.295

NDB ID:

5J2B

PDB ID:

5J2B 

Release:

2016-10-26

Title:

Ternary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus

Classification:

Transferase/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.209R free:0.287

NDB ID:

5J2C

PDB ID:

5J2C 

Release:

2016-10-26

Title:

Ternary complex crystal structure of DNA polymerase Beta with C:A mismatch at the primer terminus

Classification:

Transferase/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.211R free:0.265

NDB ID:

5J2D

PDB ID:

5J2D 

Release:

2016-10-26

Title:

Ternary complex crystal structure of DNA polymerase Beta with C:C mismatch at the primer terminus

Classification:

Transferase/DNA

Authors:

Batra, V.K., Beard, W.A., Pedersen, L.C., Wilson, S.H.

Citation:

Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure 24 pp.1863 - 1875 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.2R free:0.255