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As of 19-Nov-2014 number of released structures: 7575
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 4870   (Gallery view)

NDB ID:

2MKM

PDB ID:

2MKM 

Release:

2014-11-19

Title:

G-triplex structure and formation propensity

Classification:

DNA

Authors:

Cerofolini, L., Amato, J., Giachetti, A., Limongelli, V., Novellino, E., Parrinello, M., Fragai, M., Randazzo, A., Luchinat, C.

Citation:

G-triplex structure and formation propensity.
Nucleic Acids Res. pp. - 2014

Experiment:

SOLUTION NMR

NDB ID:

2MKO

PDB ID:

2MKO 

Release:

2014-11-19

Title:

G-triplex structure and formation propensity

Classification:

DNA

Authors:

Cerofolini, L., Amato, J., Giachetti, A., Limongelli, V., Novellino, E., Parrinello, M., Fragai, M., Randazzo, A., Luchinat, C.

Citation:

G-triplex structure and formation propensity.
Nucleic Acids Res. pp. - 2014

Experiment:

SOLUTION NMR

NDB ID:

NA3178

PDB ID:

4RDU 

Release:

2014-11-19

Title:

Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution

Classification:

TRANSCRIPTION/DNA

Authors:

Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)

Citation:

Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.182R free:0.225

NDB ID:

NA3145

PDB ID:

4R44 

Release:

2014-11-12

Title:

Racemic crystal structure of a tetramolecular DNA G-quadruplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.695Å R work:0.293R free:0.325

NDB ID:

NA3146

PDB ID:

4R45 

Release:

2014-11-12

Title:

Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.285R free:0.34

NDB ID:

NA3147

PDB ID:

4R47 

Release:

2014-11-12

Title:

Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.282R free:0.303

NDB ID:

NA3148

PDB ID:

4R48 

Release:

2014-11-12

Title:

Racemic crystal structure of a calcium-bound DNA four-way junction

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.33Å R work:0.285R free:0.34

NDB ID:

NA3149

PDB ID:

4R49 

Release:

2014-11-12

Title:

Racemic crystal structure of a calcium-bound B-DNA duplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.28Å R work:0.216R free:0.259

NDB ID:

NA3150

PDB ID:

4R4A 

Release:

2014-11-12

Title:

Racemic crystal structure of a cobalt-bound B-DNA duplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.49Å R work:0.208R free:0.232

NDB ID:

NA3151

PDB ID:

4R4D 

Release:

2014-11-12

Title:

Racemic crystal structure of a magnesium-bound B-DNA duplex

Classification:

DNA

Authors:

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Citation:

Racemic DNA Crystallography.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.29Å R work:0.268R free:0.311

NDB ID:

NA2740

PDB ID:

4MTD 

Release:

2014-11-05

Title:

Zinc Uptake Regulator Complexed With Zinc AND DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gilston, B.A., Wang, S., Marcus, M.D., Canalizo-Hernandez, M.A., Swindell, E.P., Xue, Y., Mondragon, A., O'Halloran, T.V.

Citation:

Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon.
Plos Biol. 12 pp.e1001987 - e1001987 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.234R free:0.271

NDB ID:

NA2741

PDB ID:

4MTE 

Release:

2014-11-05

Title:

Zinc Uptake Regulator Complexed with Zinc and DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gilston, B.A., Wang, S., Marcus, M.D., Canalizo-Hernandez, M.A., Swindell, E.P., Xue, Y., Mondragon, A., O'Halloran, T.V.

Citation:

Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon.
Plos Biol. 12 pp.e1001987 - e1001987 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.217R free:0.256

NDB ID:

NA3164

PDB ID:

4R8P 

Release:

2014-11-05

Title:

Crystal structure of the Ring1B/Bmi1/UbcH5c PRC1 ubiquitylation module bound to the nucleosome core particle

Classification:

Structural Protein/DNA

Authors:

McGinty, R.K., Henrici, R.C., Tan, S.

Citation:

Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome.
Nature 514 pp.591 - 596 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2846Å R work:0.196R free:0.245

NDB ID:

2MFU

PDB ID:

2MFU 

Release:

2014-10-29

Title:

Solution NMR structure of quadruplex d(TGGGTTTGGGTTGGGTTTGGG) in sodium conditions

Classification:

DNA

Authors:

Karsisiotis, A., Dillon, P., Webba da Silva, M.

Citation:

Solution NMR structure of quadruplex d(TGGGTTTGGGTTGGGTTTGGG) in sodium conditions
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

NA2900

PDB ID:

4OLN 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 1 in complex with estrogen response element DNA

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.174R free:0.205

NDB ID:

NA2901

PDB ID:

4OND 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 2 DBD helix mutant - ERE DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.253Å R work:0.186R free:0.215

NDB ID:

NA2906

PDB ID:

4OOR 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 2 DNA binding domain in complex with a steroid response element

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.701Å R work:0.19R free:0.232

NDB ID:

NA2935

PDB ID:

4OV7 

Release:

2014-10-29

Title:

Ancestral Steroid Receptor 2 DBD helix mutant - SRE DNA complex

Classification:

TRANSCRIPTION/DNA

Authors:

McKeown, A.N., Bridgham, J.T., Anderson, D.W., Murphy, M.N., Ortlund, E.A., Thornton, J.W.

Citation:

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.
Cell(Cambridge,Mass.) 159 pp.58 - 68 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.701Å R work:0.198R free:0.231

NDB ID:

NA3162

PDB ID:

4R89 

Release:

2014-10-29

Title:

Crystal structure of paFAN1 - 5' flap DNA complex with Manganase

Classification:

Hydrolase/DNA

Authors:

Gwon, G.H., Kim, Y.R., Liu, Y., Watson, A.T., Jo, A., Etheridge, T.J., Yuan, F., Zhang, Y., Kim, Y.C., Carr, A.M., Cho, Y.

Citation:

Crystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1
Genes Dev. 28 pp.2276 - 2290 2014

Experiment:

X-RAY DIFFRACTION Resolution:4.002Å R work:0.223R free:0.278

NDB ID:

NA3163

PDB ID:

4R8A 

Release:

2014-10-29

Title:

Crystal structure of paFAN1 - 5' flap DNA complex

Classification:

Hydrolase/DNA

Authors:

Gwon, G.H., Kim, Y.R., Liu, Y., Watson, A.T., Jo, A., Etheridge, T.J., Yuan, F., Zhang, Y., Kim, Y.C., Carr, A.M., Cho, Y.

Citation:

Crystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1
Genes Dev. 28 pp.2276 - 2290 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.233

NDB ID:

2MFT

PDB ID:

2MFT 

Release:

2014-10-22

Title:

Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions

Classification:

DNA

Authors:

Karsisiotis, A.I., Webba da Silva, M.

Citation:

Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MNX

PDB ID:

2MNX 

Release:

2014-10-08

Title:

Major groove orientation of the (2S)-N6-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene

Classification:

DNA

Authors:

Kowal, E.A., Wickramaratne, S., Kotapati, S., Turo, M., Tretyakova, N., Stone, M.P.

Citation:

Major Groove Orientation of the (2S)-N(6)-(2-Hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA Adduct Induced by 1,2-Epoxy-3-butene.
Chem.Res.Toxicol. 27 pp.1675 - 1686 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2735

PDB ID:

4MS5 

Release:

2014-10-08

Title:

Lambda-[Ru(TAP)2(dppz-11,12-(F)2)]2+ bound to CCGGATCCGG

Classification:

DNA

Authors:

Hall, J.P., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

The effects of disubstitution on the binding of ruthenium complexes to DNA
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.23Å R work:0.218R free:0.245

NDB ID:

NA3058

PDB ID:

4QM7 

Release:

2014-10-08

Title:

Structure of bacterial polynucleotide kinase bound to GTP and pDNA

Classification:

TRANSFERASE/DNA

Authors:

Das, U., Wang, L.K., Smith, P., Munir, A., Shuman, S.

Citation:

Structures of bacterial polynucleotide kinase in a Michaelis complex with NTPMg2+ and 5'-OH RNA and a mixed substrate-product complex with NTPMg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.162R free:0.188

NDB ID:

NA3129

PDB ID:

4R2A 

Release:

2014-10-08

Title:

Egr1/Zif268 zinc fingers in complex with methylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.591Å R work:0.137R free:0.188

NDB ID:

NA3130

PDB ID:

4R2C 

Release:

2014-10-08

Title:

Egr1/Zif268 zinc fingers in complex with hydroxymethylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.89Å R work:0.198R free:0.249

NDB ID:

NA3131

PDB ID:

4R2D 

Release:

2014-10-08

Title:

Egr1/Zif268 zinc fingers in complex with formylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.088Å R work:0.197R free:0.239

NDB ID:

NA3132

PDB ID:

4R2E 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with methylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.84Å R work:0.161R free:0.207

NDB ID:

NA3133

PDB ID:

4R2P 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with hydroxymethylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.788Å R work:0.178R free:0.209

NDB ID:

NA3134

PDB ID:

4R2Q 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with formylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.54Å R work:0.16R free:0.192

NDB ID:

NA3135

PDB ID:

4R2R 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with carboxylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.089Å R work:0.193R free:0.222

NDB ID:

NA3136

PDB ID:

4R2S 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. 28 pp.2304 - 2313 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.489Å R work:0.207R free:0.268

NDB ID:

NA3140

PDB ID:

4R28 

Release:

2014-10-08

Title:

MspJI Restriction Endonuclease in Complex with 27-mer Oligonucleotide

Classification:

Hydrolase/DNA

Authors:

Horton, J.R., Wang, H., Mabuchi, M.Y., Zhang, X., Roberts, R.J., Zheng, Y., Wilson, G.G., Cheng, X.

Citation:

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.
Nucleic Acids Res. 42 pp.12092 - 12101 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.055Å R work:0.226R free:0.258

NDB ID:

NA3152

PDB ID:

4R63 

Release:

2014-10-08

Title:

Binary complex crystal structure of R258A mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.179R free:0.232

NDB ID:

NA3153

PDB ID:

4R64 

Release:

2014-10-08

Title:

Binary complex crystal structure of E295K mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.189R free:0.243

NDB ID:

NA3154

PDB ID:

4R65 

Release:

2014-10-08

Title:

Ternary complex crystal structure of R258A mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.186R free:0.222

NDB ID:

NA3155

PDB ID:

4R66 

Release:

2014-10-08

Title:

Ternary complex crystal structure of E295K mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.181R free:0.247

NDB ID:

NA2613

PDB ID:

4LOX 

Release:

2014-09-24

Title:

Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA

Classification:

HYDROLASE/DNA

Authors:

Chik, J., Shen, B., Stoddard, B.

Citation:

Crystal structure of a LAGLIDADG endonuclease from the Sordaria Macrospore.
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.186R free:0.276

NDB ID:

NA2615

PDB ID:

4LTF 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity(1/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.136R free:0.157

NDB ID:

NA2616

PDB ID:

4LTG 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (2/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.18Å R work:0.089R free:0.113

NDB ID:

NA2617

PDB ID:

4LTH 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (3/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.145R free:0.174

NDB ID:

NA2618

PDB ID:

4LTI 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (4/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.41Å R work:0.131R free:0.162

NDB ID:

NA2619

PDB ID:

4LTJ 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (5/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.146R free:0.18

NDB ID:

NA2620

PDB ID:

4LTK 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (6/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.136R free:0.153

NDB ID:

NA2621

PDB ID:

4LTL 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (7/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.07Å R work:0.151R free:0.191

NDB ID:

NA2622

PDB ID:

4LY2 

Release:

2014-09-24

Title:

X-ray crystal structure of the ruthenium complex [Ru(phen)2(dppz)]2+ bound to d(TCGGTACCGA)

Classification:

DNA

Authors:

Niyazi, H, Teixeira, S, Mitchell, E, Forsyth, T, Cardin, C

Citation:

X-ray crystal structure of the ruthenium complex [Ru(phen)2(dppz)]2+ bound to d(TCGGTACCGA)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.188R free:0.218

NDB ID:

NA2663

PDB ID:

4LVI 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 4.6

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.205R free:0.247

NDB ID:

NA2664

PDB ID:

4LVJ 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 5.5

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.17Å R work:0.201R free:0.241

NDB ID:

NA2678

PDB ID:

4LVK 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.37Å R work:0.2R free:0.249

NDB ID:

NA2680

PDB ID:

4LVL 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Thiophosphate). Mn-bound crystal structure at pH 6.8

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.186R free:0.237