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As of 18-Nov-2020 number of released structures: 11059
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7496  Download results as an excel file       Gallery view

NDB ID:

 6LB3

PDB ID:

6LB3 

Release:

2020-11-18

Title:

Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa

Classification:

ANTITOXIN/DNA

Authors:

Liu, Y., Zhang, H., Gao, Z., Dong, Y.

Citation:

Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.497Å R work:0.217R free:0.261

NDB ID:

 6LBW

PDB ID:

6LBW 

Release:

2020-11-18

Title:

Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex

Classification:

DNA

Authors:

Aoyama, H.A., Obika, S.O., Nakagawa, O.N.

Citation:

Crystal structure of Ag-mediated base pairs in uncanonical DNA duplex
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.501Å R work:0.214R free:0.242

NDB ID:

 6SA0

PDB ID:

6SA0 

Release:

2020-11-18

Title:

Ternary complex of Prim-PolC from Mycobacterium smegmatis with 2nt gapped DNA and UpNHpp

Classification:

TRANSFERASE

Authors:

Brissett, N.C., Zabrady, K., Plocinski, P., Bianchi, J., Korycka-Machala, M., Brzostek, A., Dziadek, J., Doherty, A.J.

Citation:

Molecular basis for DNA repair synthesis on short gaps by mycobacterial Primase-Polymerase C.
Nat Commun 11 pp.4196 - 4196 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.209Å R work:0.174R free:0.206

NDB ID:

 6SA1

PDB ID:

6SA1 

Release:

2020-11-18

Title:

Post catalytic complex of Prim-PolC from Mycobacterium smegmatis with gapped DNA and 3'-dUTP

Classification:

TRANSFERASE

Authors:

Brissett, N.C., Zabrady, K., Plocinski, P., Bianchi, J., Korycka-Machala, M., Brzostek, A., Dziadek, J., Doherty, A.J.

Citation:

Molecular basis for DNA repair synthesis on short gaps by mycobacterial Primase-Polymerase C.
Nat Commun 11 pp.4196 - 4196 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.01Å R work:0.184R free:0.204

NDB ID:

 6T5T

PDB ID:

6T5T 

Release:

2020-11-18

Title:

Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT

Classification:

DNA BINDING PROTEIN

Authors:

Golovinas, E., Manakova, E., Sasnauskas, G., Zaremba, M.

Citation:

Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.7003Å R work:0.18R free:0.213

NDB ID:

 6WBR

PDB ID:

6WBR 

Release:

2020-11-18

Title:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM

Classification:

RNA BINDING PROTEIN/DNA/RNA

Authors:

Das, A., Li, H.

Citation:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.91Å R work:0.224R free:0.266

NDB ID:

 6WC0

PDB ID:

6WC0 

Release:

2020-11-18

Title:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM

Classification:

RNA BINDING PROTEIN/RNA/DNA

Authors:

Das, A., Li, H.

Citation:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.61Å R work:0.237R free:0.303

NDB ID:

 6Z1A

PDB ID:

6Z1A 

Release:

2020-11-11

Title:

Ternary complex of Staphylococcus aureus DNA gyrase with AMK12 and DNA

Classification:

ISOMERASE

Authors:

Kolaric, A., Germe, T., Hrast, M., Stevenson, C.E.M., Lawson, D.M., Burton, N., Voros, J., Maxwell, A., Minovski, N., Anderluh, M.

Citation:

Potent novel DNA gyrase inhibitors bind asymmetrically to their target using unforeseen symmetrical halogen bonds
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.179R free:0.216

NDB ID:

 6L6S

PDB ID:

6L6S 

Release:

2020-11-04

Title:

The structure of the UdgX mutant H109E crosslinked to single-stranded DNA

Classification:

DNA BINDING PROTEIN

Authors:

Xie, W., Tu, J., Zeng, H.

Citation:

Structure of a covalent complex-forming UdgX mutant
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.06426Å R work:0.209R free:0.261

NDB ID:

 6L6Y

PDB ID:

6L6Y 

Release:

2020-11-04

Title:

Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA

Classification:

DNA BINDING PROTEIN/DNA,TRANSCRIPTION

Authors:

Balasubramanian, M., Kolatkar, P.R.

Citation:

Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.189R free:0.253

NDB ID:

 6WPF

PDB ID:

6WPF 

Release:

2020-11-04

Title:

Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and d4T

Classification:

TRANSFERASE/DNA

Authors:

Bertoletti, N., Chan, A.H., Schinazi, R.F., Anderson, K.S.

Citation:

Post-Catalytic Complexes with Emtricitabine or Stavudine and HIV-1 Reverse Transcriptase Reveal New Mechanistic Insights for Nucleotide Incorporation and Drug Resistance.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.53Å R work:0.181R free:0.231

NDB ID:

 6WPH

PDB ID:

6WPH 

Release:

2020-11-04

Title:

Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and (-)-FTC

Classification:

TRANSFERASE/DNA

Authors:

Bertoletti, N., Chan, A.H., Schinazi, R.F., Anderson, K.S.

Citation:

Post-Catalytic Complexes with Emtricitabine or Stavudine and HIV-1 Reverse Transcriptase Reveal New Mechanistic Insights for Nucleotide Incorporation and Drug Resistance.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.72Å R work:0.196R free:0.256

NDB ID:

 6WPJ

PDB ID:

6WPJ 

Release:

2020-11-04

Title:

Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and d4T

Classification:

TRANSFERASE/DNA

Authors:

Bertoletti, N., Chan, A.H., Schinazi, R.F., Anderson, K.S.

Citation:

Post-Catalytic Complexes with Emtricitabine or Stavudine and HIV-1 Reverse Transcriptase Reveal New Mechanistic Insights for Nucleotide Incorporation and Drug Resistance.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.73Å R work:0.203R free:0.256

NDB ID:

 6XCL

PDB ID:

6XCL 

Release:

2020-11-04

Title:

Crystal Structure of human telomeric DNA G-quadruplex in complex with a novel platinum(II) complex.

Classification:

DNA

Authors:

Miron, C.E., van Staalduinen, L., Rangaswamy, A.M.M., Chen, M., Liang, Y., Jia, Z., Mergny, J.L., Petitjean, A.

Citation:

Going Platinum to the Tune of a Remarkable Guanine Quadruplex Binder: Solution- and Solid-State Investigations.
Angew.Chem.Int.Ed.Engl. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.191R free:0.243

NDB ID:

 6LTR

PDB ID:

6LTR 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with single Mg2+ bound in catalytic pocket

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.51Å R work:0.197R free:0.225

NDB ID:

 6LTU

PDB ID:

6LTU 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with double Mg2+ bound in catalytic pocket

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.57Å R work:0.202R free:0.228

NDB ID:

 6LU0

PDB ID:

6LU0 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with 12 nt spacer

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.22Å R work:0.206R free:0.23

NDB ID:

 6UQI

PDB ID:

6UQI 

Release:

2020-10-28

Title:

Crystal structure of Q38A human DNA polymerase eta bound with 8-oxoadenine (oxoA) and non-hydrolyzable dGTP analog (dGTP*)

Classification:

TRANSFERASE/DNA

Authors:

Jung, H., Lee, S.

Citation:

Crystal structure of Q38A human DNA polymerase eta bound with 8-oxoadenine (oxoA) and non-hydrolyzable dGTP analog (dGTP*)
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.179R free:0.238

NDB ID:

 7CBY

PDB ID:

7CBY 

Release:

2020-10-28

Title:

Structure of FOXG1 DNA binding domain bound to DBE2 DNA site

Classification:

TRANSCRIPTION

Authors:

Dai, S., Li, J., Zhang, H., Chen, X., Guo, M., Chen, Z., Chen, Y.

Citation:

Structural basis for DNA recognition by FOXG1 and the characterization of disease-causing FOXG1 mutations.
J.Mol.Biol. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.646Å R work:0.156R free:0.182

NDB ID:

 6VVS

PDB ID:

6VVS 

Release:

2020-10-21

Title:

Crystal structure of a Mycobacterium smegmatis RNA polymerase transcription initiation complex with antibiotic Sorangicin

Classification:

TRANSCRIPTION,TRANSFERASE/DNA/ANTIBIOTIC

Authors:

Lilic, M., Chen, J., Boyaci, H., Braffman, N., Hubin, E.A., Darst, S.A., Campbell, E.A.

Citation:

The antibiotic Sorangicin inhibits DNA unwinding in Rif-resistant mycobacteria
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.112Å R work:0.215R free:0.257

NDB ID:

 6VVT

PDB ID:

6VVT 

Release:

2020-10-21

Title:

Crystal structure of a Mycobacterium smegmatis transcription initiation complex with Rifampicin-resistant RNA polymerase and antibiotic Sorangicin

Classification:

TRANSCRIPTION,TRANSFERASE/DNA/ANTIBIOTIC

Authors:

Lilic, M., Chen, J., Boyaci, H., Braffman, N., Hubin, E.A., Darst, S.A., Campbell, E.A.

Citation:

The antibiotic Sorangicin inhibits DNA unwinding in Rif-resistant mycobacteria
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.901Å R work:0.24R free:0.274

NDB ID:

 6VVV

PDB ID:

6VVV 

Release:

2020-10-21

Title:

Crystal structure of a Mycobacterium smegmatis transcription initiation complex with Rifampicin-resistant RNA polymerase

Classification:

TRANSCRIPTION,TRANSFERASE/DNA

Authors:

Lilic, M., Chen, J., Boyaci, H., Braffman, N., Hubin, E.A., Darst, S.A., Campbell, E.A.

Citation:

The antibiotic Sorangicin inhibits DNA unwinding in Rif-resistant mycobacteria
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.234R free:0.261

NDB ID:

 6W1A

PDB ID:

6W1A 

Release:

2020-10-21

Title:

Crystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound to DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Capodagli, G.C., Tylor, K.M., Kaelber, J.T., Petrou, V.I., Federle, M.J., Neiditch, M.B.

Citation:

Structure-function studies of Rgg binding to pheromones and target promoters reveal a model of transcription factor interplay.
Proc.Natl.Acad.Sci.USA 117 pp.24494 - 24502 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.264

NDB ID:

 6W1F

PDB ID:

6W1F 

Release:

2020-10-21

Title:

Crystal structure of Streptococcus thermophilus SHP pheromone receptor Rgg3 bound to DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Capodagli, G.C., Tylor, K.M., Kaelber, J.T., Petrou, V.I., Federle, M.J., Neiditch, M.B.

Citation:

Structure-function studies of Rgg binding to pheromones and target promoters reveal a model of transcription factor interplay.
Proc.Natl.Acad.Sci.USA 117 pp.24494 - 24502 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.216R free:0.266

NDB ID:

 6T1F

PDB ID:

6T1F 

Release:

2020-10-14

Title:

Crystal structure of the C-terminally truncated chromosome-partitioning protein ParB from Caulobacter crescentus complexed to the centromeric parS site

Classification:

DNA BINDING PROTEIN

Authors:

Jalal, A.S.B., Pastrana, C.L., Tran, N.T., Stevenson, C.E.M., Lawson, D.M., Moreno-Herrero, F., Le, T.B.K.

Citation:

Structural and biochemical analyses of Caulobacter crescentus ParB reveal the role of its N-terminal domain in chromosome segregation
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.239R free:0.262

NDB ID:

 6UBF

PDB ID:

6UBF 

Release:

2020-10-14

Title:

Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, X., Velmurugu, Y., Zheng, G., Park, B., Shim, Y., Kim, Y., Liu, L., Van Houten, B., He, C., Ansari, A., Min, J.H.

Citation:

Kinetic gating mechanism of DNA damage recognition by Rad4/XPC.
Nat Commun 6 pp.5849 - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:4.597Å R work:0.314R free:0.355

NDB ID:

 6UIN

PDB ID:

6UIN 

Release:

2020-10-14

Title:

Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Paul, D., Min, J.H.

Citation:

Role of Beta-hairpin motifs in the DNA duplex opening by the Rad4/XPC nucleotide excision repair complex
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.348Å R work:0.208R free:0.262

NDB ID:

 6XG8

PDB ID:

6XG8 

Release:

2020-10-14

Title:

ISCth4 transposase, pre-cleaved complex, PCC

Classification:

RECOMBINATION

Authors:

Kosek, D., Hickman, A.B., Ghirlando, R., He, S., Dyda, F.

Citation:

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition.
Embo J. pp.e105666 - e105666 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.22R free:0.267

NDB ID:

 6XGW

PDB ID:

6XGW 

Release:

2020-10-14

Title:

ISCth4 transposase, pre-reaction complex, PRC

Classification:

RECOMBINATION

Authors:

Kosek, D., Hickman, A.B., Ghirlando, R., He, S., Dyda, F.

Citation:

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition.
Embo J. pp.e105666 - e105666 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.249R free:0.296

NDB ID:

 6XGX

PDB ID:

6XGX 

Release:

2020-10-14

Title:

ISCth4 transposase, strand transfer complex 1, STC1

Classification:

RECOMBINATION

Authors:

Kosek, D., Hickman, A.B., Ghirlando, R., He, S., Dyda, F.

Citation:

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition.
Embo J. pp.e105666 - e105666 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.26R free:0.297

NDB ID:

 BDJ061

PDB ID:

7KCI 

Release:

2020-10-14

Title:

DETERMINANTS OF REPRESSOR/OPERATOR RECOGNITION FROM THE STRUCTURE OF THE TRP OPERATOR BINDING SITE

Classification:

DNA

Authors:

Shakked, Z., Guzikevich-Guerstein, G., Frolow, F., Rabinovich, D., Joachimiak, A., Sigler, P.B.

Citation:

Determinants of repressor/operator recognition from the structure of the trp operator binding site.
Nature 368 pp.469 - 473 1994

Experiment:

 X-RAY DIFFRACTION Resolution:1.95Å

NDB ID:

 6LA8

PDB ID:

6LA8 

Release:

2020-10-07

Title:

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.206R free:0.264

NDB ID:

 6LA9

PDB ID:

6LA9 

Release:

2020-10-07

Title:

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant)

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.194R free:0.265

NDB ID:

 6M3V

PDB ID:

6M3V 

Release:

2020-10-07

Title:

355 bp di-nucleosome harboring cohesive DNA termini

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.6Å R work:0.204R free:0.26

NDB ID:

 6M44

PDB ID:

6M44 

Release:

2020-10-07

Title:

355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant)

Classification:

DNA BINDING PROTEIN

Authors:

Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.

Citation:

Near-atomic resolution structures of interdigitated nucleosome fibres.
Nat Commun 11 pp.4747 - 4747 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.81Å R work:0.207R free:0.286

NDB ID:

 6SY0

PDB ID:

6SY0 

Release:

2020-10-07

Title:

Structure of the Plasmodium falciparum SIP2 DNA-binding AP2 tandem repeat in complex with two SPE2 half-sites

Classification:

DNA BINDING PROTEIN

Authors:

Niederwieser, I., Reiter, D., Kantsadi, A., Voss, T., Vakonakis, I.

Citation:

Structural and functional analysis of the Plasmodium falciparum SIP2 DNA binding domain
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.102Å R work:0.273R free:0.318

NDB ID:

 6WIC

PDB ID:

6WIC 

Release:

2020-10-07

Title:

Pre-catalytic quaternary complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Classification:

TRANSFERASE/DNA

Authors:

Kaminski, A.M., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break.
Nat Commun 11 pp.4784 - 4784 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.55Å R work:0.165R free:0.179

NDB ID:

 6WID

PDB ID:

6WID 

Release:

2020-10-07

Title:

Nucleotide incorporation intermediate into quaternary complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Classification:

TRANSFERASE/DNA

Authors:

Kaminski, A.M., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break.
Nat Commun 11 pp.4784 - 4784 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.163R free:0.177

NDB ID:

 6WIE

PDB ID:

6WIE 

Release:

2020-10-07

Title:

Post-catalytic nicked complex of human Polymerase Mu on a complementary DNA double-strand break substrate

Classification:

TRANSFERASE/DNA

Authors:

Kaminski, A.M., Pryor, J.M., Ramsden, D.A., Kunkel, T.A., Pedersen, L.C., Bebenek, K.

Citation:

Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break.
Nat Commun 11 pp.4784 - 4784 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.169R free:0.186

NDB ID:

 6ZL2

PDB ID:

6ZL2 

Release:

2020-10-07

Title:

Structure of a parallel c-Myc modified with 3' duplex stem-loop overhang

Classification:

DNA

Authors:

Vianney, Y.M., Preckwinkel, P., Mohr, S., Weisz, K.

Citation:

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Chemistry pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6ZL9

PDB ID:

6ZL9 

Release:

2020-10-07

Title:

Structure of a parallel c-Myc modified with 5' duplex stem-loop overhang

Classification:

DNA

Authors:

Vianney, Y.M., Preckwinkel, P., Mohr, S., Weisz, K.

Citation:

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Chemistry pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6ZTE

PDB ID:

6ZTE 

Release:

2020-10-07

Title:

Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop

Classification:

DNA

Authors:

Vianney, Y.M., Preckwinkel, P., Mohr, S., Weisz, K.

Citation:

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Chemistry pp. - 2020

Experiment:

 SOLUTION NMR

NDB ID:

 7CV3

PDB ID:

7CV3 

Release:

2020-10-07

Title:

Quadruplex-duplex hybrid structure in the PIM1 gene, Form 1

Classification:

DNA

Authors:

Tan, D.J.Y., Winnerdy, F.R., Lim, K.W., Phan, A.T.

Citation:

Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Nucleic Acids Res. 48 pp.11162 - 11171 2020

Experiment:

 SOLUTION NMR

NDB ID:

 7CV4

PDB ID:

7CV4 

Release:

2020-10-07

Title:

Quadruplex-duplex hybrid structure in the PIM1 gene, Form 2

Classification:

DNA

Authors:

Tan, D.J.Y., Winnerdy, F.R., Lim, K.W., Phan, A.T.

Citation:

Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Nucleic Acids Res. 48 pp.11162 - 11171 2020

Experiment:

 SOLUTION NMR

NDB ID:

 6R2V

PDB ID:

6R2V 

Release:

2020-09-30

Title:

Arabidopsis NF-Y/CCAAT-box complex

Classification:

TRANSCRIPTION

Authors:

Chaves-Sanjuan, A., Gnesutta, N., Chiara, M., Bernardini, A., Horner, D., Nardini, M., Mantovani, R.

Citation:

Structural features of NF-Y/CCAAT association in plants
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.503Å R work:0.199R free:0.246

NDB ID:

 6UEU

PDB ID:

6UEU 

Release:

2020-09-30

Title:

Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP

Classification:

REPLICATION

Authors:

Walsh, A.R., Beese, L.S., Wu, E.Y.

Citation:

Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.2R free:0.242

NDB ID:

 6X6Z

PDB ID:

6X6Z 

Release:

2020-09-30

Title:

Rev1 Ternary Complex with dCTP and Ca2+

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P.K., Freudenthal, B.D.

Citation:

Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA 117 pp.25494 - 25504 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.4Å R work:0.186R free:0.207

NDB ID:

 6X70

PDB ID:

6X70 

Release:

2020-09-30

Title:

Rev1-DNA Binary Complex

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P.K., Freudenthal, B.D.

Citation:

Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA 117 pp.25494 - 25504 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.209R free:0.261

NDB ID:

 6X71

PDB ID:

6X71 

Release:

2020-09-30

Title:

Rev1 Mg2+-facilitated Intermediate complex with reactant dCTP and product dCMP

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P.K., Freudenthal, B.D.

Citation:

Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA 117 pp.25494 - 25504 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.78Å R work:0.184R free:0.232

NDB ID:

 6X72

PDB ID:

6X72 

Release:

2020-09-30

Title:

Rev1 Mg2+-facilitated Product Complex with two monophosphates

Classification:

REPLICATION/DNA

Authors:

Weaver, T.M., Cortez, L.M., Khoang, T.H., Washington, M.T., Agarwal, P.K., Freudenthal, B.D.

Citation:

Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA 117 pp.25494 - 25504 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.19Å R work:0.186R free:0.252

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