A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Jun-2018 number of released structures: 9555
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6453  Download results as an excel file       Gallery view

NDB ID:

5ORQ

PDB ID:

5ORQ 

Release:

2018-06-20

Title:

Crystal structure of designed cPPR-Telo1 in complex with ssDNA

Classification:

DE NOVO PROTEIN

Authors:

Spahr, H., Chia, T., Lingford, J.P., Siira, S.J., Cohen, S.B., Filipovska, A., Rackham, O.

Citation:

Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins.
Nat Commun 9 pp.2212 - 2212 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.188R free:0.228

NDB ID:

5W4U

PDB ID:

5W4U 

Release:

2018-06-20

Title:

Pol II elongation complex with an N6-methyladenine-containing template

Classification:

DNA BINDING PROTEIN/RNA/DNA

Authors:

Wang, W., Wang, D.

Citation:

Pol II elongation complex with an N6-methyladenine-containing template
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.226R free:0.259

NDB ID:

5W51

PDB ID:

5W51 

Release:

2018-06-20

Title:

Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP

Classification:

DNA BINDING PROTEIN/RNA/DNA

Authors:

Wang, W., Wang, D.

Citation:

Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.404Å R work:0.226R free:0.253

NDB ID:

5XSK

PDB ID:

5XSK 

Release:

2018-06-20

Title:

Crystal structure of PWWP-DNA complex for human hepatoma-derived growth factor

Classification:

HORMONE

Authors:

Chen, L.Y., Huang, Y.C., Hsieh, Y.C., Lin, P.J.

Citation:

Structure of PWWP-DNA complex at 2.84 Angstroms resolution
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.84Å R work:0.191R free:0.269

NDB ID:

5ZK1

PDB ID:

5ZK1 

Release:

2018-06-20

Title:

Crystal Structure of the CRTC2(SeMet)-CREB-CRE complex

Classification:

TRANSCRIPTION/DNA

Authors:

Song, Y., Zhai, L., Valencia Swain, J., Chen, Y., Wang, P., Chen, L., Liu, Y., Xiang, S.

Citation:

Structural Insights into the CRTC2-CREB Complex Assembly on CRE.
J. Mol. Biol. 430 pp.1926 - 1939 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.228R free:0.268

NDB ID:

5ZKO

PDB ID:

5ZKO 

Release:

2018-06-20

Title:

Crystal structure of the CRTC2-CREB-CRE complex

Classification:

TRANSCRIPTION/DNA

Authors:

Song, Y., Zhai, L., Valencia Swain, J., Chen, Y., Wang, P., Chen, L., Liu, Y., Xiang, S.

Citation:

Structural Insights into the CRTC2-CREB Complex Assembly on CRE.
J. Mol. Biol. 430 pp.1926 - 1939 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.242R free:0.284

NDB ID:

6CCW

PDB ID:

6CCW 

Release:

2018-06-20

Title:

Hybrid-2 form Human Telomeric G Quadruplex in Complex with Epiberberine

Classification:

DNA

Authors:

Lin, C., Wu, G., Wang, K., Onel, B., Sakai, S., Shao, Y., Yang, D.

Citation:

Molecular Recognition of the Hybrid-2 Human Telomeric G-quadruplex by Epiberberine: Insights into Conversion of Telomeric G-quadruplex Structures.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6CTI

PDB ID:

6CTI 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CCL2, beta, gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.001Å R work:0.176R free:0.226

NDB ID:

6CTJ

PDB ID:

6CTJ 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCH3, beta, gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.19R free:0.257

NDB ID:

6CTK

PDB ID:

6CTK 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHF-R/S isomers, beta, gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.153Å R work:0.178R free:0.244

NDB ID:

6CTL

PDB ID:

6CTL 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL-R/S isomers, beta, gamma dTTP analogue

Classification:

Transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.179R free:0.225

NDB ID:

6CTM

PDB ID:

6CTM 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL(R-isomer), beta, gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.101Å R work:0.185R free:0.257

NDB ID:

6CTN

PDB ID:

6CTN 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CFCL,beta-gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.92Å R work:0.186R free:0.234

NDB ID:

6CTO

PDB ID:

6CTO 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CF2, beta, gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.178R free:0.231

NDB ID:

6CTP

PDB ID:

6CTP 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CH2, beta, gamma dTTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.224R free:0.29

NDB ID:

6CTQ

PDB ID:

6CTQ 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with dCTP

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.87Å R work:0.175R free:0.228

NDB ID:

6CTR

PDB ID:

6CTR 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHF (R & S isomers), beta, gamma dCTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.172R free:0.222

NDB ID:

6CTT

PDB ID:

6CTT 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL (R & S isomers, beta, gamma dCTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.175R free:0.222

NDB ID:

6CTU

PDB ID:

6CTU 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CFCL, beta, gamma dCTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.171R free:0.206

NDB ID:

6CTV

PDB ID:

6CTV 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CF2, beta, gamma dCTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.02Å R work:0.18R free:0.22

NDB ID:

6CTW

PDB ID:

6CTW 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CCL2, beta, gamma dCTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.981Å R work:0.174R free:0.219

NDB ID:

6CTX

PDB ID:

6CTX 

Release:

2018-06-20

Title:

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CBr2, beta, gamma dCTP analogue

Classification:

transcription/dna

Authors:

Batra, V.K., Oertell, K., Beard, W.A., Kashemirov, B.A., McKenna, C.E., Goodman, M.F., Wilson, S.H.

Citation:

Mapping functional substrate-enzyme interactions in the pol beta active site through chemical biology: Structural responses to acidity modification of incoming dNTPs.
Biochemistry pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.02Å R work:0.176R free:0.228

NDB ID:

5LQG

PDB ID:

5LQG 

Release:

2018-06-13

Title:

A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH

Classification:

DNA

Authors:

Wang, B., Galer, P., Sket, P., Plavec, J.

Citation:

Ammonium ion as a probe to asses the kinetics of structural changes upon de/protonation of G-quadruplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5MCT

PDB ID:

5MCT 

Release:

2018-06-13

Title:

p53-DNA complex 1

Classification:

TRANSCRIPTION

Authors:

Golovenko, D., Rozenberg, H., Shakked, Z.

Citation:

p53-DNA complex 1
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.446Å R work:0.144R free:0.188

NDB ID:

5MCU

PDB ID:

5MCU 

Release:

2018-06-13

Title:

p53-DNA complex 2

Classification:

TRANSCRIPTION

Authors:

Golovenko, D., Rozenberg, H., Shakked, Z.

Citation:

p53-DNA complex 2
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.168R free:0.201

NDB ID:

5MCV

PDB ID:

5MCV 

Release:

2018-06-13

Title:

p53-DNA complex 3

Classification:

TRANSCRIPTION

Authors:

Golovenko, D., Rozenberg, H., Shakked, Z.

Citation:

p53-DNA complex 3
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.154R free:0.187

NDB ID:

5MCW

PDB ID:

5MCW 

Release:

2018-06-13

Title:

p53-DNA complex 4

Classification:

TRANSCRIPTION

Authors:

Golovenko, D., Rozenberg, H., Shakked, Z.

Citation:

p53-DNA complex 4
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.897Å R work:0.199R free:0.234

NDB ID:

5MG7

PDB ID:

5MG7 

Release:

2018-06-13

Title:

p53-DNA complex 7

Classification:

TRANSCRIPTION

Authors:

Rozenberg, H., Braeuning, B., Golovenko, D., Shakked, Z.

Citation:

p53-DNA complex 7
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.17R free:0.202

NDB ID:

5O4D

PDB ID:

5O4D 

Release:

2018-06-13

Title:

G-quadruplex of Human papillomavirus type 52

Classification:

DNA

Authors:

Marusic, M., Plavec, J.

Citation:

G-quadruplex of Human papillomavirus type 52
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5VHE

PDB ID:

5VHE 

Release:

2018-06-13

Title:

DHX36 in complex with the c-Myc G-quadruplex

Classification:

HYDROLASE

Authors:

Chen, M., Tippana, R., Demeshkina, N.A., Murat, P., Balasubramanian, S., Myong, S., Ferre-D'Amare, A.R.

Citation:

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36
Nature pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.793Å R work:0.238R free:0.28

NDB ID:

6ERL

PDB ID:

6ERL 

Release:

2018-06-13

Title:

Quadruplex with flipped tetrad formed by the c-myc promoter sequence

Classification:

DNA

Authors:

Karg, B., Weisz, K.

Citation:

Loop Length Affects Syn-Anti Conformational Rearrangements in Parallel G-Quadruplexes.
Chemistry pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6GMY

PDB ID:

6GMY 

Release:

2018-06-13

Title:

Tc-DNA/RNA duplex

Classification:

DNA-RNA HYBRID

Authors:

Istrate, A., Johannsen, S., Istrate, A., Sigel, R.K.O., Leumann, C.

Citation:

NMR solution structure of fully modified tc-DNA/RNA, tc-DNA/DNA and tc-DNA/tc-DNA duplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6GPI

PDB ID:

6GPI 

Release:

2018-06-13

Title:

Tc-DNA/DNA duplex

Classification:

DNA-RNA HYBRID

Authors:

Istrate, A., Johannsen, S., Istrate, A., Sigel, R.K.O., Leumann, C.

Citation:

NMR solution structure of fully modified tc-DNA/RNA, tc-DNA/DNA and tc-DNA/tc-DNA duplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5OND

PDB ID:

5OND 

Release:

2018-06-06

Title:

RfaH from Escherichia coli in complex with ops DNA

Classification:

TRANSCRIPTION

Authors:

Zuber, P.K., Artsimovitch, I., NandyMazumdar, M., Liu, Z., Nedialkov, Y., Schweimer, K., Rosch, P., Knauer, S.H.

Citation:

The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand.
Elife 7 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.186R free:0.233

NDB ID:

6GN4

PDB ID:

6GN4 

Release:

2018-06-06

Title:

tc-DNA/tc-DNA duplex

Classification:

DNA

Authors:

Istrate, A., Johannsen, S., Istrate, A., Sigel, R.K.O., Leumann, C.

Citation:

NMR solution structure of fully modified tc-DNA/RNA, tc-DNA/DNA and tc-DNA/tc-DNA duplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5MF7

PDB ID:

5MF7 

Release:

2018-05-30

Title:

p53-DNA complex 6

Classification:

TRANSCRIPTION

Authors:

Rozenberg, H., Diskin-Posner, Y., Golovenko, D., Shakked, Z.

Citation:

p53-DNA complex 6
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.59Å R work:0.198R free:0.233

NDB ID:

6C2S

PDB ID:

6C2S 

Release:

2018-05-30

Title:

Transcriptional repressor, CouR, bound to a 23-mer DNA duplex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Cogan, D.P., Baraquet, C., Harwood, C.S., Nair, S.K.

Citation:

Structural basis of transcriptional regulation by CouR, a repressor of coumarate catabolism in Rhodopseudomonas palustris.
J. Biol. Chem. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.215R free:0.266

NDB ID:

6CQ2

PDB ID:

6CQ2 

Release:

2018-05-30

Title:

Crystal structure of Mycobacterium tuberculosis Topoisomerase I in complex with oligonucleotide MTS2-12 and Magnesium

Classification:

ISOMERASE/DNA

Authors:

Cao, N., Thirunavukkaraus, A., Tan, K., Tse-Dinh, Y.-C.

Citation:

Crystal structure of Mycobacterium tuberculosis Topoisomerase I in complex with oligonucleotide MTS2-12 and Magnesium
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.004Å R work:0.188R free:0.248

NDB ID:

6CQI

PDB ID:

6CQI 

Release:

2018-05-30

Title:

2.42A Crystal structure of Mycobacterium tuberculosis Topoisomerase I in complex with an oligonucleotide MTS2-11

Classification:

ISOMERASE/DNA

Authors:

Cao, N., Thirunavukkarasu, A., Tan, K., Tse-Dinh, Y.-C.

Citation:

2.42A Crystal structure of Mycobacterium tuberculosis Topoisomerase I in complex with an oligonucleotide MTS2-11
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.42Å R work:0.223R free:0.268

NDB ID:

6GIS

PDB ID:

6GIS 

Release:

2018-05-30

Title:

Structural basis of human clamp sliding on DNA

Classification:

DNA BINDING PROTEIN

Authors:

De March, M., Merino, N., Barrera-Vilarmau, S., Crehuet, R., Onesti, S., Blanco, F.J., De Biasio, A.

Citation:

Structural basis of human PCNA sliding on DNA.
Nat Commun 8 pp.13935 - 13935 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.82Å R work:0.246R free:0.283

NDB ID:

5YTY

PDB ID:

5YTY 

Release:

2018-05-23

Title:

Crystal structure of echinomycin-d(ACGACGT/ACGTCGT) complex

Classification:

ANTIBIOTIC/DNA

Authors:

Wu, P.C., Tzeng, S.L., Chang, C.K., Kao, Y.F., Waring, M.J., Hou, M.H.

Citation:

Cooperative recognition of T:T mismatch by echinomycin causes structural distortions in DNA duplex
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.58Å R work:0.222R free:0.263

NDB ID:

5YTZ

PDB ID:

5YTZ 

Release:

2018-05-23

Title:

Crystal structure of echinomycin-d(ACGTCGT)2 complex

Classification:

ANTIBIOTIC/DNA

Authors:

Wu, P.C., Tzeng, S.L., Chang, C.K., Kao, Y.F., Waring, M.J., Hou, M.H.

Citation:

Cooperative recognition of T:T mismatch by echinomycin causes structural distortions in DNA duplex
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.206R free:0.234

NDB ID:

5YWS

PDB ID:

5YWS 

Release:

2018-05-23

Title:

Crystal structure of TREX1 in complex with a Y structured DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Huang, K.W., Liu, T.C., Liang, R.Y., Chu, L.Y., Cheng, H.L., Chu, J.W., Hsiao, Y.Y.

Citation:

Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol. 16 pp.e2005653 - e2005653 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.188R free:0.225

NDB ID:

5YWT

PDB ID:

5YWT 

Release:

2018-05-23

Title:

Crystal structure of TREX1 in complex with a duplex DNA with 3' overhang

Classification:

DNA BINDING PROTEIN

Authors:

Huang, K.W., Liu, T.C., Liang, R.Y., Chu, L.Y., Cheng, H.L., Chu, J.W., Hsiao, Y.Y.

Citation:

Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol. 16 pp.e2005653 - e2005653 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.194R free:0.218

NDB ID:

5YWU

PDB ID:

5YWU 

Release:

2018-05-23

Title:

Crystal structure of TREX1 in complex with a inosine contained dsDNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Huang, K.W., Liu, T.C., Liang, R.Y., Chu, L.Y., Cheng, H.L., Chu, J.W., Hsiao, Y.Y.

Citation:

Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol. 16 pp.e2005653 - e2005653 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.223R free:0.254

NDB ID:

5YWV

PDB ID:

5YWV 

Release:

2018-05-23

Title:

Crystal structure of TREX1 in complex with a inosine contained ssDNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Huang, K.W., Liu, T.C., Liang, R.Y., Chu, L.Y., Cheng, H.L., Chu, J.W., Hsiao, Y.Y.

Citation:

Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1
PLoS Biol. 16 pp.e2005653 - e2005653 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.158R free:0.219

NDB ID:

5NO6

PDB ID:

5NO6 

Release:

2018-05-16

Title:

TEAD4-HOXB13 complex bound to DNA

Classification:

TRANSCRIPTION

Authors:

Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.

Citation:

TEAD4-HOXB13 complex bound to DNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.88Å R work:0.239R free:0.316

NDB ID:

5XJW

PDB ID:

5XJW 

Release:

2018-05-16

Title:

Crystal Structure of the [Co2+-(Chromomycin A3)2]-CCG repeats Complex

Classification:

DNA/ANTIBIOTIC

Authors:

Tseng, W.H., Wu, P.C., Satange, R.B., Hou, M.H.

Citation:

Crystal Structure of the [Co2+-(Chromomycin A3)2]-CCG repeats Complex
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.097Å R work:0.225R free:0.245

NDB ID:

6GED

PDB ID:

6GED 

Release:

2018-05-16

Title:

Adhesin domain of PrgB from Enterococcus faecalis bound to DNA

Classification:

CELL ADHESION

Authors:

Schmitt, A., Jiang, K., Camacho, M.I., Jonna, V.R., Hofer, A., Westerlund, F., Christie, P.J., Berntsson, R.P.

Citation:

PrgB Promotes Aggregation, Biofilm Formation, and Conjugation through DNA Binding and Compaction.
Mol. Microbiol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.794Å R work:0.174R free:0.211

NDB ID:

5UK7

PDB ID:

5UK7 

Release:

2018-05-09

Title:

Escherichia coli Hfq bound to dsDNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Orans, J., Kovach, A.R., Hoff, K.E., Brennan, R.G.

Citation:

Crystal structure of Escherichia coli Hfq DNA complex reveals multifunctional nucleic acid binding site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.21R free:0.259