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As of 22-Oct-2014 number of released structures: 7495
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 4845   (Gallery view)

NDB ID:

2MFT

PDB ID:

2MFT 

Release:

2014-10-22

Title:

Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions

Classification:

DNA

Authors:

Karsisiotis, A.I., Webba da Silva, M.

Citation:

Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MNX

PDB ID:

2MNX 

Release:

2014-10-08

Title:

Major groove orientation of the (2S)-N6-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene

Classification:

DNA

Authors:

Kowal, E.A., Wickramaratne, S., Kotapati, S., Turo, M., Tretyakova, N., Stone, M.P.

Citation:

Major Groove Orientation of the (2S)-N(6)-(2-Hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA Adduct Induced by 1,2-Epoxy-3-butene.
Chem.Res.Toxicol. pp. - 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2735

PDB ID:

4MS5 

Release:

2014-10-08

Title:

Lambda-[Ru(TAP)2(dppz-11,12-(F)2)]2+ bound to CCGGATCCGG

Classification:

DNA

Authors:

Hall, J.P., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

The effects of disubstitution on the binding of ruthenium complexes to DNA
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.23Å R work:0.218R free:0.245

NDB ID:

NA3058

PDB ID:

4QM7 

Release:

2014-10-08

Title:

Structure of bacterial polynucleotide kinase bound to GTP and pDNA

Classification:

TRANSFERASE/DNA

Authors:

Das, U., Wang, L.K., Smith, P., Munir, A., Shuman, S.

Citation:

Structures of bacterial polynucleotide kinase in a Michaelis complex with NTPMg2+ and 5'-OH RNA and a mixed substrate-product complex with NTPMg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.162R free:0.188

NDB ID:

NA3129

PDB ID:

4R2A 

Release:

2014-10-08

Title:

Egr1/Zif268 zinc fingers in complex with methylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.591Å R work:0.137R free:0.188

NDB ID:

NA3130

PDB ID:

4R2C 

Release:

2014-10-08

Title:

Egr1/Zif268 zinc fingers in complex with hydroxymethylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.89Å R work:0.198R free:0.249

NDB ID:

NA3131

PDB ID:

4R2D 

Release:

2014-10-08

Title:

Egr1/Zif268 zinc fingers in complex with formylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.088Å R work:0.197R free:0.239

NDB ID:

NA3132

PDB ID:

4R2E 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with methylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.84Å R work:0.161R free:0.207

NDB ID:

NA3133

PDB ID:

4R2P 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with hydroxymethylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.788Å R work:0.178R free:0.209

NDB ID:

NA3134

PDB ID:

4R2Q 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with formylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.54Å R work:0.16R free:0.192

NDB ID:

NA3135

PDB ID:

4R2R 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) zinc fingers in complex with carboxylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.089Å R work:0.193R free:0.222

NDB ID:

NA3136

PDB ID:

4R2S 

Release:

2014-10-08

Title:

Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA

Classification:

DNA Binding Protein/DNA

Authors:

Hashimoto, H., Olanrewaju, Y.O., Zheng, Y., Wilson, G.G., Zhang, X., Cheng, X.

Citation:

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.
Genes Dev. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.489Å R work:0.207R free:0.268

NDB ID:

NA3140

PDB ID:

4R28 

Release:

2014-10-08

Title:

MspJI Restriction Endonuclease in Complex with 27-mer Oligonucleotide

Classification:

Hydrolase/DNA

Authors:

Horton, J.R., Wang, H., Mabuchi, M.Y., Zhang, X., Roberts, R.J., Wilson, G.G., Zheng, Y., Cheng, X.

Citation:

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.055Å R work:0.226R free:0.258

NDB ID:

NA3152

PDB ID:

4R63 

Release:

2014-10-08

Title:

Binary complex crystal structure of R258A mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.179R free:0.232

NDB ID:

NA3153

PDB ID:

4R64 

Release:

2014-10-08

Title:

Binary complex crystal structure of E295K mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.189R free:0.243

NDB ID:

NA3154

PDB ID:

4R65 

Release:

2014-10-08

Title:

Ternary complex crystal structure of R258A mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.95Å R work:0.186R free:0.222

NDB ID:

NA3155

PDB ID:

4R66 

Release:

2014-10-08

Title:

Ternary complex crystal structure of E295K mutant of DNA polymerase Beta

Classification:

Transferase/DNA

Authors:

Beard, W.A., Shock, D.D., Batra, V.K., Prasad, R., Wilson, S.H.

Citation:

Substrate-Induced DNA Polymerase beta Activation.
J.Biol.Chem. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.181R free:0.247

NDB ID:

NA2613

PDB ID:

4LOX 

Release:

2014-09-24

Title:

Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA

Classification:

HYDROLASE/DNA

Authors:

Chik, J., Shen, B., Stoddard, B.

Citation:

Crystal structure of a LAGLIDADG endonuclease from the Sordaria Macrospore.
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.186R free:0.276

NDB ID:

NA2615

PDB ID:

4LTF 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity(1/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.136R free:0.157

NDB ID:

NA2616

PDB ID:

4LTG 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (2/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.18Å R work:0.089R free:0.113

NDB ID:

NA2617

PDB ID:

4LTH 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (3/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.145R free:0.174

NDB ID:

NA2618

PDB ID:

4LTI 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (4/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.41Å R work:0.131R free:0.162

NDB ID:

NA2619

PDB ID:

4LTJ 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (5/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.146R free:0.18

NDB ID:

NA2620

PDB ID:

4LTK 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (6/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.136R free:0.153

NDB ID:

NA2621

PDB ID:

4LTL 

Release:

2014-09-24

Title:

Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (7/7)

Classification:

DNA

Authors:

Hall, J.P., Sanchez-Weatherby, J., O'Sullivan, K., Kelly, J.M., Cardin, C.J.

Citation:

Controlled dehydration of a ruthenium-bound DNA oligonucleotide complex induces reversible kinking
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.07Å R work:0.151R free:0.191

NDB ID:

NA2622

PDB ID:

4LY2 

Release:

2014-09-24

Title:

X-ray crystal structure of the ruthenium complex [Ru(phen)2(dppz)]2+ bound to d(TCGGTACCGA)

Classification:

DNA

Authors:

Niyazi, H, Teixeira, S, Mitchell, E, Forsyth, T, Cardin, C

Citation:

X-ray crystal structure of the ruthenium complex [Ru(phen)2(dppz)]2+ bound to d(TCGGTACCGA)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.188R free:0.218

NDB ID:

NA2663

PDB ID:

4LVI 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 4.6

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.205R free:0.247

NDB ID:

NA2664

PDB ID:

4LVJ 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt). Mn-bound crystal structure at pH 5.5

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.17Å R work:0.201R free:0.241

NDB ID:

NA2678

PDB ID:

4LVK 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.37Å R work:0.2R free:0.249

NDB ID:

NA2680

PDB ID:

4LVL 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Thiophosphate). Mn-bound crystal structure at pH 6.8

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.186R free:0.237

NDB ID:

NA2681

PDB ID:

4LVM 

Release:

2014-09-24

Title:

MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (23nt). Mn-bound crystal structure at pH 6.5

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pluta, R., Boer, D.R., Russi, S., Fernandez-Lopez, C., Lorenzo-Diaz, F., Perez-Luque, R., Espinosa, M., Coll, M.

Citation:

Structures of DNA-MobM relaxase complexes reveal a histidine/metal catalysis for DNA cleavage and ligation
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.254R free:0.293

NDB ID:

NA2685

PDB ID:

4M3I 

Release:

2014-09-24

Title:

X-ray crystal structure of the ruthenium complex [Ru(TAP)2(dppz-{Me2})]2+ bound to d(CCGGTACCGG)

Classification:

DNA

Authors:

Niyazi, H, Teixeira, S, Mitchell, E, Forsyth, T, Cardin, C

Citation:

X-ray crystal structure of the ruthenium complex [Ru(TAP)2(dppz-{Me2})]2+ bound to d(CCGGTACCGG)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.251R free:0.277

NDB ID:

NA2718

PDB ID:

4MJ9 

Release:

2014-09-24

Title:

lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer

Classification:

DNA

Authors:

Hall, J.P., Beer, H., Buchner, K., Cardin, D.J., Cardin, C.J.

Citation:

Perferred orientation in an angled intercalation site of a methyl-substituted lambda-[Ru(TAP)2(dppz)]2+ complex bound to d(TCGGCGCCGA)2
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:0.97Å R work:0.086R free:0.095

NDB ID:

NA3126

PDB ID:

4QPQ 

Release:

2014-09-24

Title:

Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM

Classification:

TRANSCRIPTION/DNA

Authors:

Peng, Y., Lu, J., Wong, J.J., Edwards, R.A., Frost, L.S., Mark Glover, J.N.

Citation:

Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM.
J.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.106Å R work:0.223R free:0.231

NDB ID:

2MNB

PDB ID:

2MNB 

Release:

2014-09-17

Title:

Thiazotropsin B DNA recognition sequence d(CGACGCGTCG)2

Classification:

DNA

Authors:

Alniss, H.Y., Salvia, M.V., Sadikov, M., Golovchenko, I., Anthony, N.G., Khalaf, A.I., MacKay, S.P., Suckling, C.J., Parkinson, J.A.

Citation:

Recognition of the DNA minor groove by thiazotropsin analogues.
Chembiochem 15 pp.1978 - 1990 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2722

PDB ID:

4M3V 

Release:

2014-09-17

Title:

X-ray crystal structure of the ruthenium complex [Ru(Tap)2(dppz-{Me2})]2+ bound to d(TCGGTACCGA)

Classification:

DNA

Authors:

Niyazi, H., Teixeira, S., Mitchell, E., Forsyth, T., Cardin, C.

Citation:

X-ray crystal structure of the ruthenium complex [Ru(Tap)2(dppz-{Me2})]2+ bound to d(TCGGTACCGA)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.244R free:0.321

NDB ID:

2MO2

PDB ID:

2MO2 

Release:

2014-09-10

Title:

Solution NMR structure of DNA dodecamer containing the 5-hydroxycytosine

Classification:

DNA

Authors:

Szulik, M.

Citation:

Characterization of 5-hydroxycytosine in DNA
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MO7

PDB ID:

2MO7 

Release:

2014-09-10

Title:

Solution NMR structure of DNA dodecamer with A:C mismatch

Classification:

DNA

Authors:

Szulik, M., Donahue, P., Stone, M.

Citation:

Characterization of 5-hydroxycytosine in DNA
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MOE

PDB ID:

2MOE 

Release:

2014-09-10

Title:

Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA

Classification:

Hydrolase/DNA

Authors:

Walavalkar, N.M., Cramer, J.M., Buchwald, W.A., Scarsdale, N., Williams Jr., D.C.

Citation:

Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches
Nucleic Acids Res. pp. - 2014

Experiment:

SOLUTION NMR

NDB ID:

4CH1

PDB ID:

4CH1 

Release:

2014-09-03

Title:

RRM domain from C. elegans SUP-12 bound to GGTGTGC DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Amrane, S., Rebora, K., Zniber, I., Dupuy, D., Mackereth, C.D.

Citation:

Backbone-Independent Nucleic Acid Binding by Splicing Factor Sup-12 Reveals Key Aspects of Molecular Recognition
Nat.Commun. 5 pp.4595 - 2014

Experiment:

SOLUTION NMR

NDB ID:

NA3085

PDB ID:

4QYZ 

Release:

2014-09-03

Title:

Crystal structure of a CRISPR RNA-guided surveillance complex, Cascade, bound to a ssDNA target

Classification:

IMMUNE SYSTEM/DNA/RNA

Authors:

Mulepati, S., Heroux, A., Bailey, S.

Citation:

Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target.
Science pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0303Å R work:0.223R free:0.267

NDB ID:

NA2658

PDB ID:

4MF8 

Release:

2014-08-27

Title:

Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template O6MG and incoming CTP

Classification:

TRANSFERASE/DNA

Authors:

Koag, M.C., Min, K., Monzingo, A.F., Lee, S.

Citation:

Structures of human DNA polymerase beta inserting bases opposite templating O6MG
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.32Å R work:0.209R free:0.271

NDB ID:

NA2659

PDB ID:

4MFA 

Release:

2014-08-27

Title:

Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template O6MG and incoming TTP

Classification:

TRANSFERASE/DNA

Authors:

Koag, M.C., Min, K., Monzingo, A.F., Lee, S.

Citation:

Structures of human DNA polymerase beta inserting bases opposite templating O6MG
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.27Å R work:0.211R free:0.283

NDB ID:

NA2968

PDB ID:

4Q0R 

Release:

2014-08-27

Title:

The catalytic core of Rad2 (complex I)

Classification:

Hydrolase/DNA

Authors:

Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Studnicka, J., Nowotny, M.

Citation:

Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.245R free:0.31

NDB ID:

NA2969

PDB ID:

4Q0W 

Release:

2014-08-27

Title:

he catalytic core of Rad2 in complex with DNA substrate (complex II)

Classification:

Hydrolase/DNA

Authors:

Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Studnicka, J., Nowotny, M.

Citation:

Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.183R free:0.229

NDB ID:

NA2970

PDB ID:

4Q10 

Release:

2014-08-27

Title:

The catalytic core of Rad2 in complex with DNA substrate (complex IV)

Classification:

Hydrolase/DNA

Authors:

Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Studnicka, J., Nowotny, M.

Citation:

Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.231R free:0.284

NDB ID:

NA2971

PDB ID:

4Q0Z 

Release:

2014-08-27

Title:

The catalytic core of Rad2 in complex with DNA substrate (complex III)

Classification:

Hydrolase/DNA

Authors:

Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Studnicka, J., Nowotny, M.

Citation:

Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.398Å R work:0.178R free:0.235

NDB ID:

NA3059

PDB ID:

4QQW 

Release:

2014-08-27

Title:

Crystal structure of T. fusca Cas3

Classification:

Hydrolase/DNA

Authors:

Huo, Y., Nam, K.H., Ding, F., Lee, H., Wu, L., Xiao, Y., Farchione, M.D., Zhou, S., Rajashankar, K., Kurinov, I., Zhang, R., Ke, A.

Citation:

Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol. 21 pp.771 - 777 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.664Å R work:0.173R free:0.226

NDB ID:

NA3061

PDB ID:

4QQY 

Release:

2014-08-27

Title:

Crystal structure of T. fusca Cas3-ADP

Classification:

Hydrolase/DNA

Authors:

Huo, Y., Nam, K.H., Ding, F., Lee, H., Wu, L., Xiao, Y., Farchione, M.D., Zhou, S., Rajashankar, K., Kurinov, I., Zhang, R., Ke, A.

Citation:

Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol. 21 pp.771 - 777 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.17R free:0.235

NDB ID:

NA3062

PDB ID:

4QQZ 

Release:

2014-08-27

Title:

Crystal structure of T. fusca Cas3-AMPPNP

Classification:

Hydrolase/DNA

Authors:

Huo, Y., Nam, K.H., Ding, F., Lee, H., Wu, L., Xiao, Y., Farchione, M.D., Zhou, S., Rajashankar, K., Kurinov, I., Zhang, R., Ke, A.

Citation:

Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol. 21 pp.771 - 777 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.93Å R work:0.181R free:0.233