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As of 21-Jan-2015 number of released structures: 7315
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 4959   (Gallery view)

NDB ID:

4U7D

PDB ID:

4U7D 

Release:

2015-01-21

Title:

Structure of human RECQ-like helicase in complex with an oligonucleotide

Classification:

HYDROLASE/DNA

Authors:

Pike, A.C.W., Zhang, Y., Schnecke, C., Cooper, C.D.O., Von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Citation:

Structure of human RECQ-like helicase in complex with an oligonucleotide
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.205R free:0.248

NDB ID:

4WK8

PDB ID:

4WK8 

Release:

2015-01-21

Title:

FOXP3 forms a domain-swapped dimer to bridge DNA

Classification:

TRANSCRIPTION/DNA

Authors:

Chen, Y., Chen, C., Zhang, Z., Liu, C., Johnson, M.E., Espinoza, C.A., Edsall, L.E., Ren, B., Zhou, X.J., Grant, S.F., Wells, A.D., Chen, L.

Citation:

DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.4006Å R work:0.19R free:0.252

NDB ID:

4X0G

PDB ID:

4X0G 

Release:

2015-01-21

Title:

Structure of Bsg25A binding with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Dai, Q., Ren, A., Westholm, J.O., Duan, H., Patel, D.J., Lai, E.C.

Citation:

Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family.
Genes Dev. 29 pp.48 - 62 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2065Å R work:0.228R free:0.276

NDB ID:

4XIU

PDB ID:

4XIU 

Release:

2015-01-21

Title:

Binary complex structure of Klenow fragment of Taq DNA polymerase I707L mutant with DNA containing TTT overhang

Classification:

TRANSFERASE/DNA

Authors:

Wu, E.Y., Walsh, A.R., Materne, E.C., Hiltner, E.P., Zielinski, B., Miller, B.R., Mawby, L., Modeste, E., Parish, C.A., Barnes, W.M., Kermekchiev, M.B.

Citation:

A Conservative Isoleucine to Leucine Mutation Causes Major Rearrangements and Cold Sensitivity in KlenTaq1 DNA Polymerase.
Biochemistry pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.223R free:0.286

NDB ID:

NA2737

PDB ID:

4N56 

Release:

2015-01-21

Title:

Binary complex structure of Klenow fragment of Taq DNA polymerase I707L mutant (Cs3C KlenTaq) with DNA

Classification:

TRANSFERASE/DNA

Authors:

Wu, E.Y., Walsh, A.R., Materne, E.C., Hiltner, E.P., Zielinski, B., Miller, B.R., Mawby, L., Modeste, E., Parish, C.A., Barnes, W.M., Kermekchiev, M.B.

Citation:

A Conservative Isoleucine to Leucine Mutation Causes Major Rearrangements and Cold Sensitivity in KlenTaq1 DNA Polymerase.
Biochemistry pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.222R free:0.273

NDB ID:

NA2743

PDB ID:

4N5S 

Release:

2015-01-21

Title:

Ternary complex structure of Klenow fragment of Taq DNA polymerase I707L mutant (Cs3C KlenTaq) with DNA and ddCTP

Classification:

TRANSFERASE/DNA

Authors:

Wu, E.Y., Walsh, A.R., Materne, E.C., Hiltner, E.P., Zielinski, B., Miller, B.R., Mawby, L., Modeste, E., Parish, C.A., Barnes, W.M., Kermekchiev, M.B.

Citation:

A Conservative Isoleucine to Leucine Mutation Causes Major Rearrangements and Cold Sensitivity in KlenTaq1 DNA Polymerase.
Biochemistry pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.67Å R work:0.161R free:0.191

NDB ID:

NA3252

PDB ID:

4RKG 

Release:

2015-01-21

Title:

Structure of the MSL2 CXC domain bound with a non-specific (GC)6 DNA

Classification:

DNA binding protein/DNA

Authors:

Zheng, S., Villa, R., Wang, J., Feng, Y., Wang, J., Becker, P.B., Ye, K.

Citation:

Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation.
Genes Dev. 28 pp.2652 - 2662 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.226R free:0.314

NDB ID:

NA3253

PDB ID:

4RKH 

Release:

2015-01-21

Title:

Structure of the MSL2 CXC domain bound with a specific MRE sequence

Classification:

DNA binding protein/DNA

Authors:

Zheng, S., Villa, R., Wang, J., Feng, Y., Wang, J., Becker, P.B., Ye, K.

Citation:

Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation.
Genes Dev. 28 pp.2652 - 2662 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.197R free:0.254

NDB ID:

4TQR

PDB ID:

4TQR 

Release:

2015-01-14

Title:

Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTP

Classification:

TRANSFERASE/DNA

Authors:

Xu, W., Ouellette, A.M., Wawrzak, Z., Shriver, S., Anderson, S.M., Zhao, L.

Citation:

Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-induced DNA Replication Stalling.
Biochemistry pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.58Å R work:0.181R free:0.202

NDB ID:

4TQS

PDB ID:

4TQS 

Release:

2015-01-14

Title:

Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTP

Classification:

TRANSFERASE/DNA

Authors:

Xu, W., Ouellette, A.M., Wawrzak, Z., Shriver, S., Anderson, S.M., Zhao, L.

Citation:

Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-induced DNA Replication Stalling.
Biochemistry pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.06Å R work:0.228R free:0.289

NDB ID:

4U0Y

PDB ID:

4U0Y 

Release:

2015-01-14

Title:

Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA

Classification:

TRANSCRIPTION

Authors:

Fillenberg, S.B., Grau, F.C., Seidel, G., Muller, Y.A.

Citation:

Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.91Å R work:0.178R free:0.229

NDB ID:

4W9M

PDB ID:

4W9M 

Release:

2015-01-14

Title:

AMPPNP bound Rad50 in complex with dsDNA

Classification:

HYDROLASE

Authors:

Rojowska, A., Lammens, K., Seifert, F.U., Direnberger, C., Feldmann, H., Hopfner, K.P.

Citation:

Structure of the Rad50 DNA double-strand break repair protein in complex with DNA.
Embo J. 33 pp.2847 - 2859 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.214R free:0.27

NDB ID:

4WWC

PDB ID:

4WWC 

Release:

2015-01-14

Title:

Crystal structure of full length YvoA in complex with palindromic operator DNA

Classification:

TRANSCRIPTION

Authors:

Fillenberg, S.B., Grau, F.C., Seidel, G., Muller, Y.A.

Citation:

Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.903Å R work:0.229R free:0.278

NDB ID:

NA3161

PDB ID:

4R8U 

Release:

2015-01-14

Title:

S-SAD structure of DINB-DNA Complex

Classification:

TRANSFERASE/DNA

Authors:

Weinert, T., Olieric, V., Waltersperger, S., Panepucci, E., Chen, L., Zhang, H., Zhou, D., Rose, J., Ebihara, A., Kuramitsu, S., Li, D., Howe, N., Schnapp, G., Pautsch, A., Bargsten, K., Prota, A.E., Surana, P., Kottur, J., Nair, D.T., Basilico, F., Cecatiello, V., Pasqualato, S., Boland, A., Weichenrieder, O., Wang, B., Steinmetz, M.O., Caffrey, M., Wang, M.

Citation:

Fast native-SAD phasing for routine macromolecular structure determination
Nat.Methods pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.18R free:0.219

NDB ID:

NA2976

PDB ID:

4PZQ 

Release:

2015-01-07

Title:

Crystal Structure of CCG DNA repeats

Classification:

DNA

Authors:

Chen, Y.W., Jhan, C.R., Neidle, S., Hou, M.H.

Citation:

Structural basis for the identification of an i-motif tetraplex core with a parallel-duplex junction as a structural motif in CCG triplet repeats
Angew.Chem.Int.Ed.Engl. 53 pp.10682 - 10686 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.24Å R work:0.234R free:0.256

NDB ID:

4TYN

PDB ID:

4TYN 

Release:

2014-12-31

Title:

DEAD-box helicase Mss116 bound to ssDNA and ADP-BeF

Classification:

HYDROLASE/DNA

Authors:

Mallam, A.L., Sidote, D.J., Lambowitz, A.M.

Citation:

Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife 4 pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.959Å R work:0.196R free:0.244

NDB ID:

4WZW

PDB ID:

4WZW 

Release:

2014-12-31

Title:

Crystal structure of human Puf-A in complex with DNA

Classification:

DNA Binding Protein, RNA Binding Protein/DNA

Authors:

Qiu, C., McCann, K.L., Wine, R.N., Baserga, S.J., Hall, T.M.

Citation:

A divergent Pumilio repeat protein family for pre-rRNA processing and mRNA localization.
Proc.Natl.Acad.Sci.USA 111 pp.18554 - 18559 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9516Å R work:0.221R free:0.265

NDB ID:

2MJJ

PDB ID:

2MJJ 

Release:

2014-12-24

Title:

A tetrahelical DNA fold adopted by alternating GGG and GCG tracts

Classification:

DNA

Authors:

Kocman, V., Plavec, J.

Citation:

A tetrahelical DNA fold adopted by tandem repeats of alternating GGG and GCG tracts.
Nat Commun 5 pp.5831 - 5831 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2242

PDB ID:

4IZR 

Release:

2014-12-24

Title:

Lambda-[Ru(bpy)2(dppz)]2+ with a short substituted DNA sequence

Classification:

DNA

Authors:

Hall, J.P., Lincoln, P., Cardin, D.J., Cardin, C.J.

Citation:

The effect of halogen substitution on the binding of polypyridyl ruthenium complexes to DNA
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.88Å R work:0.2R free:0.262

NDB ID:

NA2833

PDB ID:

4NZX 

Release:

2014-12-24

Title:

Crystal structure of d(GTGGAATGGAC)

Classification:

DNA

Authors:

Hou, M.H., Lo, Y.S., Tseng, W.H.

Citation:

Crystal Structure of d(GTGGAATGGAC)
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.58Å R work:0.268R free:0.308

NDB ID:

NA3174

PDB ID:

4RD5 

Release:

2014-12-24

Title:

Crystal structure of R.NgoAVII restriction endonuclease B3 domain with cognate DNA

Classification:

HYDROLASE/DNA

Authors:

Tamulaitiene, G., Silanskas, A., Grazulis, S., Zaremba, M., Siksnys, V.

Citation:

Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
Nucleic Acids Res. 42 pp.14022 - 14030 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.213R free:0.25

NDB ID:

NA3184

PDB ID:

4REA 

Release:

2014-12-24

Title:

A Nuclease DNA complex

Classification:

Hydrolase/DNA

Authors:

Zhao, Q., Xue, X., Longerich, S., Sung, P., Xiong, Y.

Citation:

Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer.
Nat Commun 5 pp.5726 - 5726 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.81Å R work:0.242R free:0.276

NDB ID:

NA3185

PDB ID:

4RDM 

Release:

2014-12-24

Title:

Crystal structure of R.NgoAVII restriction endonuclease B3 domain with cognate DNA

Classification:

HYDROLASE/DNA

Authors:

Tamulaitiene, G., Silanskas, A., Grazulis, S., Zaremba, M., Siksnys, V.

Citation:

Crystal structure of the R-protein of the multisubunit ATP-dependent restriction endonuclease NgoAVII.
Nucleic Acids Res. 42 pp.14022 - 14030 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.217R free:0.258

NDB ID:

NA3186

PDB ID:

4REB 

Release:

2014-12-24

Title:

Structural Insights into 5' Flap DNA Unwinding and Incision by the Human FAN1 Dimer

Classification:

Hydrolase/DNA

Authors:

Zhao, Q., Xue, X., Longerich, S., Sung, P., Xiong, Y.

Citation:

Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer.
Nat Commun 5 pp.5726 - 5726 2014

Experiment:

X-RAY DIFFRACTION Resolution:4.2Å R work:0.23R free:0.262

NDB ID:

NA3187

PDB ID:

4REC 

Release:

2014-12-24

Title:

A nuclease-DNA complex form 3

Classification:

Hydrolase/DNA

Authors:

Zhao, Q., Xue, X., Longerich, S., Sung, P., Xiong, Y.

Citation:

Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer.
Nat Commun 5 pp.5726 - 5726 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.215R free:0.254

NDB ID:

2MNA

PDB ID:

2MNA 

Release:

2014-12-17

Title:

The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Gamsjaeger, R., Kariawasam, R., Gimenez, A.X., Touma, C., McIlwain, E., Bernardo, R.E., Shepherd, N.E., Ataide, S.F., Dong, Q., Richard, D.J., White, M.F., Cubeddu, L.

Citation:

The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus
Biochem.J. 465 pp.337 - 346 2015

Experiment:

SOLUTION NMR

NDB ID:

NA2835

PDB ID:

4O0I 

Release:

2014-12-17

Title:

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA

Classification:

TRANSFERASE/DNA

Authors:

Jiang, S., Gan, J., Sun, H., Huang, Z.

Citation:

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.203Å R work:0.176R free:0.227

NDB ID:

NA3033

PDB ID:

4QJU 

Release:

2014-12-17

Title:

Crystal structure of DNA-bound nucleoid associated protein, SAV1473

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kim, D.-H., Im, H., Jee, J.-G., Jang, S.-B., Yoon, H.-J., Kwon, A.-R., Kang, S.-M., Lee, B.-J.

Citation:

beta-Arm flexibility of HU from Staphylococcus aureus dictates the DNA-binding and recognition mechanism
Acta Crystallogr.,Sect.D 70 pp.3273 - 3289 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.16Å R work:0.187R free:0.248

NDB ID:

NA3326

PDB ID:

4D6N 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.182R free:0.217

NDB ID:

NA3327

PDB ID:

4D6O 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.185R free:0.22

NDB ID:

NA3329

PDB ID:

4UN8 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MN (STATE 2)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.178R free:0.223

NDB ID:

NA3330

PDB ID:

4UNA 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 2 DAYS INCUBATION IN 5MM MN (STATE 4)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.189R free:0.219

NDB ID:

NA3331

PDB ID:

4UNB 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 6 DAYS INCUBATION IN 5MM MN (STATE 5)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.177R free:0.221

NDB ID:

NA3332

PDB ID:

4UNC 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 8 DAYS INCUBATION IN 5MM MN (STATE 6)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.184R free:0.224

NDB ID:

NA3333

PDB ID:

4UT0 

Release:

2014-12-17

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.182R free:0.228

NDB ID:

4X23

PDB ID:

4X23 

Release:

2014-12-10

Title:

CRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE

Classification:

structural protein/dna

Authors:

Kato, H., Jiang, J.S., Zhou, B.R., Rozendaal, M., Feng, H., Ghirlando, R., Xiao, T.S., Straight, A.F., Bai, Y.

Citation:

A conserved mechanism for centromeric nucleosome recognition by centromere protein CENP-C.
Science 340 pp.1110 - 1113 2013

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.236R free:0.285

NDB ID:

NA3051

PDB ID:

4QKK 

Release:

2014-12-10

Title:

Crystal structure of an oligonucleotide containing 5-formylcytosine

Classification:

DNA

Authors:

Raiber, E.-A., Murat, P., Chirgadze, D.Y., Beraldi, D., Luisi, B.F., Balasubramanian, S.

Citation:

5-Formylcytosine alters the structure of the DNA double helix.
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.14R free:0.159

NDB ID:

NA3210

PDB ID:

4RI9 

Release:

2014-12-10

Title:

FAN1 Nuclease bound to 5' phosphorylated p(dT)/3'(dT-dT-dT-dT-dT-dT-dT-dT) double flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.226R free:0.266

NDB ID:

NA3255

PDB ID:

4RIA 

Release:

2014-12-10

Title:

FAN1 Nuclease bound to 5' phosphorylated nicked DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.224R free:0.267

NDB ID:

2MB2

PDB ID:

2MB2 

Release:

2014-12-03

Title:

parallel-stranded G-quadruplex in DNA poly-G stretches

Classification:

DNA

Authors:

Sengar, A., Heddi, B., Phan, A.T.

Citation:

Formation of g-quadruplexes in poly-g sequences: structure of a propeller-type parallel-stranded g-quadruplex formed by a g15 stretch.
Biochemistry 53 pp.7718 - 7723 2014

Experiment:

SOLUTION NMR

NDB ID:

NA2986

PDB ID:

3WTP 

Release:

2014-12-03

Title:

Crystal Structure of the heterotypic nucleosome containing human CENP-A and H3.3

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Arimura, Y., Shirayama, K., Horikoshi, N., Fujita, R., Taguchi, H., Kagawa, W., Fukagawa, T., Almouzni, G., Kurumizaka, H.

Citation:

Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3
Sci Rep 4 pp.7115 - 7115 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.67Å R work:0.228R free:0.269

NDB ID:

NA3209

PDB ID:

4RI8 

Release:

2014-12-03

Title:

FAN1 Nuclease bound to 5' phosphorylated p(dG)/3'(dT-dT-dT-dT) double flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.22R free:0.254

NDB ID:

NA3211

PDB ID:

4RIC 

Release:

2014-12-03

Title:

FAN1 Nuclease bound to 5' hydroxyl (dT-dT) single flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.222R free:0.257

NDB ID:

NA3212

PDB ID:

4RIB 

Release:

2014-12-03

Title:

FAN1 Nuclease bound to 5' phosphorylated p(dT) single flap DNA

Classification:

hydrolase/dna

Authors:

Wang, R., Persky, N.S., Yoo, B., Ouerfelli, O., Smogorzewska, A., Elledge, S.J., Pavletich, N.P.

Citation:

DNA repair. Mechanism of DNA interstrand cross-link processing by repair nuclease FAN1.
Science 346 pp.1127 - 1130 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.225R free:0.265

NDB ID:

NA3321

PDB ID:

4UQG 

Release:

2014-12-03

Title:

A new bio-isosteric base pair based on reversible bonding

Classification:

TRANSFERASE/DNA

Authors:

Tomas-Gamasa, M., Serdjukow, S., Su, M., Muller, M., Carell, T.

Citation:

""Post-It"" Type Connected DNA Created with a Reversible Covalent Cross-Link.
Angew.Chem.Int.Ed.Engl. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.178R free:0.211

NDB ID:

NA3328

PDB ID:

4UN7 

Release:

2014-12-03

Title:

THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA BEFORE INCUBATION IN 5MM MN (STATE 1)

Classification:

HYDROLASE/DNA

Authors:

Molina, R., Stella, S., Redondo, P., Gomez, H., Marcaida, M.J., Orozco, M., Prieto, J., Montoya, G.

Citation:

Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease
Nat.Struct.Mol.Biol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.177R free:0.231

NDB ID:

4TU7

PDB ID:

4TU7 

Release:

2014-11-26

Title:

Structure of U2AF65 D231V variant with BrU5 DNA

Classification:

RNA binding Protein/DNA

Authors:

Agrawal, A.A., McLaughlin, K.J., Jenkins, J.L., Kielkopf, C.L.

Citation:

Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA.
Proc.Natl.Acad.Sci.USA 111 pp.17420 - 17425 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.087Å R work:0.174R free:0.223

NDB ID:

4TU8

PDB ID:

4TU8 

Release:

2014-11-26

Title:

STRUCTURE OF U2AF65 VARIANT WITH BRU5A6 DNA

Classification:

RNA binding protein/DNA

Authors:

Agrawal, A.A., McLaughlin, K.J., Jenkins, J.L., Kielkopf, C.L.

Citation:

Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA.
Proc.Natl.Acad.Sci.USA 111 pp.17420 - 17425 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.918Å R work:0.177R free:0.218

NDB ID:

4TU9

PDB ID:

4TU9 

Release:

2014-11-26

Title:

STRUCTURE OF U2AF65 VARIANT WITH BRU5G6 DNA

Classification:

RNA BINDING PROTEIN/DNA

Authors:

Agrawal, A.A., McLaughlin, K.J., Jenkins, J.L., Kielkopf, C.L.

Citation:

Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA.
Proc.Natl.Acad.Sci.USA 111 pp.17420 - 17425 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.992Å R work:0.187R free:0.234

NDB ID:

4U92

PDB ID:

4U92 

Release:

2014-11-26

Title:

Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad

Classification:

DNA

Authors:

Zhang, D., Huang, T., Lukeman, P.S., Paukstelis, P.J.

Citation:

Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad.
Nucleic Acids Res. 42 pp.13422 - 13429 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.129R free:0.144