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As of 23-Sep-2020 number of released structures: 10967
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 7441  Download results as an excel file       Gallery view

NDB ID:

6UDN

PDB ID:

6UDN 

Release:

2020-09-23

Title:

Crystal Structure of a Self-Assembling DNA Scaffold Containing TA Sticky Ends and Rhombohedral Symmetry

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.602Å R work:0.233R free:0.255

NDB ID:

6UEF

PDB ID:

6UEF 

Release:

2020-09-23

Title:

Crystal Structure of a Self-Assembling DNA Scaffold Containing Sequence Modifications to Attempt to Disrupt Crystal Contacts in a Rhombohedral Lattice.

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.235R free:0.255

NDB ID:

6W0M

PDB ID:

6W0M 

Release:

2020-09-23

Title:

Human 8-oxoguanine glycosylase crosslinked with oxoG lesion containing DNA

Classification:

Lyase/DNA

Authors:

Shigdel, U.K., Ovchinnikov, V., Lee, S.J., Shih, J.A., Karplus, M., Nam, K., Verdine, G.L.

Citation:

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun 11 pp.4437 - 4437 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.37Å R work:0.196R free:0.265

NDB ID:

6W0R

PDB ID:

6W0R 

Release:

2020-09-23

Title:

Human 8-oxoguanine glycosylase interrogating fully intrahelical undamaged DNA

Classification:

Lyase/DNA

Authors:

Shigdel, U.K., Ovchinnikov, V., Lee, S.J., Shih, J.A., Karplus, M., Nam, K., Verdine, G.L.

Citation:

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun 11 pp.4437 - 4437 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.208R free:0.249

NDB ID:

6W13

PDB ID:

6W13 

Release:

2020-09-23

Title:

Human 8-oxoguanine glycosylase interrogating fully intrahelical oxoG lesion DNA

Classification:

Lyase/DNA

Authors:

Shigdel, U.K., Ovchinnikov, V., Lee, S.J., Shih, J.A., Karplus, M., Nam, K., Verdine, G.L.

Citation:

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun 11 pp.4437 - 4437 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.38Å R work:0.213R free:0.271

NDB ID:

6M3D

PDB ID:

6M3D 

Release:

2020-09-16

Title:

X-ray crystal structure of tandemly connected engrailed homeodomains (EHD) with R53A mutations and DNA complex

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Sunami, T., Hirano, Y., Tamada, T., Kono, H.

Citation:

Structural basis for designing an array of engrailed homeodomains.
Acta Crystallogr D Struct Biol 76 pp.824 - 833 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.188R free:0.235

NDB ID:

6TC9

PDB ID:

6TC9 

Release:

2020-09-16

Title:

Crystal structure of MutM from Neisseria meningitidis

Classification:

DNA BINDING PROTEIN

Authors:

Landova, B., Silhan, J.

Citation:

Conformational changes of DNA repair glycosylase MutM triggered by DNA binding.
Febs Lett. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.175Å R work:0.238R free:0.28

NDB ID:

6TUW

PDB ID:

6TUW 

Release:

2020-09-16

Title:

human XPG-DNA, Complex 1

Classification:

DNA BINDING PROTEIN

Authors:

Gonzalez-Corrochano, R., Ruiz, F.M., Taylor, N.M.I., Huecas, S., Drakulic, S., Spinola-Amilibia, M., Fernandez-Tornero, C.

Citation:

The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair.
Nucleic Acids Res. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.265R free:0.293

NDB ID:

6TUX

PDB ID:

6TUX 

Release:

2020-09-16

Title:

human XPG-DNA, Complex 2

Classification:

DNA BINDING PROTEIN

Authors:

Gonzalez-Corrochano, R., Ruiz, F.M., Taylor, N.M.I., Huecas, S., Drakulic, S., Spinola-Amilibia, M., Fernandez-Tornero, C.

Citation:

The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair.
Nucleic Acids Res. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.246R free:0.302

NDB ID:

6U9Q

PDB ID:

6U9Q 

Release:

2020-09-16

Title:

Crystal Structure Analysis of DNA-BCL11A Znf domain complex

Classification:

TRANSCRIPTION/DNA

Authors:

Seo, H.-S., Dhe-Paganon, S.

Citation:

Crystal Structure Analysis of TAF1 Bromodomain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.83Å R work:0.174R free:0.194

NDB ID:

6UAL

PDB ID:

6UAL 

Release:

2020-09-16

Title:

A Self-Assembling DNA Crystal Scaffold with Cavities Containing 3 Helical Turns per Edge

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:4.514Å R work:0.197R free:0.242

NDB ID:

6M0V

PDB ID:

6M0V 

Release:

2020-09-09

Title:

Crsytal structure of streptococcus thermophilus Cas9 in complex with the GGAA PAM

Classification:

HYDROLASE/DNA/RNA

Authors:

Zhang, Y., Zhang, H., Xu, X., Wang, Y., Chen, W., Wang, Y., Wu, Z., Tang, N., Wang, Y., Zhao, S., Gan, J., Ji, Q.

Citation:

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.213R free:0.256

NDB ID:

6M0W

PDB ID:

6M0W 

Release:

2020-09-09

Title:

Crystal structure of Streptococcus thermophilus Cas9 in complex with the AGAA PAM

Classification:

HYDROLASE/DNA/RNA

Authors:

Zhang, Y., Zhang, H., Xu, X., Wang, Y., Chen, W., Wang, Y., Wu, Z., Tang, N., Wang, Y., Zhao, S., Gan, J., Ji, Q.

Citation:

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.76Å R work:0.219R free:0.259

NDB ID:

6M0X

PDB ID:

6M0X 

Release:

2020-09-09

Title:

Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM

Classification:

DNA BINDING PROTEIN

Authors:

Zhang, Y., Zhang, H., Xu, X., Wang, Y., Chen, W., Wang, Y., Wu, Z., Tang, N., Wang, Y., Zhao, S., Gan, J., Ji, Q.

Citation:

Catalytic-state structure and engineering of Streptococcus thermophilus Cas9
Nat Catal pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.561Å R work:0.225R free:0.255

NDB ID:

6U6B

PDB ID:

6U6B 

Release:

2020-09-09

Title:

Structure of human DNA polymerase beta misinserting dAMPNPP opposite the 5'G of the cisplatin Pt-GG intrastrand crosslink with Manganese in the active site

Classification:

TRANSFERASE/DNA

Authors:

Ouzon-Shubeita, H., Vilas, C.K., Lee, S.

Citation:

Structures of the Mutagenic Bypass of the Major Cisplatin-DNA Lesion by Human DNA Polymerase Beta Reveal Insights into Cisplatin-Induced Mutagenesis
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.108Å R work:0.222R free:0.267

NDB ID:

6XWG

PDB ID:

6XWG 

Release:

2020-09-09

Title:

Crystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound to the Human RARb2 DR5 Response Element

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Bourguet, M., Przybilla, F., Peluso-Iltis, C., Poussin-Courmontagne, P., Mely, Y., Cianferani, S., Jeffries, C.M., Svergun, D.I., Rochel, N.

Citation:

Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR
Nucleic Acids Res. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.19R free:0.207

NDB ID:

6XWH

PDB ID:

6XWH 

Release:

2020-09-09

Title:

Crystal Structure of the Human RXR DNA-Binding Domain Homodimer Bound to the Human Hoxb13 DR0 Response Element

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Bourguet, M., Przybilla, F., Peluso-Iltis, C., Poussin-Courmontagne, P., Mely, Y., Cianferani, S., Jeffries, C.M., Svergun, D.I., Rochel, N.

Citation:

Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR
Nucleic Acids Res. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.185R free:0.224

NDB ID:

6YCQ

PDB ID:

6YCQ 

Release:

2020-09-09

Title:

Crystal structure of the DNA binding domain of Arabidopsis thaliana Auxin Response Factor 1 (AtARF1) in complex with High Affinity DNA

Classification:

TRANSCRIPTION

Authors:

Freire-Rios, A., Tanaka, K., Crespo, I., van Wijk, E., Sizentsova, Y., Levitsky, V., Lindhoud, S., Fontana, M., Hohlbein, J., Boer, D.R., Mironova, V., Weijers, D.

Citation:

Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.171R free:0.199

NDB ID:

7C9O

PDB ID:

7C9O 

Release:

2020-09-09

Title:

Crystal structure of DNA-bound CCT/NF-YB/YC complex (HD1CCT/GHD8/OsNF-YC2)

Classification:

TRANSCRIPTION

Authors:

Shen, C., Liu, H., Guan, Z., Junjie, Y., Ting, Z., Yan, W., Wu, C., Zhang, Q., Yin, P., Xing, Y.

Citation:

Structural Insight into DNA Recognition by CCT/NF-YB/YC Complexes in Plant Photoperiodic Flowering.
Plant Cell pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.199R free:0.225

NDB ID:

6L8E

PDB ID:

6L8E 

Release:

2020-09-02

Title:

Crystal structure of heterohexameric YoeB-YefM complex bound to 26bp-DNA

Classification:

ANTITOXIN/TOXIN/DNA

Authors:

Xue, L., Yue, J., Ke, J., Khan, M.H., Wen, W., Sun, B., Zhu, Z., Niu, L.

Citation:

Distinct oligomeric structures of the YoeB-YefM complex provide insights into the conditional cooperativity of type II toxin-antitoxin system.
Nucleic Acids Res. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.197R free:0.222

NDB ID:

6U6X

PDB ID:

6U6X 

Release:

2020-09-02

Title:

Human SAMHD1 bound to deoxyribo(C*G*C*C*T)-oligonucleotide

Classification:

HYDROLASE

Authors:

Yu, C.H., Bhattacharya, A., Wang, Z., Taylor, A.B., Persaud, M., Bulnes-Ramos, A., Xu, J., Selyutina, A., Martinez-Lopez, A., Demeler, B., Kim, B., Diaz-Griffero, F., Ivanov, D.N.

Citation:

The GpsN modification enhances affinity of nucleic acid binding by SAMHD1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.58Å R work:0.195R free:0.236

NDB ID:

6U6Z

PDB ID:

6U6Z 

Release:

2020-09-02

Title:

Human SAMHD1 bound to deoxyribo(TG*TTCA)-oligonucleotide

Classification:

HYDROLASE

Authors:

Yu, C.H., Bhattacharya, A., Wang, Z., Taylor, A.B., Persaud, M., Bulnes-Ramos, A., Xu, J., Selyutina, A., Martinez-Lopez, A., Demeler, B., Kim, B., Diaz-Griffero, F., Ivanov, D.N.

Citation:

The GpsN modification enhances affinity of nucleic acid binding by SAMHD1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.173R free:0.205

NDB ID:

6UEO

PDB ID:

6UEO 

Release:

2020-09-02

Title:

Structure of A. thaliana TBP-AC mismatch DNA site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Afek, A., Shi, H., Rangadurai, A., Sahay, H., Senitzki, A., Xhani, S., Fang, M., Salinas, R., Mielko, Z., Pufall, M.A., Poon, G.M.K., Haran, T.E., Schumacher, M.A., Al-Hashimi, H.M., Gordan, R.

Citation:

DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.213R free:0.249

NDB ID:

6UEP

PDB ID:

6UEP 

Release:

2020-09-02

Title:

Structure of A. thaliana TBP bound to a DNA site with a C-C mismatch

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Afek, A., Shi, H., Rangadurai, A., Sahay, H., Senitzki, A., Xhani, S., Fang, M., Salinas, R., Mielko, Z., Pufall, M.A., Poon, G.M.K., Haran, T.E., Schumacher, M.A., Al-Hashimi, H.M., Gordan, R.

Citation:

DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.171R free:0.192

NDB ID:

6UEQ

PDB ID:

6UEQ 

Release:

2020-09-02

Title:

Structure of TBP bound to C-C mismatch containing TATA site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Afek, A., Shi, H., Rangadurai, A., Sahay, H., Senitzki, A., Xhani, S., Fang, M., Salinas, R., Mielko, Z., Pufall, M.A., Poon, G.M.K., Haran, T.E., Schumacher, M.A., Al-Hashimi, H.M., Gordan, R.

Citation:

DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.211R free:0.248

NDB ID:

6UER

PDB ID:

6UER 

Release:

2020-09-02

Title:

Crystal form 2: Structure of TBP bound to C-C mismatch at pH 7

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Afek, A., Shi, H., Rangadurai, A., Sahay, H., Senitzki, A., Xhani, S., Fang, M., Salinas, R., Mielko, Z., Pufall, M.A., Poon, G.M.K., Haran, T.E., Schumacher, M.A., Al-Hashimi, H.M., Gordan, R.

Citation:

DNA mismatches reveal conformational penalties in protein-DNA recognition.
Nature pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.199R free:0.237

NDB ID:

6YCV

PDB ID:

6YCV 

Release:

2020-09-02

Title:

2'-F-riboguanosine and LNA modified hybrid type G-quadruplex with V-loop

Classification:

DNA

Authors:

Haase, L., Weisz, K.

Citation:

Locked nucleic acid building blocks as versatile tools for advanced G-quadruplex design.
Nucleic Acids Res. pp. - 2020

Experiment:

SOLUTION NMR

NDB ID:

6YEP

PDB ID:

6YEP 

Release:

2020-09-02

Title:

LNA modified G-quadruplex with flipped G-tract and central tetrad

Classification:

DNA

Authors:

Haase, L., Weisz, K.

Citation:

Locked nucleic acid building blocks as versatile tools for advanced G-quadruplex design.
Nucleic Acids Res. pp. - 2020

Experiment:

SOLUTION NMR

NDB ID:

6LRD

PDB ID:

6LRD 

Release:

2020-08-26

Title:

Structure of RecJ complexed with a 5'-P-dSpacer-modified ssDNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Cheng, K., Xu, Y., Chen, X., Lu, H., He, Y., Wang, L., Hua, Y.

Citation:

Participation of RecJ in the base excision repair pathway of Deinococcus radiodurans.
Nucleic Acids Res. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.90134Å R work:0.208R free:0.233

NDB ID:

6U2O

PDB ID:

6U2O 

Release:

2020-08-26

Title:

Structure of human DNA polymerase beta misinserting dAMPNPP opposite the 5'G of the cisplatin Pt-GG intrastrand crosslink

Classification:

TRANSFERASE/DNA

Authors:

Ouzon-Shubeita, H., Vilas, C.K., Lee, S.

Citation:

Structures of the Mutagenic Bypass of the Major Cisplatin-DNA Lesion by Human DNA Polymerase Beta Reveal Insights into Cisplatin-Induced Mutagenesis
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.201R free:0.248

NDB ID:

6U40

PDB ID:

6U40 

Release:

2020-08-26

Title:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry

Classification:

DNA

Authors:

Simmons, C.R., MacCulloch, T., Stephanopoulos, N., Yan, H.

Citation:

Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.702Å R work:0.238R free:0.254

NDB ID:

6UTV

PDB ID:

6UTV 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 6-nt RNA (""Fresh"" crystal soaked with CTP, UTP, GTP, and ddATP for 150 seconds)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.45Å R work:0.281R free:0.347

NDB ID:

6UTW

PDB ID:

6UTW 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 4-nt RNA (""Fresh"" crystal)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.854Å R work:0.268R free:0.329

NDB ID:

6UTX

PDB ID:

6UTX 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with an empty bubble (""Old"" crystal)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.05Å R work:0.279R free:0.349

NDB ID:

6UTY

PDB ID:

6UTY 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a mismatching CTP (""Old"" crystal soaked with CTP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.15Å R work:0.301R free:0.37

NDB ID:

6UTZ

PDB ID:

6UTZ 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 6-nt RNA (""Fresh"" crystal soaked with CTP and UTP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.803Å R work:0.273R free:0.343

NDB ID:

6UU0

PDB ID:

6UU0 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching GTP (""Fresh"" crystal soaked with GTP for 1 hour)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.9Å R work:0.313R free:0.367

NDB ID:

6UU1

PDB ID:

6UU1 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 4-nt RNA and a CTP (""Fresh"" crystal soaked with CTP, GTP, and ddTTP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.097Å R work:0.332R free:0.395

NDB ID:

6UU2

PDB ID:

6UU2 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with 3-nt RNA (""Old"" crystal soaked with GTP and ATP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.404Å R work:0.296R free:0.362

NDB ID:

6UU3

PDB ID:

6UU3 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 4-nt RNA and a CTP (""Old"" crystal soaked with GTP, ATP, CTP, and ddTTP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.002Å R work:0.303R free:0.38

NDB ID:

6UU4

PDB ID:

6UU4 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 3-nt RNA (""old"" crystal soaked with GTP and dinucleotide GpA for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.305Å R work:0.304R free:0.363

NDB ID:

6UU5

PDB ID:

6UU5 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 6-nt RNA (""Old"" crystal soaked with GTP, UTP, CTP, and dinucleotide GpA for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:5.403Å R work:0.295R free:0.362

NDB ID:

6UU6

PDB ID:

6UU6 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 4-nt RNA and a UTP (""Old"" crystal soaked with UTP, ddCTP, and dinucleotide ApG for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.201Å R work:0.342R free:0.388

NDB ID:

6UU7

PDB ID:

6UU7 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 6-nt RNA and an NTP (""Old"" crystal soaked with UTP, CTP, ddGTP, and dinucleotide ApG for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.4Å R work:0.344R free:0.389

NDB ID:

6UU8

PDB ID:

6UU8 

Release:

2020-08-26

Title:

E. coli mutant sigma-S transcription initiation complex with a 7-nt RNA (""Fresh"" mutant crystal soaked with GTP, UTP, and CTP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.4Å R work:0.357R free:0.379

NDB ID:

6UU9

PDB ID:

6UU9 

Release:

2020-08-26

Title:

E. coli mutant sigma-S transcription initiation complex with an 8-nt RNA (""Fresh"" mutant crystal soaked with GTP, UTP, CTP, and ddATP for 30 minutes)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:5.4Å R work:0.314R free:0.362

NDB ID:

6UUA

PDB ID:

6UUA 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a mismatching CTP (""Fresh"" crystal soaked with CTP for 2 hours)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.002Å R work:0.301R free:0.364

NDB ID:

6UUB

PDB ID:

6UUB 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a mismatching UTP (""Fresh"" crystal soaked with UTP for 2 hours)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.955Å R work:0.302R free:0.374

NDB ID:

6UUC

PDB ID:

6UUC 

Release:

2020-08-26

Title:

E. coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching ATP (""Fresh"" crystal soaked with ATP for 2 hours)

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Zuo, Y., De, S., Feng, Y., Steitz, T.A.

Citation:

Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation.
Iscience 23 pp.101445 - 101445 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.096Å R work:0.321R free:0.379

NDB ID:

6ZMN

PDB ID:

6ZMN 

Release:

2020-08-26

Title:

Crystal structure of the Smad3-Smad5 MH1 domain chimera bound to the GGCGC site

Classification:

SIGNALING PROTEIN

Authors:

Pluta, R., Macias, M.J.

Citation:

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.333Å R work:0.209R free:0.252