A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2015 number of released structures: 7430
Search for released structures

DNA Search Options:

Polymer

All
DNA Only
Protein DNA Complexes
Drug DNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

Protein Function

All
Enzymes
Structural
Regulatory
Other

Structural Features

All
Single Stranded
A DNA
B DNA
Z DNA
Other Double
       Helical Structures
Triple helices
Quadruple helices

Experimental Method

All
XRAY
NMR

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 5031  Download results as an excel file       Gallery view

NDB ID:

4PCZ

PDB ID:

4PCZ 

Release:

2015-04-01

Title:

Crystal structure of a complex between R247G LlFPG mutant and a THF containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.156R free:0.181

NDB ID:

4PD2

PDB ID:

4PD2 

Release:

2015-04-01

Title:

Crystal structure of a complex between a C248GH LlFpg mutant and a THF containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.152R free:0.178

NDB ID:

4PDG

PDB ID:

4PDG 

Release:

2015-04-01

Title:

Crystal structure of a complex between an inhibited LlFpg and a THF containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.163R free:0.192

NDB ID:

4PDI

PDB ID:

4PDI 

Release:

2015-04-01

Title:

Crystal structure of a complex between an inhibited LlFpg and a N7-Benzyl-Fapy-dG containing DNA

Classification:

Hydrolase/DNA

Authors:

Biela, A., Coste, F., Culard, F., Guerin, M., Goffinont, S., Gasteiger, K., Ciesla, J., Winczura, A., Kazimierczuk, Z., Gasparutto, D., Carell, T., Tudek, B., Castaing, B.

Citation:

Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization.
Nucleic Acids Res. 42 pp.10748 - 10761 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.159R free:0.19

NDB ID:

4U9M

PDB ID:

4U9M 

Release:

2015-04-01

Title:

Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds

Classification:

DNA

Authors:

Acosta-Reyes, F.J., Alechaga, E., Subirana, J.A., Campos, J.L.

Citation:

Structure of the DNA Duplex d(ATTAAT)2 with Hoogsteen Hydrogen Bonds.
Plos One 10 pp.e0120241 - e0120241 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.13Å R work:0.145R free:0.199

NDB ID:

4P1D

PDB ID:

4P1D 

Release:

2015-03-18

Title:

Structure of the complex of a bimolecular human telomeric DNA with Coptisine

Classification:

DNA

Authors:

Ferraroni, M., Bazzicalupi, C., Gratteri, P., Bilia, A.R., Sissi, C.

Citation:

Crystal Structure of the complex of a bimolecular human telomeric DNA with Coptisine
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.231R free:0.258

NDB ID:

4X0P

PDB ID:

4X0P 

Release:

2015-03-18

Title:

Ternary complex of human DNA polymerase theta C-terminal domain binding ddATP opposite a tetrahydrofuran AP site analog

Classification:

Transferase/DNA

Authors:

Zahn, K.E., Averill, A.M., Aller, P., Wood, R.D., Doublie, S.

Citation:

Human DNA polymerase theta grasps the primer terminus to mediate DNA repair.
Nat.Struct.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.911Å R work:0.24R free:0.301

NDB ID:

4X0Q

PDB ID:

4X0Q 

Release:

2015-03-18

Title:

Ternary complex of human DNA polymerase theta C-terminal domain binding ddGTP opposite dCMP

Classification:

Transferase/DNA

Authors:

Zahn, K.E., Averill, A.M., Aller, P., Wood, R.D., Doublie, S.

Citation:

Human DNA polymerase theta grasps the primer terminus to mediate DNA repair.
Nat.Struct.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.9Å R work:0.257R free:0.316

NDB ID:

NA3363

PDB ID:

4USG 

Release:

2015-03-18

Title:

Crystal structure of PC4 W89Y mutant complex with DNA

Classification:

TRANSCRIPTION

Authors:

Huang, J., Zhao, Y., Liu, H., Huang, D., Cheng, X., Zhao, W., Taylor, I.A., Liu, J., Peng, Y.L.

Citation:

Substitution of Tryptophan 89 with Tyrosine Switches the DNA Binding Mode of Pc4.
Sci.Rep. 5 pp.8789 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.973Å R work:0.185R free:0.211

NDB ID:

4TMU

PDB ID:

4TMU 

Release:

2015-03-11

Title:

Crystal structure of RecQ catalytic core from C. sakazakii bound to DNA

Classification:

Hydrolase/DNA

Authors:

Manthei, K.A., Keck, J.L.

Citation:

Structural mechanisms of DNA binding and unwinding in bacterial RecQ helicases
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.178R free:0.232

NDB ID:

4X4B

PDB ID:

4X4B 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 2.1 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.204R free:0.261

NDB ID:

4X4C

PDB ID:

4X4C 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 6.2 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.279

NDB ID:

4X4D

PDB ID:

4X4D 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 10.3 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.234R free:0.282

NDB ID:

4X4E

PDB ID:

4X4E 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 14.4 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.239R free:0.284

NDB ID:

4X4F

PDB ID:

4X4F 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 20.6 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.236R free:0.281

NDB ID:

4X4G

PDB ID:

4X4G 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 26.8 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.274

NDB ID:

4X4H

PDB ID:

4X4H 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 35.7 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.245R free:0.292

NDB ID:

4X4I

PDB ID:

4X4I 

Release:

2015-03-11

Title:

RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 44.6 MGy

Classification:

GENE REGULATION

Authors:

Bury, C., Garman, E.F., Ginn, H.M., Ravelli, R.B., Carmichael, I., Kneale, G., McGeehan, J.E.

Citation:

Radiation damage to nucleoprotein complexes in macromolecular crystallography.
J.Synchrotron Radiat. 22 pp.213 - 224 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.263R free:0.295

NDB ID:

4XVI

PDB ID:

4XVI 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain ajar

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.213R free:0.236

NDB ID:

4XVK

PDB ID:

4XVK 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain closed

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.222R free:0.241

NDB ID:

4XVL

PDB ID:

4XVL 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain open

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.301Å R work:0.202R free:0.223

NDB ID:

4XVM

PDB ID:

4XVM 

Release:

2015-03-11

Title:

Binary complex of human polymerase nu and DNA with the finger domain closed and thumb domain rotated out

Classification:

TRANSFERASE/DNA

Authors:

Lee, Y.S., Gao, Y., Yang, W.

Citation:

How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis.
Nat.Struct.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.242R free:0.281

NDB ID:

4YIR

PDB ID:

4YIR 

Release:

2015-03-11

Title:

Crystal structure of Rad4-Rad23 crosslinked to an undamaged DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Chen, X., Velmurugu, Y., Zheng, G., Park, B., Shim, Y., Kim, Y., Liu, L., Van Houten, B., He, C., Ansari, A., Min, J.H.

Citation:

Kinetic gating mechanism of DNA damage recognition by Rad4/XPC.
Nat Commun 6 pp.5849 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.0501Å R work:0.192R free:0.252

NDB ID:

NA2705

PDB ID:

4MNB 

Release:

2015-03-11

Title:

Crystal Structure of a complex between the marine anticancer drug Variolin B and DNA

Classification:

DNA

Authors:

Canals, A., Arribas-Bosacoma, R., Alvarez, M., Albericio, F., Aymami, J., Coll, M.

Citation:

Crystal Structure of a complex between the marine anticancer drug Variolin B and DNA
TO BE PUBLISHED pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.208R free:0.253

NDB ID:

NA3156

PDB ID:

4R5P 

Release:

2015-03-11

Title:

Crystal structure of HIV-1 reverse transcriptase (RT) with DNA and a nucleoside triphosphate mimic alpha-carboxy nucleoside phosphonate inhibitor

Classification:

TRANSFERASE, HYDROLASE/DNA/INHIBITOR

Authors:

Balzarini, J., Das, K., Bernatchez, J.A., Martinez, S.E., Ngure, M., Keane, S., Ford, A., Maguire, N., Mullins, N., John, J., Kim, Y., Dehaen, W., Vande Voorde, J., Liekens, S., Naesens, L., Gotte, M., Maguire, A.R., Arnold, E.

Citation:

Alpha-carboxy nucleoside phosphonates as universal nucleoside triphosphate mimics.
Proc.Natl.Acad.Sci.USA 112 pp.3475 - 3480 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.894Å R work:0.194R free:0.25

NDB ID:

NA3121

PDB ID:

4R22 

Release:

2015-03-04

Title:

TnrA-DNA complex

Classification:

transcription/DNA

Authors:

Schumacher, M.A., Chinnam, N.B., Cuthbert, B., Tonthat, N.K., Whitfill, T.

Citation:

Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis.
Genes Dev. 29 pp.451 - 464 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.26R free:0.278

NDB ID:

NA3122

PDB ID:

4R24 

Release:

2015-03-04

Title:

Complete dissection of B. subtilis nitrogen homeostatic circuitry

Classification:

transcrption/DNA

Authors:

Schumacher, M.A., Chinnam, N.B., Cuthbert, B., Tonthat, N.K., Whitfill, T.

Citation:

Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis.
Genes Dev. 29 pp.451 - 464 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.217R free:0.242

NDB ID:

NA3141

PDB ID:

4R15 

Release:

2015-03-04

Title:

High-resolution crystal structure of Z-DNA in complex with Cr3+ cations

Classification:

DNA

Authors:

Drozdzal, P., Gilski, M., Kierzek, R., Lomozik, L., Jaskolski, M.

Citation:

High-resolution crystal structure of Z-DNA in complex with Cr(3+) cations.
J.Biol.Inorg.Chem. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:0.97Å R work:0.143R free:0.184

NDB ID:

NA3142

PDB ID:

4R4E 

Release:

2015-03-04

Title:

Structure of GlnR-DNA complex

Classification:

Transcription regulator/DNA

Authors:

Schumacher, M.A., Chinnam, N.B., Cuthbert, B., Tonthat, N.K., Whitfill, T.

Citation:

Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis.
Genes Dev. 29 pp.451 - 464 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.57Å R work:0.254R free:0.274

NDB ID:

2MMF

PDB ID:

2MMF 

Release:

2015-02-25

Title:

Solution structure of AGA modified

Classification:

DNA

Authors:

Li, L., Brown, K.L., Ma, R., Stone, M.P.

Citation:

DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol. pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

2MMQ

PDB ID:

2MMQ 

Release:

2015-02-25

Title:

Solution structure of AGT FAPY Modified duplex

Classification:

DNA

Authors:

Li, L., Brown, K.L., Ma, R., Stone, M.P.

Citation:

DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol. pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

2MMR

PDB ID:

2MMR 

Release:

2015-02-25

Title:

AGC FAPY modified duplex Major isomer

Classification:

DNA

Authors:

Li, L., Brown, K.L., Ma, R., Stone, M.P.

Citation:

DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol. pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

2MMS

PDB ID:

2MMS 

Release:

2015-02-25

Title:

AG(7-deaza)G FAPY modified duplex

Classification:

DNA

Authors:

Li, L., Brown, K.L., Ma, R., Stone, M.P.

Citation:

DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct.
Chem.Res.Toxicol. pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

4U5M

PDB ID:

4U5M 

Release:

2015-02-25

Title:

Structure of a left-handed DNA G-quadruplex

Classification:

DNA

Authors:

Chung, W.J., Heddi, B., Schmitt, E., Lim, K.W., Mechulam, Y., Phan, A.T.

Citation:

Structure of a left-handed DNA G-quadruplex.
Proc.Natl.Acad.Sci.USA 112 pp.2729 - 2733 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.141R free:0.18

NDB ID:

2MS9

PDB ID:

2MS9 

Release:

2015-02-18

Title:

Solution structure of a G-quadruplex

Classification:

DNA

Authors:

Chung, W.J., Heddi, B., Schmitt, E., Lim, K.W., Mechulam, Y., Phan, A.T.

Citation:

Structure of a left-handed DNA G-quadruplex
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

4WQS

PDB ID:

4WQS 

Release:

2015-02-18

Title:

Thermus thermophilus RNA polymerase backtracked complex

Classification:

TRANSFERASE/DNA/RNA

Authors:

Sekine, S.I., Murayama, Y., Svetlov, V., Nudler, E., Yokoyama, S.

Citation:

The Ratcheted and Ratchetable Structural States of RNA Polymerase Underlie Multiple Transcriptional Functions.
Mol.Cell 57 pp.408 - 421 2015

Experiment:

X-RAY DIFFRACTION Resolution:4.306Å R work:0.28R free:0.311

NDB ID:

NA3257

PDB ID:

4RNM 

Release:

2015-02-18

Title:

Crystal structure of human polymerase eta inserting dAMPnPP opposite DNA template containing an abasic site

Classification:

TRANSFERASE/DNA

Authors:

Patra, A., Zhang, Q., Lei, L., Su, Y., Egli, M., Guengerich, F.P.

Citation:

Structural and Kinetic Analysis of Nucleoside Triphosphate Incorporation Opposite an Abasic Site by Human Translesion DNA Polymerase Eta
J.Biol.Chem. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.144Å R work:0.166R free:0.218

NDB ID:

NA3258

PDB ID:

4RNN 

Release:

2015-02-18

Title:

Crystal structure of human polymerase eta inserting dGMPnPP opposite DNA template containing an abasic site

Classification:

TRANSFERASE/DNA

Authors:

Patra, A., Zhang, Q., Lei, L., Su, Y., Egli, M., Guengerich, F.P.

Citation:

Structural and Kinetic Analysis of Nucleoside Triphosphate Incorporation Opposite an Abasic Site by Human Translesion DNA Polymerase Eta
J.Biol.Chem. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.808Å R work:0.167R free:0.202

NDB ID:

NA3259

PDB ID:

4RNO 

Release:

2015-02-18

Title:

Crystal structure of human polymerase eta extending an abasic site-dA pair by inserting dCTP opposite template G

Classification:

TRANSFERASE/DNA

Authors:

Patra, A., Zhang, Q., Lei, L., Su, Y., Egli, M., Guengerich, F.P.

Citation:

Structural and Kinetic Analysis of Nucleoside Triphosphate Incorporation Opposite an Abasic Site by Human Translesion DNA Polymerase Eta
J.Biol.Chem. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.82Å R work:0.241R free:0.281

NDB ID:

NA3356

PDB ID:

4CN2 

Release:

2015-02-18

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human Ramp2 Response Element

Classification:

TRANSCRIPTION/DNA

Authors:

Osz, J., Mcewen, A.G., Poussin-Courmontagne, P., Moutier, E., Birck, C., Davidson, I., Moras, D., Rochel, N.

Citation:

Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor.
Sci.Rep. 5 pp.8216 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.069Å R work:0.164R free:0.214

NDB ID:

NA3357

PDB ID:

4CN3 

Release:

2015-02-18

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human Gde1SpA Response Element

Classification:

TRANSCRIPTION/DNA

Authors:

Osz, J., Mcewen, A.G., Poussin-Courmontagne, P., Moutier, E., Birck, C., Davidson, I., Moras, D., Rochel, N.

Citation:

Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor.
Sci.Rep. 5 pp.8216 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.179R free:0.249

NDB ID:

NA3358

PDB ID:

4CN5 

Release:

2015-02-18

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human Nr1d1 Response Element

Classification:

TRANSCRIPTION/DNA

Authors:

Osz, J., Mcewen, A.G., Poussin-Courmontagne, P., Moutier, E., Birck, C., Davidson, I., Moras, D., Rochel, N.

Citation:

Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor.
Sci.Rep. 5 pp.8216 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.167R free:0.226

NDB ID:

NA3359

PDB ID:

4CN7 

Release:

2015-02-18

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to an idealized DR1 Response Element

Classification:

TRANSCRIPTION/DNA

Authors:

Osz, J., Mcewen, A.G., Poussin-Courmontagne, P., Moutier, E., Birck, C., Davidson, I., Moras, D., Rochel, N.

Citation:

Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor.
Sci.Rep. 5 pp.8216 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.34Å R work:0.173R free:0.209

NDB ID:

NA3360

PDB ID:

4CYC 

Release:

2015-02-18

Title:

CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS

Classification:

TRANSCRIPTION

Authors:

Foos, N., Maurel-Zaffran, C., Mate, M.J., Vincentelli, R., Hainaut, M., Berenger, H., Pradel, J., Saurin, A.J., Ortiz-Lombardia, M., Graba, Y.

Citation:

A Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/Pbc Interaction Mode.
Structure 23 pp.270 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.36Å R work:0.212R free:0.226

NDB ID:

NA3361

PDB ID:

4UUS 

Release:

2015-02-18

Title:

CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF

Classification:

TRANSCRIPTION

Authors:

Foos, N., Maurel-Zaffran, C., Mate, M.J., Vincentelli, R., Hainaut, M., Berenger, H., Pradel, J., Saurin, A.J., Ortiz-Lombardia, M., Graba, Y.

Citation:

A Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/Pbc Interaction Mode.
Structure 23 pp.270 - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.187R free:0.239

NDB ID:

4U7B

PDB ID:

4U7B 

Release:

2015-02-11

Title:

Crystal structure of a pre-cleavage Mos1 transpososome

Classification:

Hydrolase/DNA

Authors:

Dornan, J., Grey, H., Richardson, J.M.

Citation:

Structural role of the flanking DNA in mariner transposon excision.
Nucleic Acids Res. 43 pp.2424 - 2432 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.09Å R work:0.228R free:0.261

NDB ID:

NA2877

PDB ID:

3WPC 

Release:

2015-02-11

Title:

Crystal structure of horse TLR9 in complex with agonistic DNA1668_12mer

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ohto, U., Shibata, T., Tanji, H., Ishida, H., Krayukhina, E., Uchiyama, S., Miyake, K., Shimizu, T.

Citation:

Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.183R free:0.22

NDB ID:

NA2878

PDB ID:

3WPD 

Release:

2015-02-11

Title:

Crystal structure of horse TLR9 in complex with inhibitory DNA4084

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ohto, U., Shibata, T., Tanji, H., Ishida, H., Krayukhina, E., Uchiyama, S., Miyake, K., Shimizu, T.

Citation:

Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.2R free:0.258

NDB ID:

NA2879

PDB ID:

3WPE 

Release:

2015-02-11

Title:

Crystal structure of bovine TLR9 in complex with agonistic DNA1668_12mer

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ohto, U., Shibata, T., Tanji, H., Ishida, H., Krayukhina, E., Uchiyama, S., Miyake, K., Shimizu, T.

Citation:

Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.38Å R work:0.217R free:0.273

NDB ID:

NA2880

PDB ID:

3WPG 

Release:

2015-02-11

Title:

Crystal structure of mouse TLR9 in complex with inhibitory DNA4084 (form 1)

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Ohto, U., Shibata, T., Tanji, H., Ishida, H., Krayukhina, E., Uchiyama, S., Miyake, K., Shimizu, T.

Citation:

Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.246Å R work:0.235R free:0.28