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As of 16-Jan-2019 number of released structures: 9970
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Polymer Type: All + Protein Function: All + Structural Features: All + Experimental Method: All

Results: 6758  Download results as an excel file       Gallery view

NDB ID:

6A1O

PDB ID:

6A1O 

Release:

2019-01-16

Title:

Crystal structures of disordered Z-type helices

Classification:

DNA

Authors:

Karthik, S., Mandal, P.K., Thirugnanasambandam, A., Gautham, N.

Citation:

Crystal structures of disordered Z-type helices
Nucleosides Nucleotides Nucleic Acids pp.1 - 15 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.49Å R work:0.279R free:0.299

NDB ID:

6A1Q

PDB ID:

6A1Q 

Release:

2019-01-16

Title:

Crystal structures of disordered Z-type helices

Classification:

DNA

Authors:

Karthik, S., Mandal, P.K., Thirugnanasambandam, A., Gautham, N.

Citation:

Crystal structures of disordered Z-type helices.
Nucleosides Nucleotides Nucleic Acids pp.1 - 15 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.501Å R work:0.274R free:0.276

NDB ID:

6A2H

PDB ID:

6A2H 

Release:

2019-01-16

Title:

Architectural roles of Cren7 in folding crenarchaeal chromatin filament

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhang, Z., Zhao, M., Chen, Y., Wang, L., Liu, Q., Dong, Y., Gong, Y., Huang, L.

Citation:

Architectural roles of Cren7 in folding crenarchaeal chromatin filament.
Mol. Microbiol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.21R free:0.277

NDB ID:

6A2I

PDB ID:

6A2I 

Release:

2019-01-16

Title:

Architectural roles of Cren7 in folding crenarchaeal chromatin filament

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Zhang, Z., Zhao, M., Chen, Y., Wang, L., Liu, Q., Dong, Y., Gong, Y., Huang, L.

Citation:

Architectural roles of Cren7 in folding crenarchaeal chromatin filament.
Mol. Microbiol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.224R free:0.26

NDB ID:

6IDE

PDB ID:

6IDE 

Release:

2019-01-16

Title:

Crystal structure of the Vibrio cholera VqmA-Ligand-DNA complex provides molecular mechanisms for drug design

Classification:

TRANSCRIPTION/DNA

Authors:

Wu, H., Li, M., Guo, H., Zhou, H., Li, B., Xu, Q., Xu, C., Yu, F., He, J.

Citation:

Crystal structure of theVibrio choleraeVqmA-ligand-DNA complex provides insight into ligand-binding mechanisms relevant for drug design
J. Biol. Chem. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.51Å R work:0.191R free:0.229

NDB ID:

6NIZ

PDB ID:

6NIZ 

Release:

2019-01-16

Title:

Atomic structure of a fluorescent Ag8 cluster templated by a multistranded DNA scaffold

Classification:

DNA

Authors:

Huard, D.J.E., Demissie, A., Kim, D., Lewis, D., Dickson, R.M., Petty, J.T., Lieberman, R.L.

Citation:

Atomic structure of a fluorescent Ag8cluster templated by a multi-stranded DNA scaffold.
J. Am. Chem. Soc. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:0.93Å R work:0.081R free:0.091

NDB ID:

6GH0

PDB ID:

6GH0 

Release:

2019-01-09

Title:

Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure

Classification:

DNA

Authors:

Kotar, A., Rigo, R., Sissi, C., Plavec, J.

Citation:

Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure.
Nucleic Acids Res. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6N60

PDB ID:

6N60 

Release:

2019-01-09

Title:

Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin J25 (MccJ25)

Classification:

TRANSFERASE/DNA

Authors:

Braffman, N., Piscotta, F.J., Hauver, J., Campbell, E.A., Link, A.J., Darst, S.A.

Citation:

Structural mechanism of transcription inhibition by Lasso Peptides Microcin J25 and Capistruin
Proc.Natl.Acad.Sci.Usa pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.68Å R work:0.263R free:0.306

NDB ID:

6N61

PDB ID:

6N61 

Release:

2019-01-09

Title:

Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistruin

Classification:

TRANSFERASE/DNA

Authors:

Braffman, N., Piscotta, F.J., Hauver, J., Campbell, E.A., Link, A.J., Darst, S.A.

Citation:

Structural mechanism of transcription inhibition by Lasso Peptides Microcin J25 and Capistruin
Proc.Natl.Acad.Sci.Usa pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.253Å R work:0.272R free:0.316

NDB ID:

6N62

PDB ID:

6N62 

Release:

2019-01-09

Title:

Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA

Classification:

TRANSFERASE/DNA

Authors:

Braffman, N., Piscotta, F.J., Hauver, J., Campbell, E.A., Link, A.J., Darst, S.A.

Citation:

Structural mechanism of transcription inhibition by Lasso Peptides Microcin J25 and Capistruin
Proc.Natl.Acad.Sci.Usa pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.803Å R work:0.285R free:0.333

NDB ID:

5YUU

PDB ID:

5YUU 

Release:

2019-01-02

Title:

DNA polymerase IV - DNA ternary complex 4

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.892Å R work:0.195R free:0.238

NDB ID:

6DKS

PDB ID:

6DKS 

Release:

2019-01-02

Title:

Structure of the Rbpj-SHARP-DNA Repressor Complex

Classification:

TRANSCRIPTION/DNA

Authors:

Kovall, R.A., Yuan, Z., Vanderwielen, B.D.

Citation:

X-ray structure of the RBPJ-SHARP-DNA corepressor complex.
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.78Å R work:0.194R free:0.227

NDB ID:

6E8C

PDB ID:

6E8C 

Release:

2018-12-26

Title:

Crystal structure of the double homeodomain of DUX4 in complex with DNA

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Lee, J.K., Bosnakovski, D., Toso, E.A., Dinh, T., Banerjee, S., Bohl, T.E., Shi, K., Orellana, K., Kyba, M., Aihara, H.

Citation:

Crystal Structure of the Double Homeodomain of DUX4 in Complex with DNA.
Cell Rep 25 pp.2955 - 2962.e3 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.12Å R work:0.198R free:0.246

NDB ID:

6GVQ

PDB ID:

6GVQ 

Release:

2018-12-26

Title:

DNA-bound pRN1 helix bundle domain with ATP and magnesium in the interaction buffer

Classification:

DNA BINDING PROTEIN

Authors:

Boudet, J., Devillier, J.C., Wiegand, T., Salmon, L., Meier, B.H., Lipps, G., Allain, F.H.

Citation:

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.
Cell pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6GVT

PDB ID:

6GVT 

Release:

2018-12-26

Title:

Hybrid structure of the pRN1 helix bundle domain in complex with DNA and 2 ATP molecules

Classification:

DNA BINDING PROTEIN

Authors:

Boudet, J., Devillier, J.C., Wiegand, T., Salmon, L., Meier, B.H., Lipps, G., Allain, F.H.

Citation:

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.
Cell pp. - 2018

Experiment:

SOLID-STATE NMR

NDB ID:

6GVT

PDB ID:

6GVT 

Release:

2018-12-26

Title:

Hybrid structure of the pRN1 helix bundle domain in complex with DNA and 2 ATP molecules

Classification:

DNA BINDING PROTEIN

Authors:

Boudet, J., Devillier, J.C., Wiegand, T., Salmon, L., Meier, B.H., Lipps, G., Allain, F.H.

Citation:

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.
Cell pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6GVU

PDB ID:

6GVU 

Release:

2018-12-26

Title:

NMR structure of the DNA-bound helix bundle domain from the functional pRN1 primase

Classification:

DNA BINDING PROTEIN

Authors:

Boudet, J., Devillier, J.C., Wiegand, T., Salmon, L., Meier, B.H., Lipps, G., Allain, F.H.

Citation:

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.
Cell pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

5YUX

PDB ID:

5YUX 

Release:

2018-12-19

Title:

DNA polymerase IV - DNA ternary complex 8

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.185R free:0.236

NDB ID:

6BHX

PDB ID:

6BHX 

Release:

2018-12-19

Title:

B. subtilis SsbA with DNA

Classification:

DNA binding protein/DNA

Authors:

Dubiel, K., Myers, A.R., Kozlov, A.G., Yang, O., Zhang, J., Ha, T., Lohman, T.M., Keck, J.L.

Citation:

Structural Mechanisms of Cooperative DNA Binding by Bacterial Single-Stranded DNA-Binding Proteins.
J. Mol. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.936Å R work:0.216R free:0.268

NDB ID:

6FWR

PDB ID:

6FWR 

Release:

2018-12-19

Title:

Structure of DinG in complex with ssDNA

Classification:

DNA BINDING PROTEIN

Authors:

Cheng, K., Wigley, D.B.

Citation:

DNA translocation mechanism of an XPD family helicase.
Elife 7 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.21R free:0.245

NDB ID:

6FWS

PDB ID:

6FWS 

Release:

2018-12-19

Title:

Structure of DinG in complex with ssDNA and ADPBeF

Classification:

DNA BINDING PROTEIN

Authors:

Cheng, K., Wigley, D.B.

Citation:

DNA translocation mechanism of an XPD family helicase.
Elife 7 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.219R free:0.255

NDB ID:

6A7Y

PDB ID:

6A7Y 

Release:

2018-12-12

Title:

Solution structure of an intermolecular leaped V-shape G-quadruplex

Classification:

DNA

Authors:

Wan, C., Fu, W., Jing, H., Zhang, N.

Citation:

NMR solution structure of an asymmetric intermolecular leaped V-shape G-quadruplex: selective recognition of the d(G2NG3NG4) sequence motif by a short linear G-rich DNA probe.
Nucleic Acids Res. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6MG2

PDB ID:

6MG2 

Release:

2018-12-12

Title:

C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence-C2221 Crystal Form

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Wang, D., Ren, R., Li, J., Sun, D., Huang, Y., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structural basis for effects of CpA modifications on C/EBP beta binding of DNA.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.928Å R work:0.175R free:0.209

NDB ID:

6MG3

PDB ID:

6MG3 

Release:

2018-12-12

Title:

V285A Mutant of the C-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide Containing Consensus Recognition Sequence

Classification:

TRANSCRIPTION/DNA

Authors:

Yang, J., Horton, J.R., Wang, D., Ren, R., Li, J., Sun, D., Huang, Y., Zhang, X., Blumenthal, R.M., Cheng, X.

Citation:

Structural basis for effects of CpA modifications on C/EBP beta binding of DNA.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.221R free:0.248

NDB ID:

6BQU

PDB ID:

6BQU 

Release:

2018-12-05

Title:

Human GR (418-507) in complex with monomeric DNA binding site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pufall, M.A.

Citation:

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.213R free:0.248

NDB ID:

6BSE

PDB ID:

6BSE 

Release:

2018-12-05

Title:

Glucocorticoid receptor bound to high cooperativity monomer sequence

Classification:

GENE REGULATION

Authors:

Pufall, M.A., Zhang, L.

Citation:

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.192R free:0.229

NDB ID:

6BSF

PDB ID:

6BSF 

Release:

2018-12-05

Title:

Human GR (418-507) in complex with monomeric DNA binding site

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Pufall, M.A.

Citation:

General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.206R free:0.233

NDB ID:

6FBQ

PDB ID:

6FBQ 

Release:

2018-12-05

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human MEp DR1 Response Element, pH 7.0

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Wolf, J., Poussin-Courmontagne, P., Peluso-Iltis, C., Chebaro, Y., Kieffer, B., Rochel, N.

Citation:

Modulation of RXR-DNA complex assembly by DNA context.
Mol. Cell. Endocrinol. 481 pp.44 - 52 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.163R free:0.197

NDB ID:

6FBR

PDB ID:

6FBR 

Release:

2018-12-05

Title:

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human MEp DR1 Response Element, pH 4.2

Classification:

TRANSCRIPTION

Authors:

Osz, J., McEwen, A.G., Wolf, J., Poussin-Courmontagne, P., Peluso-Iltis, C., Chebaro, Y., Kieffer, B., Rochel, N.

Citation:

Modulation of RXR-DNA complex assembly by DNA context.
Mol. Cell. Endocrinol. 481 pp.44 - 52 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.178R free:0.231

NDB ID:

6FQ2

PDB ID:

6FQ2 

Release:

2018-12-05

Title:

Structure of minimal sequence for left -handed G-quadruplex formation

Classification:

DNA

Authors:

Phan, A.T.

Citation:

A minimal sequence for left-handed G-quadruplex formation.
Angew. Chem. Int. Ed. Engl. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.31Å R work:0.195R free:0.226

NDB ID:

6N4G

PDB ID:

6N4G 

Release:

2018-12-05

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.146R free:0.219

NDB ID:

6GZ7

PDB ID:

6GZ7 

Release:

2018-11-28

Title:

Polyamide - DNA complex NMR structure

Classification:

UNKNOWN FUNCTION

Authors:

Burley, G., Padroni, G., Parkinson, J., Welte, T.

Citation:

Structural and Kinetic Profiling of Allosteric Modulation of Duplex DNA Induced by DNA-Binding Polyamide Analogues.
Chemistry pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6IG1

PDB ID:

6IG1 

Release:

2018-11-28

Title:

DNA polymerase IV - DNA ternary complex 10

Classification:

DNA BINDING PROTEIN

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.97Å R work:0.201R free:0.243

NDB ID:

5YTC

PDB ID:

5YTC 

Release:

2018-11-21

Title:

Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the unnatural base M-fC pair with dATP in the active site

Classification:

TRANSFERASE/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.28Å R work:0.194R free:0.257

NDB ID:

5YTD

PDB ID:

5YTD 

Release:

2018-11-21

Title:

large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the natural base pair 5fC:dGTP

Classification:

REPLICATION/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.196R free:0.238

NDB ID:

5YTE

PDB ID:

5YTE 

Release:

2018-11-21

Title:

Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with with natural dT:dATP base pair

Classification:

REPLICATION/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.21Å R work:0.184R free:0.237

NDB ID:

5YTF

PDB ID:

5YTF 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dA

Classification:

TRANSFERASE/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.18R free:0.232

NDB ID:

5YTG

PDB ID:

5YTG 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base I-fC pair with dA

Classification:

TRANSFERASE/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.07Å R work:0.198R free:0.252

NDB ID:

5YTH

PDB ID:

5YTH 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dG

Classification:

TRANSFERASE/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.53Å R work:0.203R free:0.274

NDB ID:

5Z3N

PDB ID:

5Z3N 

Release:

2018-11-21

Title:

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base 5fC pair with dA

Classification:

REPLICATION/DNA

Authors:

Zeng, H., Mondal, M., Song, R., Zhang, J., Xia, B., Liu, M., Zhu, C., He, B., Gao, Y.Q., Yi, C.

Citation:

Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl. 58 pp.130 - 133 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.91Å R work:0.183R free:0.229

NDB ID:

5ZVA

PDB ID:

5ZVA 

Release:

2018-11-21

Title:

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dC9)

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Cheng, C., Zhang, T., Wang, C., Lan, W., Ding, J., Cao, C.

Citation:

Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem. 36 pp.1241 - 1248 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.16R free:0.208

NDB ID:

5ZVB

PDB ID:

5ZVB 

Release:

2018-11-21

Title:

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)

Classification:

STRUCTURAL PROTEIN/DNA

Authors:

Cheng, C., Zhang, T., Wang, C., Lan, W., Ding, J., Cao, C.

Citation:

Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem. 36 pp.1241 - 1248 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.171R free:0.22

NDB ID:

5YBD

PDB ID:

5YBD 

Release:

2018-11-14

Title:

X-ray structure of ETS domain of Ergp55 in complex with E74DNA

Classification:

DNA BINDING PROTEIN

Authors:

Sharma, R., Gangwar, S.P., Saxena, A.K.

Citation:

Comparative structure analysis of the ETSi domain of ERG3 and its complex with the E74 promoter DNA sequence
Acta Crystallogr F Struct Biol Commun 74 pp.656 - 663 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.769Å R work:0.204R free:0.281

NDB ID:

5YUZ

PDB ID:

5YUZ 

Release:

2018-11-14

Title:

DNA polymerase IV - DNA ternary complex 11

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.83Å R work:0.197R free:0.232

NDB ID:

5YV0

PDB ID:

5YV0 

Release:

2018-11-14

Title:

DNA polymerase IV - DNA ternary complex 12

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction.
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.192R free:0.24

NDB ID:

6MC2

PDB ID:

6MC2 

Release:

2018-11-14

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.05Å R work:0.106R free:0.137

NDB ID:

6MC3

PDB ID:

6MC3 

Release:

2018-11-14

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.57Å R work:0.2R free:0.243

NDB ID:

6MC4

PDB ID:

6MC4 

Release:

2018-11-14

Title:

Crystal structure of a tetrameric DNA fold-back quadruplex

Classification:

DNA

Authors:

Chu, B., Zhang, D., Hwang, W., Paukstelis, P.J.

Citation:

Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex.
J. Am. Chem. Soc. 140 pp.16291 - 16298 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.228R free:0.268

NDB ID:

5YUS

PDB ID:

5YUS 

Release:

2018-11-07

Title:

DNA polymerase IV - DNA ternary complex 2

Classification:

DNA BINDING PROTEIN/DNA

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.94Å R work:0.189R free:0.227

NDB ID:

5YUW

PDB ID:

5YUW 

Release:

2018-11-07

Title:

DNA polymerase IV - DNA ternary complex 6

Classification:

DNA BINDING PROTEIN/DAN

Authors:

Kottur, J., Nair, D.T.

Citation:

Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res. 46 pp.5875 - 5885 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.124Å R work:0.188R free:0.231