A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Dec-2018 number of released structures: 9940
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4854  Download results as an excel file       Gallery view

NDB ID:

 5YYN

PDB ID:

5YYN 

Release:

2018-12-12

Title:

Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg)

Classification:

LIGASE/RNA

Authors:

Zhou, M., Ye, S., Stephen, P., Zhang, R.G., Wang, E.D., Giege, R., Lin, S.X.

Citation:

Crystal Structures Of E.Coli Arginyl-Trna Synthetase (Argrs) In Complex With Substrates
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.219R free:0.268

NDB ID:

 6CYT

PDB ID:

6CYT 

Release:

2018-12-12

Title:

HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb

Classification:

TRANSCRIPTION/RNA

Authors:

Schulze-Gahmen, U., Hurley, J.

Citation:

Structural mechanism for HIV-1 TAR loop recognition by Tat and the super elongation complex
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.247R free:0.282

NDB ID:

 6D2U

PDB ID:

6D2U 

Release:

2018-12-12

Title:

Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA

Classification:

Peptide/RNA

Authors:

Shortridge, M.D., Wille, P.T., Jones, A.N., Davidson, A., Bogdanovic, J., Arts, E., Karn, J., Robinson, J.A., Varani, G.

Citation:

An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb.
Nucleic Acids Res. pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6E4P

PDB ID:

6E4P 

Release:

2018-12-12

Title:

Structure of the T. brucei RRM domain in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Travis, B., Shaw, P.L.R., Liu, B., Ravindra, K., Iliff, H., Al-Hashimi, H.M., Schumacher, M.A.

Citation:

The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.949Å R work:0.18R free:0.228

NDB ID:

 6IFN

PDB ID:

6IFN 

Release:

2018-12-12

Title:

Crystal structure of Type III-A CRISPR Csm complex

Classification:

RNA BINDING PROTEIN

Authors:

You, L., Ma, J., Wang, J., Artamonova, D., Wang, M., Liu, L., Severinov, K., Zhang, X., Wang, Y.

Citation:

Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference
Cell(Cambridge,Mass.) pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.201R free:0.244

NDB ID:

 6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site
Nucleic Acids Research pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

NDB ID:

 6N9F

PDB ID:

6N9F 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site
Nucleic Acids Research pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.279

NDB ID:

 5YTS

PDB ID:

5YTS 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCUUCU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CUUC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.77Å R work:0.187R free:0.226

NDB ID:

 5YTT

PDB ID:

5YTT 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAUGU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.182R free:0.217

NDB ID:

 5YTV

PDB ID:

5YTV 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAUCU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CAUC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.196R free:0.227

NDB ID:

 5YTX

PDB ID:

5YTX 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAACU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Huang, Y., Yang, X.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CAAC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.551Å R work:0.2R free:0.24

NDB ID:

 6G7Z

PDB ID:

6G7Z 

Release:

2018-12-05

Title:

Lariat-capping ribozyme with a shortened DP2 stem loop

Classification:

RNA

Authors:

Masquida, B., Meyer, M., Olieric, V.

Citation:

Lariat-capping ribozyme with a shortened DP2 stem loop
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.33595Å R work:0.234R free:0.304

NDB ID:

 6I0T

PDB ID:

6I0T 

Release:

2018-12-05

Title:

Crystal structure of DmTailor in complex with GpU

Classification:

TRANSFERASE

Authors:

Kroupova, A., Ivascu, A., Reimao-Pinto, M.M., Ameres, S.L., Jinek, M.

Citation:

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.204R free:0.233

NDB ID:

 6I0U

PDB ID:

6I0U 

Release:

2018-12-05

Title:

Crystal structure of DmTailor in complex with U6 RNA

Classification:

TRANSFERASE

Authors:

Kroupova, A., Ivascu, A., Reimao-Pinto, M.M., Ameres, S.L., Jinek, M.

Citation:

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.001Å R work:0.205R free:0.24

NDB ID:

 6I0V

PDB ID:

6I0V 

Release:

2018-12-05

Title:

Crystal structure of DmTailor in complex with CACAGU RNA

Classification:

TRANSFERASE

Authors:

Kroupova, A., Ivascu, A., Reimao-Pinto, M.M., Ameres, S.L., Jinek, M.

Citation:

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.851Å R work:0.194R free:0.225

NDB ID:

 6I7V

PDB ID:

6I7V 

Release:

2018-12-05

Title:

Ribosomal protein paralogs bL31 and bL36

Classification:

RIBOSOME

Authors:

Lilleorg, S., Reier, K., Pulk, A., Liiv, A., Tammsalu, T., Peil, L., Cate, J.D., Remme, J.

Citation:

Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase.
Biochimie 156 pp.169 - 180 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.186R free:0.254

NDB ID:

 6IS0

PDB ID:

6IS0 

Release:

2018-12-05

Title:

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH and m7G-capped RNA

Classification:

TRANSFERASE/RNA

Authors:

Akichika, S., Hirano, S., Shichino, Y., Suzuki, T., Nishimasu, H., Ishitani, R., Sugita, A., Hirose, Y., Iwasaki, S., Nureki, O., Suzuki, T.

Citation:

Cap-specific terminalN6-methylation of RNA by an RNA polymerase II-associated methyltransferase.
Science pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.177R free:0.214

NDB ID:

 6CHR

PDB ID:

6CHR 

Release:

2018-11-21

Title:

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Classification:

RNA

Authors:

Chan, R.T., Peters, J.K., Robart, A.R., Wiryaman, T., Rajashankar, K.R., Toor, N.

Citation:

Structural basis for the second step of group II intron splicing.
Nat Commun 9 pp.4676 - 4676 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.217R free:0.252

NDB ID:

 6CIH

PDB ID:

6CIH 

Release:

2018-11-21

Title:

Crystal structure of a group II intron lariat in the post-catalytic state

Classification:

RNA

Authors:

Chan, R.T., Peters, J.K., Robart, A.R., Wiryaman, T., Rajashankar, K.R., Toor, N.

Citation:

Structural basis for the second step of group II intron splicing.
Nat Commun 9 pp.4676 - 4676 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.676Å R work:0.208R free:0.255

NDB ID:

 6HAU

PDB ID:

6HAU 

Release:

2018-11-21

Title:

KSHV PAN RNA Mta-response element fragment complexed with the globular domain of herpesvirus saimiri ORF57

Classification:

RNA BINDING PROTEIN

Authors:

Tunnicliffe, R.B., Levy, C., Ruiz Nivia, H.D., Sandri-Goldin, R.M., Golovanov, A.P.

Citation:

Structural identification of conserved RNA binding sites in herpesvirus ORF57 homologs: implications for PAN RNA recognition.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.86Å R work:0.158R free:0.196

NDB ID:

 6HTU

PDB ID:

6HTU 

Release:

2018-11-21

Title:

Structure of hStau1 dsRBD3-4 in complex with ARF1 RNA

Classification:

RNA BINDING PROTEIN

Authors:

Lazzaretti, D., Bandholz-Cajamarca, L., Emmerich, C., Schaaf, K., Basquin, C., Irion, U., Bono, F.

Citation:

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.
Life Sci Alliance 1 pp.e201800187 - e201800187 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.888Å R work:0.217R free:0.239

NDB ID:

 6HU6

PDB ID:

6HU6 

Release:

2018-11-21

Title:

Structure of ARF1 RNA

Classification:

RNA

Authors:

Lazzaretti, D., Bandholz-Cajamarca, L., Emmerich, C., Schaaf, K., Basquin, C., Irion, U., Bono, F.

Citation:

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.
Life Sci Alliance 1 pp.e201800187 - e201800187 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.904Å R work:0.226R free:0.248

NDB ID:

 6BUW

PDB ID:

6BUW 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Miles, S.J., Fredrick, K., Dunham, C.M.

Citation:

to be published
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.206R free:0.25

NDB ID:

 6BZ6

PDB ID:

6BZ6 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.25

NDB ID:

 6BZ7

PDB ID:

6BZ7 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.68Å R work:0.227R free:0.274

NDB ID:

 6BZ8

PDB ID:

6BZ8 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.74Å R work:0.204R free:0.224

NDB ID:

 6DB8

PDB ID:

6DB8 

Release:

2018-11-14

Title:

Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer

Classification:

RNA/IMMUNE SYSTEM

Authors:

Shelke, S.A., Shao, Y., Laski, A., Koirala, D., Weissman, B.P., Fuller, J.R., Tan, X., Constantin, T.P., Waggoner, A.S., Bruchez, M.P., Armitage, B.A., Piccirilli, J.A.

Citation:

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Nat Commun 9 pp.4542 - 4542 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.86541Å R work:0.219R free:0.233

NDB ID:

 6DB9

PDB ID:

6DB9 

Release:

2018-11-14

Title:

Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer

Classification:

RNA/Immune System

Authors:

Shelke, S.A., Shao, Y., Laski, A., Koirala, D., Weissman, B.P., Fuller, J.R., Tan, X., Constantin, T.P., Waggoner, A.S., Bruchez, M.P., Armitage, B.A., Piccirilli, J.A.

Citation:

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Nat Commun 9 pp.4542 - 4542 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.025Å R work:0.23R free:0.256

NDB ID:

 6DLQ

PDB ID:

6DLQ 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.225R free:0.254

NDB ID:

 6DLR

PDB ID:

6DLR 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.656Å R work:0.197R free:0.221

NDB ID:

 6DLS

PDB ID:

6DLS 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, thallium acetate soaked structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.885Å R work:0.207R free:0.234

NDB ID:

 6DLT

PDB ID:

6DLT 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, native structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.224R free:0.243

NDB ID:

 6DMC

PDB ID:

6DMC 

Release:

2018-11-14

Title:

ppGpp Riboswitch bound to ppGpp, native structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.228R free:0.259

NDB ID:

 6DMD

PDB ID:

6DMD 

Release:

2018-11-14

Title:

ppGpp Riboswitch bound to ppGpp, manganese chloride structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.65Å R work:0.217R free:0.272

NDB ID:

 6DME

PDB ID:

6DME 

Release:

2018-11-14

Title:

ppGpp Riboswitch bound to ppGpp, thallium acetate structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.702Å R work:0.199R free:0.242

NDB ID:

 6DNR

PDB ID:

6DNR 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, ligand-free structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.896Å R work:0.212R free:0.273

NDB ID:

 5Z4A

PDB ID:

5Z4A 

Release:

2018-10-31

Title:

Structure of Tailor in complex with AGU RNA

Classification:

TRANSFERASE/RNA

Authors:

Cheng, L., Li, F., Jiang, Y., Yu, H., Xie, C., Shi, Y., Gong, Q.

Citation:

Structure of Tailor in complex with AGU RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.637Å R work:0.157R free:0.19

Equivalence Class: 

NR_all_35335.1 

Eq. Class Rep:

5Z4A

NDB ID:

 5Z4D

PDB ID:

5Z4D 

Release:

2018-10-31

Title:

Structure of Tailor in complex with AGUU RNA

Classification:

TRANSFERASE/RNA

Authors:

Cheng, L., Li, F., Jiang, Y., Yu, H., Xie, C., Shi, Y., Gong, Q.

Citation:

Structure of Tailor in complex with AGUU RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.803Å R work:0.157R free:0.184

Equivalence Class: 

NR_all_83260.1 

Eq. Class Rep:

5Z4D

NDB ID:

 5Z4J

PDB ID:

5Z4J 

Release:

2018-10-31

Title:

Structure of Tailor in complex with U4 RNA

Classification:

TRANSFERASE/RNA

Authors:

Cheng, L., Li, F., Jiang, Y., Yu, H., Xie, C., Shi, Y., Gong, Q.

Citation:

Structure of Tailor in complex with U4 RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.82Å R work:0.155R free:0.192

Equivalence Class: 

NR_all_96683.3 

Eq. Class Rep:

5Z4J

NDB ID:

 6AI6

PDB ID:

6AI6 

Release:

2018-10-31

Title:

Crystal structure of SpCas9-NG

Classification:

HYDROLASE/RNA/DNA

Authors:

Nishimasu, H., Shi, X., Ishiguro, S., Gao, L., Hirano, S., Okazaki, S., Noda, T., Abudayyeh, O.O., Gootenberg, J.S., Mori, H., Oura, S., Holmes, B., Tanaka, M., Seki, M., Hirano, H., Aburatani, H., Ishitani, R., Ikawa, M., Yachie, N., Zhang, F., Nureki, O.

Citation:

Engineered CRISPR-Cas9 nuclease with expanded targeting space
Science 361 pp.1259 - 1262 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.217R free:0.243

Equivalence Class: 

NR_all_33394.3 

Eq. Class Rep:

5B2T

NDB ID:

 6BHJ

PDB ID:

6BHJ 

Release:

2018-10-31

Title:

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer

Classification:

TRANSFERASE/DNA

Authors:

Tuske, S., Zheng, J., Olson, E.D., Ruiz, F.X., Pascal, B.D., Bauman, J.D., Das, K., DeStefano, J.J., Musier-Forsyth, K., Griffin, P.R., Arnold, E.

Citation:

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.81Å R work:0.203R free:0.244

Equivalence Class: 

NR_all_29537.1 

Eq. Class Rep:

6BHJ

NDB ID:

 6CU1

PDB ID:

6CU1 

Release:

2018-10-31

Title:

X-ray structure of the S. typhimurium YrlA effector-binding module

Classification:

RNA

Authors:

Wang, W., Chen, X., Wolin, S.L., Xiong, Y.

Citation:

Structural Basis for tRNA Mimicry by a Bacterial Y RNA.
Structure pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.221R free:0.237

Equivalence Class: 

NR_all_75310.1 

Eq. Class Rep:

6CU1

NDB ID:

 6G2K

PDB ID:

6G2K 

Release:

2018-10-31

Title:

Structure of HuR RRM3 in complex with RNA (UUUUUU)

Classification:

RNA BINDING PROTEIN

Authors:

Pabis, M., Sattler, M.

Citation:

Structure of HuR RRM3 in complex with RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.01Å R work:0.168R free:0.234

Equivalence Class: 

NR_all_74924.6 

Eq. Class Rep:

3PEY

NDB ID:

 6GD2

PDB ID:

6GD2 

Release:

2018-10-31

Title:

Structure of HuR RRM3 in complex with RNA

Classification:

RNA BINDING PROTEIN

Authors:

Pabis, M., Sattler, M.

Citation:

Structure of HuR RRM3 in complex with RNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.191R free:0.245

Equivalence Class: 

NR_all_45842.1 

Eq. Class Rep:

6GD2

NDB ID:

 6GD3

PDB ID:

6GD3 

Release:

2018-10-31

Title:

Structure of HuR RRM3 in complex with RNA (UAUUUA)

Classification:

RNA BINDING PROTEIN

Authors:

Pabis, M., Sattler, M.

Citation:

Structure of HuR RRM3 in complex with RNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.35Å R work:0.164R free:0.188

Equivalence Class: 

NR_all_57261.1 

Eq. Class Rep:

6GD3

NDB ID:

 6GE1

PDB ID:

6GE1 

Release:

2018-10-31

Title:

Solution structure of the r(UGGUGGU)4 RNA quadruplex

Classification:

RNA

Authors:

Andralojc, W., Malgowska, M., Sarzynska, J., Pasternak, K., Szpotkowski, K., Kierzek, R., Gdaniec, Z.

Citation:

Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus.
RNA pp. - 2018

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_41309.1 

Eq. Class Rep:

6GE1

NDB ID:

 6HCT

PDB ID:

6HCT 

Release:

2018-10-31

Title:

Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn

Classification:

RNA

Authors:

Huang, L., Ashraf, S., Lilley, D.M.J.

Citation:

The role of RNA structure in translational regulation by L7Ae protein in archaea.
RNA pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.091Å R work:0.186R free:0.236

Equivalence Class: 

NR_all_02956.1 

Eq. Class Rep:

6HCT

NDB ID:

 6HCT

PDB ID:

6HCT 

Release:

2018-10-31

Title:

Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn

Classification:

RNA

Authors:

Huang, L., Ashraf, S., Lilley, D.M.J.

Citation:

The role of RNA structure in translational regulation by L7Ae protein in archaea.
RNA pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.091Å R work:0.186R free:0.236

Equivalence Class: 

NR_all_07301.1 

Eq. Class Rep:

6HCT

NDB ID:

 6MCE

PDB ID:

6MCE 

Release:

2018-10-31

Title:

Solution structure of HIV-1 TAR with Tat RNA Binding Domain

Classification:

TRANSCRIPTION

Authors:

Pham, V.V., Salguero, C., Khan, S.N., Meagher, J.L., Brown, W.C., Humbert, N., de Rocquigny, H., Smith, J.L., D'Souza, V.M.

Citation:

HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun 9 pp.4266 - 4266 2018

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_42216.1 

Eq. Class Rep:

6MCE

NDB ID:

 6MCF

PDB ID:

6MCF 

Release:

2018-10-31

Title:

Solution structure of 7SK stem-loop 1 with HIV-1 Tat RNA Binding Domain

Classification:

TRANSCRIPTION

Authors:

Pham, V.V., Salguero, C., Khan, S.N., Meagher, J.L., Brown, W.C., Humbert, N., de Rocquigny, H., Smith, J.L., D'Souza, V.M.

Citation:

HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun 9 pp.4266 - 4266 2018

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_88023.1 

Eq. Class Rep:

6MCI

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