A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Jul-2019 number of released structures: 10288
Search for released structures

RNA Search Options:

Polymer

All
RNA Only
Protein RNA Complexes
Drug RNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

RNA Type

All
tRNA
tRNA fragment
Ribosome
Ribozyme
Hairpin Ribozyme
Hammerhead Ribozyme
Group I intron Ribozyme
Group II intron Ribozyme
Rnase P Ribozyme
Polymerase Ribozyme
Ligase Ribozyme
Leadzyme
Ribozyme fragment
Virus
Viral fragment
Riboswitch
Riboswitch fragment
Aptamer
Telomerase RNA
Small nucleotide fragments
Double Helices
Triple Helices
Quadruple Helices

Protein Function

All
Enzymes
Structural
Regulatory

Experimental Method

All
XRAY
NMR

Representative RNA 3D Structure Sets

All RNA Structures
Representative sets of RNA-containing 3D structures
Resolution cutoff:

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5050  Download results as an excel file       Gallery view

NDB ID:

6GZK

PDB ID:

6GZK 

Release:

2019-07-17

Title:

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Classification:

RNA

Authors:

Duchardt-Ferner, E., Kreutz, C.R., Ohlenschlager, O., Wohnert, J.

Citation:

Structure of an RNA aptamer binding to the fluorophore tetramethylrhodamine
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6GZR

PDB ID:

6GZR 

Release:

2019-07-17

Title:

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Classification:

RNA

Authors:

Duchardt-Ferner, E., Kreutz, C.R., Ohlenschlager, O., Wohnert, J.

Citation:

Structure of an RNA aptamer binding to the fluorophore tetramethylrhodamine
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6OD9

PDB ID:

6OD9 

Release:

2019-07-17

Title:

Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser

Classification:

RNA

Authors:

Jones, C.P., Tran, B., Conrad, C., Stango, J., Trachman, R.J., Fischer, P., Meents, A., Ferre-D'Amare, A.R.

Citation:

Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
Acta Crystallogr.,Sect.F pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:4.102Å R work:0.258R free:0.307

NDB ID:

6NY5

PDB ID:

6NY5 

Release:

2019-07-03

Title:

Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Qiu, C., Dutcher, R.C., Porter, D.F., Arava, Y., Wickens, M., Hall, T.M.T.

Citation:

Cooperative activity of distinct RNA-binding modules define recognition specificity of a fungal Puf1 protein
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.002Å R work:0.21R free:0.263

Equivalence Class: 

NR_all_12115.1 

Eq. Class Rep:

6NY5

NDB ID:

6OL3

PDB ID:

6OL3 

Release:

2019-07-03

Title:

Crystal structure of an adenovirus virus-associated RNA

Classification:

RNA

Authors:

Hood, I.V., Gordon, J.M., Bou-Nader, C., Henderson, F.E., Bahmanjah, S., Zhang, J.

Citation:

Crystal structure of an adenovirus virus-associated RNA.
Nat Commun 10 pp.2871 - 2871 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.74Å R work:0.217R free:0.235

Equivalence Class: 

NR_all_80225.1 

Eq. Class Rep:

6OL3

NDB ID:

6Q8U

PDB ID:

6Q8U 

Release:

2019-07-03

Title:

Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein

Classification:

RNA

Authors:

Ashraf, S., Huang, L., Lilley, D.M.J.

Citation:

Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol. pp.1 - 9 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.99Å R work:0.188R free:0.227

Equivalence Class: 

NR_all_67355.2 

Eq. Class Rep:

4CS1

NDB ID:

6Q8V

PDB ID:

6Q8V 

Release:

2019-07-03

Title:

Structure of the standard kink turn HmKt-7 variant A2bm6A.

Classification:

RNA

Authors:

Ashraf, S., Huang, L., Lilley, D.M.J.

Citation:

Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol. pp.1 - 9 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.205R free:0.21

Equivalence Class: 

NR_all_63269.1 

Eq. Class Rep:

6Q8V

NDB ID:

6R47

PDB ID:

6R47 

Release:

2019-07-03

Title:

The structure of pistol ribozyme bound to magnesium

Classification:

RNA

Authors:

Wilson, T.J., Liu, Y., Li, N.S., Dai, Q., Piccirilli, J.A., Lilley, D.M.J.

Citation:

Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
J.Am.Chem.Soc. 141 pp.7865 - 7875 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.175R free:0.18

Equivalence Class: 

NR_all_80776.1 

Eq. Class Rep:

6R47

NDB ID:

6DVK

PDB ID:

6DVK 

Release:

2019-06-26

Title:

Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program - construct 6 (miniTTR 6)

Classification:

RNA

Authors:

Yesselman, J.D., Eiler, D.R., Carlson, E.D., Ooms, A.N., Kladwang, W., Shi, X., Costantino, D.A., Herschlag, D., Jewett, M.C., Kieft, J.S., Das, R.

Citation:

Computational design of asymmetric three-dimensional RNA structures and machines
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_89968.1 

Eq. Class Rep:

6DVK

NDB ID:

6A6J

PDB ID:

6A6J 

Release:

2019-06-19

Title:

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhang, M., Wu, B., Ma, J., Huang, Y.

Citation:

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.255Å R work:0.224R free:0.272

Equivalence Class: 

NR_all_65220.1 

Eq. Class Rep:

6A6J

NDB ID:

6A6L

PDB ID:

6A6L 

Release:

2019-06-19

Title:

Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Huang, Y.

Citation:

Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.78Å R work:0.179R free:0.206

Equivalence Class: 

NR_all_65220.1 

Eq. Class Rep:

6A6J

NDB ID:

6IV8

PDB ID:

6IV8 

Release:

2019-06-19

Title:

the selenomethionine(SeMet)-derived Cas13d binary complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhang, B., Ye, Y., Ye, W., Perculija, V., Jiang, H., Chen, Y., Li, Y., Chen, J., Lin, J., Wang, S., Chen, Q., Han, Y.S., Ouyang, S.

Citation:

Two HEPN domains dictate CRISPR RNA maturation and target cleavage in Cas13d.
Nat Commun 10 pp.2544 - 2544 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.188R free:0.21

Equivalence Class: 

NR_all_65403.1 

Eq. Class Rep:

6IV9

NDB ID:

6IV9

PDB ID:

6IV9 

Release:

2019-06-19

Title:

the Cas13d binary complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhang, B., Ye, Y., Ye, W., Perculija, V., Jiang, H., Chen, Y., Li, Y., Chen, J., Lin, J., Wang, S., Chen, Q., Han, Y.S., Ouyang, S.

Citation:

Two HEPN domains dictate CRISPR RNA maturation and target cleavage in Cas13d.
Nat Commun 10 pp.2544 - 2544 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.86Å R work:0.169R free:0.195

Equivalence Class: 

NR_all_65403.1 

Eq. Class Rep:

6IV9

NDB ID:

6OY6

PDB ID:

6OY6 

Release:

2019-06-19

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.096Å R work:0.211R free:0.264

Equivalence Class: 

NR_all_99511.1 

Eq. Class Rep:

6OY6

NDB ID:

6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_65795.49 

Eq. Class Rep:

4LFB

NDB ID:

6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_97519.44 

Eq. Class Rep:

4Y4O

NDB ID:

6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_42622.44 

Eq. Class Rep:

5FDV

NDB ID:

6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_35542.62 

Eq. Class Rep:

5L4O

NDB ID:

6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_65795.49 

Eq. Class Rep:

4LFB

NDB ID:

6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_97519.44 

Eq. Class Rep:

4Y4O

NDB ID:

6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_19951.30 

Eq. Class Rep:

4YCO

NDB ID:

6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_42622.44 

Eq. Class Rep:

5FDV

NDB ID:

6JQ5

PDB ID:

6JQ5 

Release:

2019-06-12

Title:

The structure of Hatchet Ribozyme

Classification:

RNA

Authors:

Zheng, L., Falschlunger, C., Huang, K., Mairhofer, E., Yuan, S., Wang, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA 116 pp.10783 - 10791 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.059Å R work:0.192R free:0.23

Equivalence Class: 

NR_all_18859.1 

Eq. Class Rep:

6JQ5

NDB ID:

6JQ6

PDB ID:

6JQ6 

Release:

2019-06-12

Title:

Hatchet Ribozyme Structure soaking with Ir(NH3)6+

Classification:

RNA

Authors:

Zheng, L., Falschlunger, C., Huang, K., Mairhofer, E., Yuan, S., Wang, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA 116 pp.10783 - 10791 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.626Å R work:0.196R free:0.229

Equivalence Class: 

NR_all_85745.1 

Eq. Class Rep:

6JQ6

NDB ID:

6K3K

PDB ID:

6K3K 

Release:

2019-06-12

Title:

Solution structure of APOBEC3G-CD2 with ssDNA, Product B

Classification:

HYDROLASE/DNA

Authors:

Yan, X., Lan, W., Wang, C., Cao, C.

Citation:

Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA.
Chem Asian J 14 pp.2235 - 2241 2019

Experiment:

SOLUTION NMR

NDB ID:

6N6A

PDB ID:

6N6A 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pGG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pGG
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.146R free:0.16

Equivalence Class: 

NR_all_89612.5 

Eq. Class Rep:

6N6I

NDB ID:

6N6C

PDB ID:

6N6C 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pAA

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pAA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.619Å R work:0.146R free:0.154

Equivalence Class: 

NR_all_80570.7 

Eq. Class Rep:

6N6C

NDB ID:

6N6D

PDB ID:

6N6D 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pAG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pAG
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.534Å R work:0.145R free:0.157

Equivalence Class: 

NR_all_94833.1 

Eq. Class Rep:

6N6D

NDB ID:

6N6E

PDB ID:

6N6E 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pGA

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pGA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.578Å R work:0.151R free:0.158

Equivalence Class: 

NR_all_04288.2 

Eq. Class Rep:

6N6E

NDB ID:

6N6F

PDB ID:

6N6F 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pGC

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pGC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.735Å R work:0.154R free:0.169

Equivalence Class: 

NR_all_50478.3 

Eq. Class Rep:

6N6F

NDB ID:

6N6G

PDB ID:

6N6G 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pCG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pCG
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.018Å R work:0.161R free:0.186

Equivalence Class: 

NR_all_08576.3 

Eq. Class Rep:

6DO8

NDB ID:

6N6H

PDB ID:

6N6H 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pCpU

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pCpU
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.757Å R work:0.16R free:0.183

Equivalence Class: 

NR_all_96254.1 

Eq. Class Rep:

6N6H

NDB ID:

6N6I

PDB ID:

6N6I 

Release:

2019-06-12

Title:

Human REXO2 bound to pGG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Human REXO2 bound to pGG
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.431Å R work:0.158R free:0.178

Equivalence Class: 

NR_all_89612.5 

Eq. Class Rep:

6N6I

NDB ID:

6N6J

PDB ID:

6N6J 

Release:

2019-06-12

Title:

Human REXO2 bound to pAA

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

TBD
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.317Å R work:0.152R free:0.17

Equivalence Class: 

NR_all_80570.7 

Eq. Class Rep:

6N6C

NDB ID:

6N6K

PDB ID:

6N6K 

Release:

2019-06-12

Title:

Human REXO2 bound to pAG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Human REXO2 bound to pAG
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.418Å R work:0.153R free:0.172

Equivalence Class: 

NR_all_94833.1 

Eq. Class Rep:

6N6D

NDB ID:

6QN3

PDB ID:

6QN3 

Release:

2019-06-12

Title:

Structure of the Glutamine II Riboswitch

Classification:

RNA

Authors:

Huang, L., Wang, J., Watkins, A.M., Das, R., Lilley, D.M.J.

Citation:

Structure and ligand binding of the glutamine-II riboswitch.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.242R free:0.294

Equivalence Class: 

NR_all_12561.1 

Eq. Class Rep:

6QN3

NDB ID:

6AAS

PDB ID:

6AAS 

Release:

2019-06-05

Title:

Solution Structure for helix 45 in 3' end of 12S rRNA

Classification:

RNA

Authors:

Liu, X.

Citation:

Solution Structure for helix 45 in 3' end of 12S rRNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_73700.1 

Eq. Class Rep:

6AAS

NDB ID:

6AAU

PDB ID:

6AAU 

Release:

2019-06-05

Title:

Solution Structure for m62A helix 45 in 3' end of 12S rRNA

Classification:

RNA

Authors:

Liu, X.

Citation:

Solution Structure for m62A helix 45 in 3' end of 12S rRNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_73700.1 

Eq. Class Rep:

6AAS

NDB ID:

6AAX

PDB ID:

6AAX 

Release:

2019-06-05

Title:

Crystal structure of TFB1M and h45 with SAM in homo sapiens

Classification:

TRANSFERASE/RNA

Authors:

Liu, X., Shen, S., Wu, P., Li, F., Wu, J., Zhang, H., Shi, Y.

Citation:

Crystal structure of TFB1M and h45 with SAM in homo sapiens
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.994Å R work:0.222R free:0.27

Equivalence Class: 

NR_all_18914.1 

Eq. Class Rep:

6AAX

NDB ID:

6AJK

PDB ID:

6AJK 

Release:

2019-06-05

Title:

Crystal structure of TFB1M and h45 in homo sapiens

Classification:

TRANSFERASE/RNA

Authors:

Liu, X., Shen, S., Wu, P., Li, F., Wang, C., Gong, Q., Wu, J., Zhang, H., Shi, Y.

Citation:

Crystal structure of TFB1M and h45 in homo sapiens
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.001Å R work:0.196R free:0.241

Equivalence Class: 

NR_all_44743.1 

Eq. Class Rep:

6AJK

NDB ID:

6OY5

PDB ID:

6OY5 

Release:

2019-06-05

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.207R free:0.259

Equivalence Class: 

NR_all_89612.5 

Eq. Class Rep:

6N6I

NDB ID:

6QCV

PDB ID:

6QCV 

Release:

2019-06-05

Title:

Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP

Classification:

VIRAL PROTEIN

Authors:

Kouba, T., Drncova, P., Cusack, S.

Citation:

Structural snapshots of actively transcribing influenza polymerase.
Nat.Struct.Mol.Biol. 26 pp.460 - 470 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.24Å R work:0.208R free:0.234

Equivalence Class: 

NR_all_45043.1 

Eq. Class Rep:

4WRT

NDB ID:

6QCW

PDB ID:

6QCW 

Release:

2019-06-05

Title:

Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer

Classification:

VIRAL PROTEIN

Authors:

Kouba, T., Drncova, P., Cusack, S.

Citation:

Structural snapshots of actively transcribing influenza polymerase.
Nat.Struct.Mol.Biol. 26 pp.460 - 470 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.88Å R work:0.214R free:0.233

Equivalence Class: 

NR_all_45043.1 

Eq. Class Rep:

4WRT

NDB ID:

6QCX

PDB ID:

6QCX 

Release:

2019-06-05

Title:

Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer

Classification:

VIRAL PROTEIN

Authors:

Kouba, T., Drncova, P., Cusack, S.

Citation:

Structural snapshots of actively transcribing influenza polymerase.
Nat.Struct.Mol.Biol. 26 pp.460 - 470 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.08Å R work:0.202R free:0.225

Equivalence Class: 

NR_all_45043.1 

Eq. Class Rep:

4WRT

NDB ID:

6JCX

PDB ID:

6JCX 

Release:

2019-05-29

Title:

Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt RNA

Classification:

TRANSCRIPTION

Authors:

Fang, C., Li, L., Shen, L., Shi, J., Wang, S., Feng, Y., Zhang, Y.

Citation:

Structures and mechanism of transcription initiation by bacterial ECF factors.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.903Å R work:0.21R free:0.256

Equivalence Class: 

NR_all_36524.1 

Eq. Class Rep:

6JCY

NDB ID:

6JCY

PDB ID:

6JCY 

Release:

2019-05-29

Title:

Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E

Classification:

TRANSCRIPTION

Authors:

Fang, C., Li, L., Shen, L., Shi, J., Wang, S., Feng, Y., Zhang, Y.

Citation:

Structures and mechanism of transcription initiation by bacterial ECF factors.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.106Å R work:0.194R free:0.238

Equivalence Class: 

NR_all_36524.1 

Eq. Class Rep:

6JCY

NDB ID:

6R9J

PDB ID:

6R9J 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with A7 RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.326Å R work:0.247R free:0.298

Equivalence Class: 

NR_all_98950.1 

Eq. Class Rep:

6R9J

NDB ID:

6R9M

PDB ID:

6R9M 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGAA RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.329Å R work:0.236R free:0.295

Equivalence Class: 

NR_all_67948.1 

Eq. Class Rep:

6R9M

NDB ID:

6R9O

PDB ID:

6R9O 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGA RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.319Å R work:0.254R free:0.309

Equivalence Class: 

NR_all_28508.1 

Eq. Class Rep:

6R9O

NDB ID:

6R9P

PDB ID:

6R9P 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAUUAA RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.261R free:0.308

Equivalence Class: 

NR_all_19332.1 

Eq. Class Rep:

6R9P