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As of 8-Jul-2020 number of released structures: 10846
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5333  Download results as an excel file       Gallery view

NDB ID:

 6PK9

PDB ID:

6PK9 

Release:

2020-07-01

Title:

Solution Structure of lncRNA (LINK-A) 20-nt Hexaloop Hairpin

Classification:

REPLICATION

Authors:

Amado, A.Y., Walker, M., Varani, G.

Citation:

Structure of the lncRNA LINK-A Hexaloop Hairpin in PI(3,4,5)P3 Interaction
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_91640.1 

Eq. Class Rep:

6PK9

NDB ID:

 6VFF

PDB ID:

6VFF 

Release:

2020-07-01

Title:

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Classification:

HYDROLASE/RNA

Authors:

Thuy-boun, A.S., Thomas, J.M., Grajo, H.L., Palumbo, C.M., Park, S., Nguyen, L.T., Fisher, A.J., Beal, P.A.

Citation:

Asymmetric dimerization of adenosine deaminase acting on RNA facilitates substrate recognition
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.196R free:0.248

Equivalence Class: 

NR_all_33521.1 

Eq. Class Rep:

6VFF

NDB ID:

 6X5N

PDB ID:

6X5N 

Release:

2020-07-01

Title:

Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail

Classification:

Immune System/RNA

Authors:

Swain, M., Li, M., Ageeli, A., Kasprzak, W., Miller, J.T., Sztuba-Solinska, J., Kenderdine, T., Fraboni, A., Schneekloth, J., Piccirrili, J., Murelli, R.P., Fabris, D., Wlodawer, A., Shapiro, B., Baird, N., Le Grice, S.F.J.

Citation:

Targeting the Nuclear Expression Element (ENE) Triple Helix of Kaposi Sarcoma Herpesvirus Polyadenylated Nuclear RNA, PAN.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.3Å R work:0.18R free:0.266

Equivalence Class: 

NR_all_35127.1 

Eq. Class Rep:

6X5M

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_35542.68 

Eq. Class Rep:

5L4O

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_35542.68 

Eq. Class Rep:

5L4O

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_35542.68 

Eq. Class Rep:

5L4O

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_35542.68 

Eq. Class Rep:

5L4O

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6VUH

PDB ID:

6VUH 

Release:

2020-06-24

Title:

APO PreQ1 riboswitch aptamer grown in Mn2+

Classification:

RNA

Authors:

Schroeder, G., Dutta, D., Cavender, C., Jenkins, J.L., Pritchett, E., Baker, C., Ashton, J., Mathews, D., Wedekind, J.E.

Citation:

Analysis of a PreQ1-I Riboswitch in Effector-Free and Bound States Reveals a Metabolite-Programmed Nucleobase-Stacking Spine that Controls Gene Regulation
Nucleic Acids Res. pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.999Å R work:0.189R free:0.225

Equivalence Class: 

NR_all_80276.2 

Eq. Class Rep:

6E1S

NDB ID:

 6VUI

PDB ID:

6VUI 

Release:

2020-06-24

Title:

Metabolite-bound PreQ1 riboswitch with Mn2+

Classification:

RNA

Authors:

Schroeder, G., Dutta, D., Cavender, C., Jenkins, J.L., Pritchett, E., Baker, C., Ashton, J., Mathews, D., Wedekind, J.E.

Citation:

Analysis of a PreQ1-I Riboswitch in Effector-Free and Bound States Reveals a Metabolite-Programmed Nucleobase-Stacking Spine that Controls Gene Regulation
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.681Å R work:0.175R free:0.201

Equivalence Class: 

NR_all_80276.2 

Eq. Class Rep:

6E1S

NDB ID:

 6X5M

PDB ID:

6X5M 

Release:

2020-06-24

Title:

Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail

Classification:

Immune System/RNA

Authors:

Swain, M., Li, M., Ageeli, A., Kasprzak, W., Miller, J.T., Sztuba-Solinska, J., Kenderdine, T., Fraboni, A., Schneekloth, J., Piccirrili, J., Murelli, R.P., Fabris, D., Wlodawer, A., Shapiro, B., Baird, N., Le Grice, S.F.J.

Citation:

Targeting the Nuclear Expression Element (ENE) Triple Helix of Kaposi Sarcoma Herpesvirus Polyadenylated Nuclear RNA, PAN.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.207R free:0.278

Equivalence Class: 

NR_all_35127.1 

Eq. Class Rep:

6X5M

NDB ID:

 6L5N

PDB ID:

6L5N 

Release:

2020-06-17

Title:

Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, Z., Li, Z., Hu, X., Xie, F., Kuang, S., Zhan, B., Gao, W., Chen, X., Gao, S., Li, Y., Wang, Y., Qian, F., Ding, C., Gan, J., Ji, C., Xu, X., Zhou, Z., Huang, J., He, H.H., Li, J.

Citation:

Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation.
Adv Sci pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.242Å R work:0.175R free:0.232

Equivalence Class: 

NR_all_51514.1 

Eq. Class Rep:

6L5N

NDB ID:

 6L5N

PDB ID:

6L5N 

Release:

2020-06-17

Title:

Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, Z., Li, Z., Hu, X., Xie, F., Kuang, S., Zhan, B., Gao, W., Chen, X., Gao, S., Li, Y., Wang, Y., Qian, F., Ding, C., Gan, J., Ji, C., Xu, X., Zhou, Z., Huang, J., He, H.H., Li, J.

Citation:

Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation.
Adv Sci pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.242Å R work:0.175R free:0.232

Equivalence Class: 

NR_all_92635.2 

Eq. Class Rep:

6L5N

NDB ID:

 6PPN

PDB ID:

6PPN 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.91Å

Equivalence Class: 

NR_all_74924.11 

Eq. Class Rep:

3PEY

NDB ID:

 6PPP

PDB ID:

6PPP 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm2-8 with processed U6 snRNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.33Å

Equivalence Class: 

NR_all_24721.1 

Eq. Class Rep:

6PPP

NDB ID:

 6PPQ

PDB ID:

6PPQ 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' adenosine

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.81Å

Equivalence Class: 

NR_all_18600.1 

Eq. Class Rep:

6PPQ

NDB ID:

 6PPV

PDB ID:

6PPV 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' guanosine

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.208R free:0.244

Equivalence Class: 

NR_all_81682.1 

Eq. Class Rep:

6PPV

NDB ID:

 6USO

PDB ID:

6USO 

Release:

2020-06-17

Title:

Telomerase Reverse Transcriptase prenucleotide binary complex, TERT:DNA

Classification:

NUCLEAR PROTEIN, TRANSFERASE/RNA/DNA

Authors:

Schaich, M.A., Sanford, S.L., Welfer, G., Khoang, T.H., Johnson, S.A., Opresko, P.L., Freudenthal, B.D.

Citation:

Telomerase Reverse Transcriptase binary complex, TERT:DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.54Å R work:0.24R free:0.264

NDB ID:

 6USP

PDB ID:

6USP 

Release:

2020-06-17

Title:

Telomerase Reverse Transcriptase product complex, TERT:DNA

Classification:

NUCLEAR PROTEIN, TRANSFERASE/RNA/DNA

Authors:

Schaich, M.A., Sanford, S.L., Welfer, G., Khoang, T.H., Johnson, S.A., Opresko, P.L., Freudenthal, B.D.

Citation:

Telomerase Reverse Transcriptase product complex, TERT:DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.56Å R work:0.26R free:0.303

NDB ID:

 6USQ

PDB ID:

6USQ 

Release:

2020-06-17

Title:

Telomerase Reverse Transcriptase binary complex with Y256A mutation, TERT:DNA

Classification:

NUCLEAR PROTEIN, TRANSFERASE/RNA/DNA

Authors:

Schaich, M.A., Sanford, S.L., Welfer, G., Khoang, T.H., Johnson, S.A., Opresko, P.L., Freudenthal, B.D.

Citation:

Telomerase Reverse Transcriptase binary complex with Y256A mutation, TERT:DNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.62Å R work:0.281R free:0.296

NDB ID:

 6USR

PDB ID:

6USR 

Release:

2020-06-17

Title:

Telomerase Reverse Transcriptase ternary complex, TERT:DNA:dGpCpp

Classification:

NUCLEAR PROTEIN, TRANSFERASE/RNA/DNA

Authors:

Schaich, M.A., Sanford, S.L., Welfer, G., Khoang, T.H., Johnson, S.A., Opresko, P.L., Freudenthal, B.D.

Citation:

Telomerase Reverse Transcriptase ternary complex, TERT:DNA:dGpCpp
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.93Å R work:0.264R free:0.289

NDB ID:

 6VM6

PDB ID:

6VM6 

Release:

2020-06-17

Title:

Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 2'3'3'-cAAA

Classification:

HYDROLASE

Authors:

Lowey, B., Whiteley, A.T., Keszei, A.F.A., Morehouse, B.R., Mathews, I.T., Antine, S.P., Cabrera, V.J., Kashin, D., Niemann, P., Jain, M., Schwede, F., Mekalanos, J.J., Shao, S., Lee, A.S.Y., Kranzusch, P.J.

Citation:

CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
Cell pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.185R free:0.219

Equivalence Class: 

NR_all_65223.1 

Eq. Class Rep:

6Q1H

NDB ID:

 6WAN

PDB ID:

6WAN 

Release:

2020-06-17

Title:

Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor with the cyclic trinucleotide 3'3'3'-cAAA

Classification:

HYDROLASE

Authors:

Lowey, B., Whiteley, A.T., Keszei, A.F.A., Morehouse, B.R., Mathews, I.T., Antine, S.P., Cabrera, V.J., Kashin, D., Niemann, P., Jain, M., Schwede, F., Mekalanos, J.J., Shao, S., Lee, A.S.Y., Kranzusch, P.J.

Citation:

CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
Cell pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.207R free:0.239

Equivalence Class: 

NR_all_65223.1 

Eq. Class Rep:

6Q1H

NDB ID:

 6RTI

PDB ID:

6RTI 

Release:

2020-06-10

Title:

X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with aptamer A9g

Classification:

HYDROLASE

Authors:

Motlova, L., Kolenko, P., Barinka, C.

Citation:

X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with aptamer A9g
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.192R free:0.216

Equivalence Class: 

NR_all_89953.1 

Eq. Class Rep:

6RTI

NDB ID:

 6UPX

PDB ID:

6UPX 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1

Classification:

TRANSCRIPTION/RNA/DNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.219R free:0.266

Equivalence Class: 

NR_all_33912.1 

Eq. Class Rep:

3S17

NDB ID:

 6UPY

PDB ID:

6UPY 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E

Classification:

TRANSCRIPTION/RNA/DNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.227R free:0.282

Equivalence Class: 

NR_all_33912.1 

Eq. Class Rep:

3S17

NDB ID:

 6UPZ

PDB ID:

6UPZ 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3

Classification:

TRANSCRIPTION/RNA/DNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.224R free:0.269

Equivalence Class: 

NR_all_34359.4 

Eq. Class Rep:

2NVQ

NDB ID:

 6UQ0

PDB ID:

6UQ0 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4

Classification:

TRANSCRIPTION/RNA/DNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.56Å R work:0.235R free:0.278

Equivalence Class: 

NR_all_34359.4 

Eq. Class Rep:

2NVQ

NDB ID:

 6UQ1

PDB ID:

6UQ1 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.6Å R work:0.239R free:0.287

Equivalence Class: 

NR_all_65602.1 

Eq. Class Rep:

6UQ1

NDB ID:

 6UQ2

PDB ID:

6UQ2 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with dG in state 1

Classification:

TRANSCRIPTION/RNA/DNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.229R free:0.28

Equivalence Class: 

NR_all_33912.1 

Eq. Class Rep:

3S17

NDB ID:

 6UQ3

PDB ID:

6UQ3 

Release:

2020-06-10

Title:

RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5

Classification:

TRANSCRIPTION/RNA/DNA

Authors:

Oh, J., Fleming, A.M., Xu, J., Chong, J., Burrows, C.J., Wang, D.

Citation:

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions.
Proc.Natl.Acad.Sci.USA 117 pp.9338 - 9348 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.47Å R work:0.233R free:0.285

Equivalence Class: 

NR_all_05337.1 

Eq. Class Rep:

6UQ3

NDB ID:

 6VMY

PDB ID:

6VMY 

Release:

2020-06-10

Title:

Structure of the B. subtilis cobalamin riboswitch

Classification:

RNA

Authors:

Chan, C.W., Mondragon, A.

Citation:

Crystal structure of an atypical cobalamin riboswitch reveals RNA structural adaptability as basis for promiscuous ligand binding.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.25Å R work:0.263R free:0.279

Equivalence Class: 

NR_all_27764.1 

Eq. Class Rep:

6VMY

NDB ID:

 6WOX

PDB ID:

6WOX 

Release:

2020-06-10

Title:

Thermus thermophilus RNA polymerase initially transcribing complex with 2'dCTP

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

The mechanism of discrimination against 2dNTPs by the multisubunit RNA polymerases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.14Å R work:0.195R free:0.261

Equivalence Class: 

NR_all_93869.1 

Eq. Class Rep:

6WOY

NDB ID:

 6WOY

PDB ID:

6WOY 

Release:

2020-06-10

Title:

Thermus thermophilus RNA polymerase initially transcribing complex with 3'dCTP

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

The mechanism of discrimination against 2dNTPs by the multisubunit RNA polymerases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.205R free:0.218

Equivalence Class: 

NR_all_93869.1 

Eq. Class Rep:

6WOY

NDB ID:

 6TQA

PDB ID:

6TQA 

Release:

2020-05-27

Title:

X-ray structure of Roquin ROQ domain in complex with a UCP3 CDE2 SL RNA motif

Classification:

RNA BINDING PROTEIN

Authors:

Binas, O., Tants, J.N., Peter, S.A., Janowski, R., Davydova, E., Braun, J., Niessing, D., Schwalbe, H., Weigand, J.E., Schlundt, A.

Citation:

Structural basis for the recognition of transiently structured AU-rich elements by Roquin.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.196R free:0.259

Equivalence Class: 

NR_all_24985.1 

Eq. Class Rep:

6TQA

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