A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Feb-2017 number of released structures: 8763
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3239  Download results as an excel file       Gallery view

NDB ID:

2RVO

PDB ID:

2RVO 

Release:

2017-02-08

Title:

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish

Classification:

RNA

Authors:

Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.

Citation:

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5HO4

PDB ID:

5HO4 

Release:

2017-02-08

Title:

Crystal stucture of hnRNPA2B1 in omplex with 10-mer RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B.X., Su, S.C., Gan, J.H., Ma, J.B.

Citation:

Structure Basis for RNA-binding Properties of the RNA Recognition Motifs of hnRNPA2B1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.182R free:0.22

NDB ID:

5MSG

PDB ID:

5MSG 

Release:

2017-02-08

Title:

Influenza B polymerase bound to vRNA promoter and capped RNA primer

Classification:

VIRAL PROTEIN

Authors:

Reich, S., Guilligay, D., Cusack, S.

Citation:

An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.234R free:0.267

NDB ID:

5T16

PDB ID:

5T16 

Release:

2017-02-08

Title:

Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog

Classification:

hydrolase/rna

Authors:

Song, H., Fang, X., Jin, L., Shaw, G.X., Wang, Y.X., Ji, X.

Citation:

The Functional Cycle of Rnt1p: Five Consecutive Steps of Double-Stranded RNA Processing by a Eukaryotic RNase III.
Structure 25 pp.353 - 363 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.783Å R work:0.225R free:0.265

NDB ID:

5WTK

PDB ID:

5WTK 

Release:

2017-02-08

Title:

Crystal structure of RNP complex

Classification:

HYDROLASE/RNA

Authors:

Liu, L., Li, X., Wang, J., Wang, M., Chen, P., Yin, M., Li, J., Sheng, G., Wang, Y.

Citation:

Two Distant Catalytic Sites Are Responsible for C2c2 RNase Activities
Cell 168 pp.121 - 134.e12 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.651Å R work:0.258R free:0.271

NDB ID:

5HSW

PDB ID:

5HSW 

Release:

2017-02-01

Title:

KSHV SOX RNA complex

Classification:

HYDROLASE

Authors:

Lee, H., Patschull, A.O., Bagneris, C., Ryan, H., Sanderson, C.M., Ebrahimi, B., Nobeli, I., Barrett, T.E.

Citation:

KSHV SOX mediated host shutoff: the molecular mechanism underlying mRNA transcript processing.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.208R free:0.261

NDB ID:

5I8Q

PDB ID:

5I8Q 

Release:

2017-02-01

Title:

S. cerevisiae Prp43 in complex with RNA and ADPNP

Classification:

HYDROLASE

Authors:

He, Y., Nielsen, K.H., Andersen, G.R., Staley, J.

Citation:

Structure of helicase
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:4.2Å R work:0.26R free:0.286

NDB ID:

5U3G

PDB ID:

5U3G 

Release:

2017-02-01

Title:

Structure of the Dickeya dadantii ykkC riboswitch bound to guanidinium

Classification:

RNA

Authors:

Battaglia, R.A., Price, I.R., Ke, A.

Citation:

Structural Basis for Guanidine Sensing by the ykkC Family of Riboswitches.
RNA pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.192R free:0.212

NDB ID:

2N8L

PDB ID:

2N8L 

Release:

2017-01-25

Title:

Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the KH3 RNA target

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Nicastro, G., Candel, A.M., Ramos, A., Hollingworth, D.

Citation:

Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target GCACACCC
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2N8M

PDB ID:

2N8M 

Release:

2017-01-25

Title:

Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the KH4 RNA target

Classification:

RNA Binding Protein/RNA

Authors:

Nicastro, G., Ramos, A., Candel, A., Hollingworth, D.

Citation:

Zipcode-binding-protein-1 KH3(DD)KH4 domains in complex with the RNA target UCGGACU
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5DGE

PDB ID:

5DGE 

Release:

2017-01-25

Title:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Classification:

RIBOSOME

Authors:

Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.45Å R work:0.207R free:0.262

NDB ID:

5LTA

PDB ID:

5LTA 

Release:

2017-01-25

Title:

Crystal structure of the Prp43-ADP-BeF3-U7-RNA complex

Classification:

Protein/RNA

Authors:

Tauchert, M.J., Fourmann, J.B., Luhrmann, R., Ficner, R.

Citation:

Structural insights into the mechanism of the DEAH-box RNA helicase Prp43.
Elife 6 pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.621Å R work:0.197R free:0.229

NDB ID:

5LYS

PDB ID:

5LYS 

Release:

2017-01-25

Title:

The crystal structure of 7SK 5'-hairpin - Gold derivative

Classification:

RNA

Authors:

Martinez-Zapien, D., Legrand, P., McEwen, A.G., Proux, F., Cragnolini, T., Pasquali, S., Dock-Bregeon, A.C.

Citation:

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.32Å R work:0.184R free:0.227

NDB ID:

5LYU

PDB ID:

5LYU 

Release:

2017-01-25

Title:

The native crystal structure of 7SK 5'-hairpin

Classification:

RNA

Authors:

Martinez-Zapien, D., Legrand, P., McEwen, A.G., Proux, F., Cragnolini, T., Pasquali, S., Dock-Bregeon, A.C.

Citation:

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.191R free:0.239

NDB ID:

5LYV

PDB ID:

5LYV 

Release:

2017-01-25

Title:

The crystal structure of 7SK 5'-hairpin - Osmium derivative

Classification:

RNA

Authors:

Martinez-Zapien, D., Legrand, P., McEwen, A.G., Proux, F., Cragnolini, T., Pasquali, S., Dock-Bregeon, A.C.

Citation:

The crystal structure of the 5' functional domain of the transcription riboregulator 7SK.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.35Å R work:0.198R free:0.231

NDB ID:

5U30

PDB ID:

5U30 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-extended target DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.92Å R work:0.205R free:0.244

NDB ID:

5U31

PDB ID:

5U31 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.197R free:0.239

NDB ID:

5U33

PDB ID:

5U33 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA-extended non-target DNA ternary complex

Classification:

HYDROLASE/DNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.75Å R work:0.245R free:0.286

NDB ID:

5U34

PDB ID:

5U34 

Release:

2017-01-25

Title:

Crystal structure of AacC2c1-sgRNA binary complex

Classification:

HYDROLASE/RNA

Authors:

Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Citation:

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell 167 pp.1814 - 1828.e12 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.255Å R work:0.269R free:0.323

NDB ID:

5WQE

PDB ID:

5WQE 

Release:

2017-01-25

Title:

Crystal structure of Alicyclobacillus acidoterrestris C2c1 in complex with single-guide RNA at 3.1 Angstrom resolution

Classification:

RNA BINDING PROTEIN

Authors:

Liu, L., Chen, P., Wang, M., Li, X., Wang, J., Yin, M., Wang, Y.

Citation:

C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism
Mol. Cell 65 pp.310 - 322 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.126Å R work:0.237R free:0.268

NDB ID:

5WTY

PDB ID:

5WTY 

Release:

2017-01-25

Title:

Structure of Nop9 RNA complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wang, B., Ye, K.

Citation:

Nop9 binds the central pseudoknot region of 18S rRNA
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.785Å R work:0.176R free:0.237

NDB ID:

5HJZ

PDB ID:

5HJZ 

Release:

2017-01-18

Title:

Structure of M. tuberculosis MazF-mt1 (Rv2801c) in complex with RNA

Classification:

hydrolase/rna

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Structure of M. tuberculosis MazF-mt1 (Rv2801c) in complex with RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.976Å R work:0.206R free:0.23

NDB ID:

5HK0

PDB ID:

5HK0 

Release:

2017-01-18

Title:

Crystal structure of M. tuberculosis MazF-mt3 (Rv1991c) in complex with RNA

Classification:

hydrolase/rna

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Crystal structure of M. tuberculosis MazF-mt3 (Rv1991c) in complex with RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.212R free:0.256

NDB ID:

5HKC

PDB ID:

5HKC 

Release:

2017-01-18

Title:

Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with 8-mer RNA

Classification:

HYDROLASE/RNA

Authors:

Yen, T.J., Brennan, R.G.

Citation:

Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with 8-mer RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.68Å R work:0.2R free:0.231

NDB ID:

5M0H

PDB ID:

5M0H 

Release:

2017-01-18

Title:

Crystal structure of the central flexible region of ASH1 mRNA E3-localization element

Classification:

RNA

Authors:

Edelmann, F.T., Schlundt, A., Heym, R.G., Jenner, A., Niedner-Boblenz, A., Syed, M.I., Paillart, J.C., Stehle, R., Janowski, R., Sattler, M., Jansen, R.P., Niessing, D.

Citation:

Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
Nat. Struct. Mol. Biol. 24 pp.152 - 161 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.211R free:0.239

NDB ID:

5M0I

PDB ID:

5M0I 

Release:

2017-01-18

Title:

Crystal structure of the nuclear complex with She2p and the ASH1 mRNA E3-localization element

Classification:

TRANSPORT PROTEIN

Authors:

Edelmann, F.T., Schlundt, A., Heym, R.G., Jenner, A., Niedner-Boblenz, A., Syed, M.I., Paillart, J.C., Stehle, R., Janowski, R., Sattler, M., Jansen, R.P., Niessing, D.

Citation:

Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
Nat. Struct. Mol. Biol. 24 pp.152 - 161 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.41Å R work:0.189R free:0.234

NDB ID:

5M0J

PDB ID:

5M0J 

Release:

2017-01-18

Title:

Crystal structure of the cytoplasmic complex with She2p, She3p, and the ASH1 mRNA E3-localization element

Classification:

RNA BINDING PROTEIN

Authors:

Edelmann, F.T., Schlundt, A., Heym, R.G., Jenner, A., Niedner-Boblenz, A., Syed, M.I., Paillart, J.C., Stehle, R., Janowski, R., Sattler, M., Jansen, R.P., Niessing, D.

Citation:

Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
Nat. Struct. Mol. Biol. 24 pp.152 - 161 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.194R free:0.246

NDB ID:

5SUP

PDB ID:

5SUP 

Release:

2017-01-18

Title:

Structure of mRNA export factors

Classification:

HYDROLASE/RNA

Authors:

Ren, Y., Schmiege, P., Blobel, G.

Citation:

Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1.
Elife 6 pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.218R free:0.267

NDB ID:

5TGM

PDB ID:

5TGM 

Release:

2017-01-18

Title:

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Classification:

ribosome

Authors:

Melnikov, S., Mailliot, J., Rigger, L., Neuner, S., Shin, B.S., Yusupova, G., Dever, T.E., Micura, R., Yusupov, M.

Citation:

Molecular insights into protein synthesis with proline residues.
EMBO Rep. 17 pp.1776 - 1784 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.26R free:0.311

NDB ID:

5KPY

PDB ID:

5KPY 

Release:

2017-01-11

Title:

Structure of a 5-hydroxytryptophan aptamer

Classification:

RNA

Authors:

Porter, E.B., Polaski, J.T., Morck, M.M., Batey, R.T.

Citation:

Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors.
Nat. Chem. Biol. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.216R free:0.258

NDB ID:

5MFX

PDB ID:

5MFX 

Release:

2017-01-11

Title:

Zika NS3 helicase:RNA complex

Classification:

HYDROLASE

Authors:

Jenkins, H.T., Ge, M., Chechik, M., Greive, S.J., Antson, A.A.

Citation:

How Zika virus NS3 helicase grips the first nucleotide of the leading RNA strand
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.598Å R work:0.161R free:0.191

NDB ID:

5MJV

PDB ID:

5MJV 

Release:

2017-01-11

Title:

Rebuild and re-refined model for Human Parechovirus 1

Classification:

VIRUS

Authors:

Shakeel, S., Dykeman, E.C., White, S.J., Ora, A., Cockburn, J.J.B., Butcher, S.J., Stockley, P.G., Twarock, R.

Citation:

Genomic RNA folding mediates assembly of human parechovirus
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.09Å R work:0.258R free:0.261

NDB ID:

5T83

PDB ID:

5T83 

Release:

2017-01-11

Title:

Structure of a guanidine-I riboswitch from S. acidophilus

Classification:

RNA

Authors:

Reiss, C.W., Xiong, Y., Strobel, S.A.

Citation:

Structural Basis for Ligand Binding to the Guanidine-I Riboswitch.
Structure 25 pp.195 - 202 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.71Å R work:0.2R free:0.225

NDB ID:

5TDJ

PDB ID:

5TDJ 

Release:

2017-01-11

Title:

RNA decamer duplex with four 2'-5'-linkages

Classification:

RNA

Authors:

Shen, F., Luo, Z., Liu, H., Wang, R., Zhang, S., Gan, J., Sheng, J.

Citation:

Structural insights into RNA duplexes with multiple 2'-5'-linkages.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.152R free:0.17

NDB ID:

5TDK

PDB ID:

5TDK 

Release:

2017-01-11

Title:

RNA decamer duplex with eight 2'-5'-linkages

Classification:

RNA

Authors:

Shen, F., Luo, Z., Liu, H., Wang, R., Zhang, S., Gan, J., Sheng, J.

Citation:

Structural insights into RNA duplexes with multiple 2'-5'-linkages.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.43Å R work:0.167R free:0.205

NDB ID:

5TF6

PDB ID:

5TF6 

Release:

2017-01-11

Title:

Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Didychuk, A.L., Liao, H., Hu, P., Brow, D.A., Butcher, S.E.

Citation:

Structure and conformational plasticity of the U6 small nuclear ribonucleoprotein core.
Acta Crystallogr D Struct Biol 73 pp.1 - 8 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.185R free:0.231

NDB ID:

5HAB

PDB ID:

5HAB 

Release:

2017-01-04

Title:

Crystal structure of mpy-RNase J (mutant H84A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA

Classification:

HYDROLASE

Authors:

Zheng, X., Feng, N., Li, D.F., Li, J., Dong, X.Z.

Citation:

Molecular insights into catalysis and processive exonucleolytic mechanisms of prokaryotic RNase J revealing striking parallels with that of eukaryotic Xrn1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.206R free:0.24

NDB ID:

5H3U

PDB ID:

5H3U 

Release:

2016-12-28

Title:

Sm RNA bound to GEMIN5-WD

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Tang, X., Bharath, S.R., Piao, S., Tan, V.Q., Bowler, M.W., Song, H.

Citation:

Structural basis for specific recognition of pre-snRNA by Gemin5
Cell Res. 26 pp.1353 - 1356 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.499Å R work:0.201R free:0.256

NDB ID:

5HL7

PDB ID:

5HL7 

Release:

2016-12-21

Title:

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Classification:

RIBOSOME

Authors:

Eyal, Z., Matzov, D., Krupkin, M., Paukner, S., Riedl, R., Rozenberg, H., Zimmerman, E., Bashan, A., Yonath, A.

Citation:

A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism.
Sci Rep 6 pp.39004 - 39004 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.55Å R work:0.186R free:0.226

NDB ID:

5L2L

PDB ID:

5L2L 

Release:

2016-12-21

Title:

Nab2 Zn fingers 5-7 bound to A11G RNA

Classification:

RNA BINDING PROTEIN

Authors:

Aibara, S., Gordon, J.M., Riesterer, A.S., McLaughlin, S.H., Stewart, M.

Citation:

Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.13R free:0.151

NDB ID:

5M3H

PDB ID:

5M3H 

Release:

2016-12-21

Title:

Bat influenza A/H17N10 polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD

Classification:

TRANSFERASE

Authors:

Lukarska, M., Fournier, G., Pflug, A., Resa-Infante, P., Reich, S., Naffakh, N., Cusack, S.

Citation:

Structural basis of an essential interaction between influenza polymerase and Pol II CTD.
Nature 541 pp.117 - 121 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.209R free:0.244

NDB ID:

5M3J

PDB ID:

5M3J 

Release:

2016-12-21

Title:

Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD

Classification:

VIRAL PROTEIN

Authors:

Lukarska, M., Fournier, G., Pflug, A., Resa-Infante, P., Reich, S., Naffakh, N., Cusack, S.

Citation:

Structural basis of an essential interaction between influenza polymerase and Pol II CTD.
Nature 541 pp.117 - 121 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.238R free:0.268

NDB ID:

5DGF

PDB ID:

5DGF 

Release:

2016-12-14

Title:

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Classification:

Ribosome

Authors:

Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.25R free:0.309

NDB ID:

5DGV

PDB ID:

5DGV 

Release:

2016-12-14

Title:

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Classification:

Ribosome

Authors:

Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.237R free:0.284

NDB ID:

5F6C

PDB ID:

5F6C 

Release:

2016-12-14

Title:

The structure of E. coli RNase E catalytically inactive mutant with RNA bound

Classification:

HYDROLASE

Authors:

Bandyra, K.J., Luisi, B.F.

Citation:

The structure of E. coli RNase E catalytically inactive mutant with RNA bound
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.002Å R work:0.174R free:0.249

NDB ID:

5J01

PDB ID:

5J01 

Release:

2016-12-14

Title:

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Classification:

RNA

Authors:

Costa, M., Walbott, H., Monachello, D., Westhof, E., Michel, F.

Citation:

Crystal structures of a group II intron lariat primed for reverse splicing.
Science 354 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.39Å R work:0.204R free:0.233

NDB ID:

5J02

PDB ID:

5J02 

Release:

2016-12-14

Title:

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.

Classification:

RNA

Authors:

Costa, M., Walbott, H., Monachello, D., Westhof, E., Michel, F.

Citation:

Crystal structures of a group II intron lariat primed for reverse splicing.
Science 354 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.493Å R work:0.202R free:0.227

NDB ID:

5LWJ

PDB ID:

5LWJ 

Release:

2016-12-14

Title:

Solution NMR structure of the GTP binding Class II RNA aptamer-ligand-complex containing a protonated adenine nucleotide with a highly shifted pKa.

Classification:

RNA

Authors:

Wolter, A.C., Weickhmann, A.K., Nasiri, A.H., Hantke, K., Ohlenschlager, O., Wunderlich, C.H., Kreutz, C., Duchardt-Ferner, E., Wohnert, J.

Citation:

A Stably Protonated Adenine Nucleotide with a Highly Shifted pKa Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer.
Angew. Chem. Int. Ed. Engl. 56 pp.401 - 404 2017

Experiment:

SOLUTION NMR

NDB ID:

5T7B

PDB ID:

5T7B 

Release:

2016-12-14

Title:

Argonaute-2 - 5'-(E)-vinylphosphonate 2'-O-methyl-uridine modified mrTTR guide RNA complex

Classification:

HYDROLASE/RNA

Authors:

Elkayam, E., Joshua-Tor, L.

Citation:

Protein structure
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.529Å R work:0.193R free:0.238

NDB ID:

5TPY

PDB ID:

5TPY 

Release:

2016-12-14

Title:

Crystal structure of an exonuclease resistant RNA from Zika virus

Classification:

RNA

Authors:

Akiyama, B.M., Laurence, H.M., Massey, A.R., Costantino, D.A., Xie, X., Yang, Y., Shi, P.Y., Nix, J.C., Beckham, J.D., Kieft, J.S.

Citation:

Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease.
Science 354 pp.1148 - 1152 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.805Å R work:0.19R free:0.217