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As of 25-Feb-2015 number of released structures: 7393
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2698  Download results as an excel file       Gallery view

NDB ID:

 2MXY

PDB ID:

2MXY 

Release:

2015-02-25

Title:

Solution structure of hnRNP C RRM in complex with 5'-AUUUUUC-3' RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Cienikova, Z., Damberger, F.F., Hall, J., Allain, F.H., Maris, C.

Citation:

Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif.
J.Am.Chem.Soc. 136 pp.14536 - 14544 2014

Experiment:

 SOLUTION NMR

NDB ID:

 4X9E

PDB ID:

4X9E 

Release:

2015-02-25

Title:

DEOXYGUANOSINETRIPHOSPHATE TRIPHOSPHOHYDROLASE from Escherichia coli with two DNA effector molecules

Classification:

HYDROLASE/DNA

Authors:

Singh, D., Gawel, D., Itsko, M., Hochkoeppler, A., Krahn, J.M., London, R.E., Schaaper, R.M.

Citation:

Structure of Escherichia coli dGTP Triphosphohydrolase: A Hexameric Enzyme With DNA Effector Molecules
J.Biol.Chem. pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.166R free:0.222

NDB ID:

 4XEJ

PDB ID:

4XEJ 

Release:

2015-02-25

Title:

IRES bound to bacterial Ribosome

Classification:

Ribosome

Authors:

Colussi, T.M., Costantino, D.A., Zhu, J., Donohue, J.P., Korostelev, A.A., Jaafar, Z.A., Plank, T.D., Noller, H.F., Kieft, J.S.

Citation:

Initiation of translation in bacteria by a structured eukaryotic IRES RNA.
Nature pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.8Å R work:0.246R free:0.284

NDB ID:

 4PHY

PDB ID:

4PHY 

Release:

2015-02-18

Title:

Functional conservation despite structural divergence in ligand-responsive RNA switches

Classification:

RNA

Authors:

Boerneke, M.A., Dibrov, S.M., Gu, J., Wyles, D.L., Hermann, T.

Citation:

Functional conservation despite structural divergence in ligand-responsive RNA switches.
Proc.Natl.Acad.Sci.USA 111 pp.15952 - 15957 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.214R free:0.267

NDB ID:

 4WQS

PDB ID:

4WQS 

Release:

2015-02-18

Title:

Thermus thermophilus RNA polymerase backtracked complex

Classification:

TRANSFERASE/DNA/RNA

Authors:

Sekine, S.I., Murayama, Y., Svetlov, V., Nudler, E., Yokoyama, S.

Citation:

The Ratcheted and Ratchetable Structural States of RNA Polymerase Underlie Multiple Transcriptional Functions.
Mol.Cell 57 pp.408 - 421 2015

Experiment:

 X-RAY DIFFRACTION Resolution:4.306Å R work:0.28R free:0.311

NDB ID:

 4WTA

PDB ID:

4WTA 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH UDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.175R free:0.224

NDB ID:

 4WTC

PDB ID:

4WTC 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH CDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-AGAAAUUU

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.75Å R work:0.178R free:0.229

NDB ID:

 4WTD

PDB ID:

4WTD 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH ADP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-AUAAAUUU

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.181R free:0.223

NDB ID:

 4WTE

PDB ID:

4WTE 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GDP, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-ACAAAUUU

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.18R free:0.218

NDB ID:

 4WTF

PDB ID:

4WTF 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.65Å R work:0.187R free:0.233

NDB ID:

 4WTG

PDB ID:

4WTG 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH SOFOSBUVIR DIPHOSPHATE GS-607596, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.179R free:0.231

NDB ID:

 4WTI

PDB ID:

4WTI 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-ACGG, RNA PRIMER 5'-PCC, MN2+, AND GDP

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.18R free:0.233

NDB ID:

 4WTJ

PDB ID:

4WTJ 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-AUCC, RNA PRIMER 5'-PGG, MN2+, AND ADP

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.175R free:0.21

NDB ID:

 4WTK

PDB ID:

4WTK 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-AGCC, RNA PRIMER 5'-PGG, MN2+, AND CDP

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.184R free:0.224

NDB ID:

 4WTL

PDB ID:

4WTL 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-UACC, RNA PRIMER 5'-PGG, MN2+, AND UDP

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.202R free:0.234

NDB ID:

 4WTM

PDB ID:

4WTM 

Release:

2015-02-11

Title:

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-UAGG, RNA PRIMER 5'-PCC, MN2+, AND UDP

Classification:

Transferase/RNA

Authors:

Appleby, T.C., Perry, J.K., Murakami, E., Barauskas, O., Feng, J., Cho, A., Fox, D., Wetmore, D.R., McGrath, M.E., Ray, A.S., Sofia, M.J., Swaminathan, S., Edwards, T.E.

Citation:

Structural basis for RNA replication by the hepatitis C virus polymerase.
Science 347 pp.771 - 775 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.185R free:0.216

NDB ID:

 4X4N

PDB ID:

4X4N 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix

Classification:

transferase/RNA

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.953Å R work:0.191R free:0.248

NDB ID:

 4X4O

PDB ID:

4X4O 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix and CTP

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.201Å R work:0.209R free:0.251

NDB ID:

 4X4P

PDB ID:

4X4P 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCAC

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.223R free:0.273

NDB ID:

 4X4Q

PDB ID:

4X4Q 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCAC and CTP

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.15Å R work:0.225R free:0.284

NDB ID:

 4X4R

PDB ID:

4X4R 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACC and AMPcPP

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.202Å R work:0.208R free:0.266

NDB ID:

 4X4S

PDB ID:

4X4S 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACC and CTP

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.25Å R work:0.219R free:0.275

NDB ID:

 4X4T

PDB ID:

4X4T 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACCA

Classification:

transferase/RNA

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.186R free:0.229

NDB ID:

 4X4U

PDB ID:

4X4U 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACC

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.182R free:0.233

NDB ID:

 4X4V

PDB ID:

4X4V 

Release:

2015-02-11

Title:

Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACC and AMPcPP

Classification:

RNA BINDING PROTEIN

Authors:

Kuhn, C.D., Wilusz, J.E., Zheng, Y., Beal, P.A., Joshua-Tor, L.

Citation:

On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell 160 pp.644 - 658 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.184R free:0.237

NDB ID:

 4XK0

PDB ID:

4XK0 

Release:

2015-02-11

Title:

Crystal structure of a tetramolecular RNA G-quadruplex in potassium

Classification:

RNA

Authors:

Chen, M.C., Murat, P., Abecassis, K., Ferre-D'Amare, A.R., Balasubramanian, S.

Citation:

Insights into the mechanism of a G-quadruplex-unwinding DEAH-box helicase.
Nucleic Acids Res. pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:1.08Å

NDB ID:

 NA3041

PDB ID:

4QG3 

Release:

2015-02-11

Title:

Crystal structure of mutant ribosomal protein G219V TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Classification:

RIBOSOMAL PROTEIN/RNA

Authors:

Tishchenko, S., Kostareva, O., Gabdulkhakov, A., Mikhaylina, A., Nikonova, E., Nevskaya, N., Sarskikh, A., Piendl, W., Garber, M., Nikonov, S.

Citation:

Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions.
Acta Crystallogr.,Sect.D 71 pp.376 - 386 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.199R free:0.225

NDB ID:

 NA3138

PDB ID:

4QVI 

Release:

2015-02-11

Title:

Crystal structure of mutant ribosomal protein M218L TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Classification:

RIBOSOMAL PROTEIN/RNA

Authors:

Tishchenko, S., Kostareva, O., Gabdulkhakov, A., Mikhaylina, A., Nikonova, E., Nevskaya, N., Sarskikh, A., Piendl, W., Garber, M., Nikonov, S.

Citation:

Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions.
Acta Crystallogr.,Sect.D 71 pp.376 - 386 2015

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.193R free:0.216

NDB ID:

 NA3354

PDB ID:

4S2X 

Release:

2015-02-11

Title:

Structure of E. coli RppH bound to RNA and two magnesium ions

Classification:

hydrolase/RNA

Authors:

Vasilyev, N., Serganov, A.

Citation:

Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5'-End-Dependent mRNA Decay*
J.Biol.Chem. pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.188R free:0.215

NDB ID:

 NA3355

PDB ID:

4S2Y 

Release:

2015-02-11

Title:

Structure of E. coli RppH bound to RNA and three magnesium ions

Classification:

hydrolase/RNA

Authors:

Vasilyev, N., Serganov, A.

Citation:

Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5'-End-Dependent mRNA Decay*
J.Biol.Chem. pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.172R free:0.198

NDB ID:

 4X67

PDB ID:

4X67 

Release:

2015-02-04

Title:

Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions.

Classification:

TRANSCRIPTION/DNA

Authors:

Walmacq, C., Wang, L., Chong, J., Scibelli, K., Lubkowska, L., Gnatt, A., Brooks, P.J., Wang, D., Kashlev, M.

Citation:

Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions.
Proc.Natl.Acad.Sci.USA 112 pp.E410 - E419 2015

Experiment:

 X-RAY DIFFRACTION Resolution:4.1Å R work:0.242R free:0.289

NDB ID:

 4X6A

PDB ID:

4X6A 

Release:

2015-02-04

Title:

Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions

Classification:

TRANSCRIPTION/DNA

Authors:

Walmacq, C., Wang, L., Chong, J., Scibelli, K., Lubkowska, L., Gnatt, A., Brooks, P.J., Wang, D., Kashlev, M.

Citation:

Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions.
Proc.Natl.Acad.Sci.USA 112 pp.E410 - E419 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.96Å R work:0.248R free:0.296

NDB ID:

 NA3351

PDB ID:

4S20 

Release:

2015-02-04

Title:

Structural basis for transcription reactivation by RapA

Classification:

TRANSFERASE/DNA/RNA

Authors:

Liu, B., Zuo, Y., Steitz, T.A.

Citation:

Structural basis for transcription reactivation by RapA.
Proc.Natl.Acad.Sci.USA pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:4.7Å R work:0.273R free:0.369

NDB ID:

 2MS5

PDB ID:

2MS5 

Release:

2015-01-28

Title:

Structural dynamics of double-helical RNA having CAG motif

Classification:

RNA

Authors:

Kumar, A., Tawani, A.

Citation:

Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs)
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 4TZ6

PDB ID:

4TZ6 

Release:

2015-01-28

Title:

DEAD-box helicase Mss116 bound to ssRNA and UDP-BeF

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Mallam, A.L., Sidote, D.J., Lambowitz, A.M.

Citation:

Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife 4 pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.209Å R work:0.219R free:0.269

NDB ID:

 4WPO

PDB ID:

4WPO 

Release:

2015-01-28

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Classification:

Ribosome

Authors:

Lin, J., Gagnon, M.G., Bulkley, D., Steitz, T.A.

Citation:

Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell 160 pp.219 - 227 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.202R free:0.252

NDB ID:

 4WQF

PDB ID:

4WQF 

Release:

2015-01-28

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Classification:

RIBOSOME

Authors:

Lin, J., Gagnon, M.G., Bulkley, D., Steitz, T.A.

Citation:

Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell 160 pp.219 - 227 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.2R free:0.254

NDB ID:

 4WQU

PDB ID:

4WQU 

Release:

2015-01-28

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Classification:

Ribosome/antibiotic

Authors:

Lin, J., Gagnon, M.G., Bulkley, D., Steitz, T.A.

Citation:

Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell 160 pp.219 - 227 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.209R free:0.263

NDB ID:

 4WQY

PDB ID:

4WQY 

Release:

2015-01-28

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Classification:

Ribosome

Authors:

Lin, J., Gagnon, M.G., Bulkley, D., Steitz, T.A.

Citation:

Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell 160 pp.219 - 227 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.221R free:0.266

NDB ID:

 4WT8

PDB ID:

4WT8 

Release:

2015-01-21

Title:

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Classification:

RIBOSOME

Authors:

Amunts, A., Fiedorczuk, K., Truong, T.T., Chandler, J., Peter Greenberg, E., Ramakrishnan, V.

Citation:

Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics.
J.Mol.Biol. 427 pp.753 - 755 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.204R free:0.241

NDB ID:

 4WUS

PDB ID:

4WUS 

Release:

2015-01-21

Title:

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Classification:

RIBOSOME

Authors:

Amunts, A., Fiedorczuk, K., Truong, T.T., Chandler, J., Peter Greenberg, E., Ramakrishnan, V.

Citation:

Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics.
J.Mol.Biol. 427 pp.753 - 755 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.204R free:0.241

NDB ID:

 4WWE

PDB ID:

4WWE 

Release:

2015-01-21

Title:

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Classification:

ribosome

Authors:

Amunts, A., Fiedorczuk, K., Truong, T.T., Chandler, J., Peter Greenberg, E., Ramakrishnan, V.

Citation:

Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics.
J.Mol.Biol. 427 pp.753 - 755 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.204R free:0.241

NDB ID:

 4WWT

PDB ID:

4WWT 

Release:

2015-01-21

Title:

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Classification:

RIBOSOME

Authors:

Amunts, A., Fiedorczuk, K., Truong, T.T., Chandler, J., Peter Greenberg, E., Ramakrishnan, V.

Citation:

Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics.
J.Mol.Biol. 427 pp.753 - 755 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.204R free:0.241

NDB ID:

 4V2S

PDB ID:

4V2S 

Release:

2015-01-14

Title:

Crystal structure of Hfq in complex with the sRNA RydC

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Dimastrogiovanni, D., Frohlich, K.S., Bandyra, K.J., Bruce, H.A., Hohensee, S., Vogel, J., Luisi, B.F.

Citation:

Recognition of the Small Regulatory RNA Rydc by the Bacterial Hfq Protein.
Elife 3 pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.48Å R work:0.216R free:0.281

NDB ID:

 4WZJ

PDB ID:

4WZJ 

Release:

2015-01-14

Title:

Spliceosomal U4 snRNP core domain

Classification:

SPLICING

Authors:

Leung, A.K., Nagai, K., Li, J.

Citation:

Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis.
Nature 473 pp.536 - 539 2011

Experiment:

 X-RAY DIFFRACTION Resolution:3.6Å R work:0.176R free:0.223

NDB ID:

 4PDQ

PDB ID:

4PDQ 

Release:

2015-01-07

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analog

Classification:

RNA/ANTIBIOTIC

Authors:

Hanessian, S., Saavedra, O.M., Vilchis-Reyes, M.A., Maianti, J.P., Kanazawa, H., Dozzo, P., Matias, R.D., Serio, A., Kondo, J.

Citation:

Synthesis, broad spectrum antibacterial activity, and X-ray co-crystal structure of the decoding bacterial ribosomal A-site with 4'-deoxy-4'-fluoro neomycin analogs
Chem Sci 5 pp.4621 - 4632 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.194R free:0.236

NDB ID:

 4PJO

PDB ID:

4PJO 

Release:

2014-12-31

Title:

Minimal U1 snRNP

Classification:

SPLICING

Authors:

Kondo, Y., Oubridge, C., van Roon, A.M., Nagai, K.

Citation:

Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.
Elife 4 pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:3.3Å R work:0.206R free:0.254

NDB ID:

 4PKD

PDB ID:

4PKD 

Release:

2014-12-31

Title:

U1-70k in complex with U1 snRNA stem-loops 1 and U1-A RRM in complex with stem-loop 2

Classification:

GENE REGULATION

Authors:

Kondo, Y., Oubridge, C., van Roon, A.M., Nagai, K.

Citation:

Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.
Elife 4 pp. - 2015

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.196R free:0.257

NDB ID:

 4TYW

PDB ID:

4TYW 

Release:

2014-12-31

Title:

DEAD-box helicase Mss116 bound to ssRNA and ADP-BeF

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Mallam, A.L., Sidote, D.J., Lambowitz, A.M.

Citation:

Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife 4 pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.197Å R work:0.216R free:0.253

NDB ID:

 4TYY

PDB ID:

4TYY 

Release:

2014-12-31

Title:

DEAD-box helicase Mss116 bound to ssRNA and CDP-BeF

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Mallam, A.L., Sidote, D.J., Lambowitz, A.M.

Citation:

Molecular insights into RNA and DNA helicase evolution from the determinants of specificity for a DEAD-box RNA helicase.
Elife 4 pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.74Å R work:0.223R free:0.266

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