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As of 17-Jan-2018 number of released structures: 9301
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3445  Download results as an excel file       Gallery view

NDB ID:

5MRX

PDB ID:

5MRX 

Release:

2018-01-17

Title:

27-nt SRL with a 5-hydroxymethyl cytidine modification

Classification:

RNA

Authors:

Ennifar, E., Micura, R.

Citation:

Xray structure of 5hmrc-modified RNA at atomic resolution
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:0.851Å R work:0.145R free:0.168

NDB ID:

5WWE

PDB ID:

5WWE 

Release:

2018-01-17

Title:

Crystal structure of hnRNPA2B1 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B.X., Su, S.C., Ma, J.B.

Citation:

Structure of hnRNPA2B1 in complex with AGGGACUAGC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.224R free:0.274

NDB ID:

5WWF

PDB ID:

5WWF 

Release:

2018-01-17

Title:

Crystal structure of hnRNPA2B1 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B.X., Su, S.C., Ma, J.B.

Citation:

Crystal structure of hnRNPA2B1 in complex with AAGGACGAGC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.202R free:0.257

NDB ID:

5WWG

PDB ID:

5WWG 

Release:

2018-01-17

Title:

Crystal structure of hnRNPA2B1 in complex with AAGGACUUGC

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B.X., Su, S.C., Ma, J.B.

Citation:

Crystal structure of hnRNPA2B1 in complex with AAGGACUUGC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.03Å R work:0.198R free:0.256

NDB ID:

6F3H

PDB ID:

6F3H 

Release:

2018-01-17

Title:

Crystal structure of Dss1 exoribonuclease active site mutant D477N from Candida glabrata

Classification:

HYDROLASE

Authors:

Razew, M., Warkocki, Z., Taube, M., Kolondra, A., Czarnocki-Cieciura, M., Nowak, E., Labedzka-Dmoch, K., Kawinska, A., Piatkowski, J., Golik, P., Kozak, M., Dziembowski, A., Nowotny, M.

Citation:

Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components.
Nat Commun 9 pp.97 - 97 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.703Å R work:0.195R free:0.24

NDB ID:

6F4A

PDB ID:

6F4A 

Release:

2018-01-17

Title:

Yeast mitochondrial RNA degradosome complex mtEXO

Classification:

HYDROLASE

Authors:

Razew, M., Warkocki, Z., Taube, M., Kolondra, A., Czarnocki-Cieciura, M., Nowak, E., Labedzka-Dmoch, K., Kawinska, A., Piatkowski, J., Golik, P., Kozak, M., Dziembowski, A., Nowotny, M.

Citation:

Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components.
Nat Commun 9 pp.97 - 97 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.55Å R work:0.296R free:0.327

NDB ID:

6BBO

PDB ID:

6BBO 

Release:

2018-01-10

Title:

Crystal structure of human APOBEC3H/RNA complex

Classification:

HYDROLASE/RNA

Authors:

Shaban, N.M., Shi, K., Lauer, K.V., Carpenter, M.A., Richards, C.M., Salamango, D., Wang, J., Lopresti, M.W., Banerjee, S., Levin-Klein, R., Brown, W.L., Aihara, H., Harris, R.S.

Citation:

The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism.
Mol. Cell 69 pp.75 - 86.e9 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.428Å R work:0.363R free:0.392

NDB ID:

6BSG

PDB ID:

6BSG 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in an RNA hydrolysis-off mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.44Å R work:0.19R free:0.224

NDB ID:

6BSH

PDB ID:

6BSH 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with RNA/DNA hybrid in the RNA hydrolysis mode

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.649Å R work:0.189R free:0.227

NDB ID:

6BSI

PDB ID:

6BSI 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid containing the polypurine-tract sequence

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.192R free:0.24

NDB ID:

6BSJ

PDB ID:

6BSJ 

Release:

2018-01-03

Title:

Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis

Classification:

viral protein/dna/rna/inhibitor

Authors:

Tian, L., Kim, M., Li, H., Wang, J., Yang, W.

Citation:

What it takes for HIV-1 Reverse Transcriptase to cleave RNA template
Proc.Natl.Acad.Sci.Usa pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.89Å R work:0.2R free:0.25

NDB ID:

6EZ0

PDB ID:

6EZ0 

Release:

2018-01-03

Title:

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding

Classification:

RNA

Authors:

Erat, M.C., Besic, E., Oberhuber, M., Johannsen, S., Sigel, R.K.O.

Citation:

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding.
J. Biol. Inorg. Chem. 23 pp.167 - 177 2018

Experiment:

SOLUTION NMR

NDB ID:

5Y6Z

PDB ID:

5Y6Z 

Release:

2017-12-27

Title:

Crystal structure of the coxsackievirus A16 polymerase elongation complex

Classification:

TRANSFERASE/RNA

Authors:

Bi, P., Shu, B., Gong, P.

Citation:

Crystal structure of the coxsackievirus A16 RNA-dependent RNA polymerase elongation complex reveals novel features in motif A dynamics
Virol Sin 32 pp.548 - 552 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.218R free:0.259

NDB ID:

6B14

PDB ID:

6B14 

Release:

2017-12-27

Title:

Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N

Classification:

immune system/rna

Authors:

Koirala, D.K., Shelke, S.A., Dupont, M., Ruiz, S., DasGupta, S., Bailey, L.J., Benner, S.A., Piccirilli, J.A.

Citation:

Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.64Å R work:0.212R free:0.226

NDB ID:

6B3K

PDB ID:

6B3K 

Release:

2017-12-27

Title:

Crystal structure of mutant Spinach RNA aptamer in complex with Fab BL3-6

Classification:

immune system/rna

Authors:

Koirala, D.K., Shelke, S.A., Dupont, M., Ruiz, S., DasGupta, S., Bailey, L.J., Benner, S.A., Piccirilli, J.A.

Citation:

Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.192R free:0.225

NDB ID:

5ML7

PDB ID:

5ML7 

Release:

2017-12-20

Title:

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI

Classification:

RNA

Authors:

Gabdulkhakov, A.G., Tishchenko, T.V., Nevskaya, N.A., Nikonov, S.V.

Citation:

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.226R free:0.291

NDB ID:

5NS3

PDB ID:

5NS3 

Release:

2017-12-20

Title:

Crystal structures of Cy5 cyanine fluorophores stacked onto the end of double-stranded RNA

Classification:

RNA

Authors:

Liu, Y., Lilley, D.M.J.

Citation:

Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
Biophys. J. 113 pp.2336 - 2343 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.251R free:0.274

NDB ID:

5NS4

PDB ID:

5NS4 

Release:

2017-12-20

Title:

Crystal structures of Cy3 cyanine fluorophores stacked onto the end of double-stranded RNA

Classification:

RNA BINDING PROTEIN

Authors:

Liu, Y., Lilley, D.M.J.

Citation:

Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
Biophys. J. 113 pp.2336 - 2343 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.259R free:0.282

NDB ID:

5Y58

PDB ID:

5Y58 

Release:

2017-12-20

Title:

Crystal structure of Ku70/80 and TLC1

Classification:

RNA BINDING PROTEIN

Authors:

Chen, H., Xue, J., Wu, J., Lei, M.

Citation:

Structural insights into yeast telomerase recruitment to telomeres
To Be Published pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.215R free:0.257

NDB ID:

5NDG

PDB ID:

5NDG 

Release:

2017-12-13

Title:

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J.P., Urzhumtsev, A., Ferguson, A., Chang, C.T., Yusupov, M., Blanchard, S.C., Yusupova, G.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E10899 - E10908 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.209R free:0.252

NDB ID:

5NDK

PDB ID:

5NDK 

Release:

2017-12-13

Title:

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J.P., Urzhumtsev, A., Ferguson, A., Chang, C.T., Yusupov, M., Blanchard, S.C., Yusupova, G.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E10899 - E10908 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.212R free:0.253

NDB ID:

5NDV

PDB ID:

5NDV 

Release:

2017-12-13

Title:

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J.P., Urzhumtsev, A., Ferguson, A., Chang, C.T., Yusupov, M., Blanchard, S.C., Yusupova, G.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E10899 - E10908 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.202R free:0.25

NDB ID:

5NDW

PDB ID:

5NDW 

Release:

2017-12-13

Title:

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J.P., Urzhumtsev, A., Ferguson, A., Chang, C.T., Yusupov, M., Blanchard, S.C., Yusupova, G.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E10899 - E10908 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.191R free:0.234

NDB ID:

5OBM

PDB ID:

5OBM 

Release:

2017-12-13

Title:

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J.P., Urzhumtsev, A., Ferguson, A., Chang, C.T., Yusupov, M., Blanchard, S.C., Yusupova, G.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E10899 - E10908 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.188R free:0.237

NDB ID:

5WT1

PDB ID:

5WT1 

Release:

2017-12-13

Title:

Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA

Classification:

TRANSFERASE/RNA

Authors:

Wang, C., Jia, Q., Zeng, J., Chen, R., Xie, W.

Citation:

Structural insight into the methyltransfer mechanism of the bifunctional Trm5
Sci Adv 3 pp.e1700195 - e1700195 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.598Å R work:0.247R free:0.274

NDB ID:

5WT3

PDB ID:

5WT3 

Release:

2017-12-13

Title:

Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA

Classification:

TRANSFERASE/RNA

Authors:

Wang, C., Jia, Q., Zeng, J., Chen, R., Xie, W.

Citation:

Structural insight into the methyltransfer mechanism of the bifunctional Trm5
Sci Adv 3 pp.e1700195 - e1700195 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.204Å R work:0.246R free:0.256

NDB ID:

5X3Z

PDB ID:

5X3Z 

Release:

2017-12-13

Title:

Solution structure of musashi1 RBD2 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Iwaoka, R., Nagata, T., Tsuda, K., Imai, T., Okano, H., Kobayashi, N., Katahira, M.

Citation:

Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
Molecules 22 pp. - 2017

Experiment:

SOLUTION NMR

NDB ID:

6EVJ

PDB ID:

6EVJ 

Release:

2017-12-13

Title:

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and capped RNA primer

Classification:

VIRAL PROTEIN

Authors:

Pflug, A., Gaudon, S., Resa-Infante, P., Lethier, M., Reich, S., Schulze, W.M., Cusack, S.

Citation:

Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.9Å R work:0.206R free:0.245

NDB ID:

6EVK

PDB ID:

6EVK 

Release:

2017-12-13

Title:

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and cap analogue m7GTP

Classification:

VIRAL PROTEIN

Authors:

Pflug, A., Gaudon, S., Resa-Infante, P., Lethier, M., Reich, S., Schulze, W.M., Cusack, S.

Citation:

Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Nucleic Acids Res. pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.233R free:0.272

NDB ID:

5WS2

PDB ID:

5WS2 

Release:

2017-12-06

Title:

Crystal structure of mpy-RNase J (mutant S247A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA

Classification:

HYDROLASE

Authors:

Zheng, X., Feng, N., Li, D., Dong, X., Li, J.

Citation:

New molecular insights into an archaeal RNase J reveal a conserved processive exoribonucleolysis mechanism of the RNase J family
Mol. Microbiol. 106 pp.351 - 366 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.398Å R work:0.173R free:0.208

NDB ID:

5X6B

PDB ID:

5X6B 

Release:

2017-12-06

Title:

Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, M., Kato, K., Kubo, Y., Tanaka, Y., Liu, Y., Long, F., Whitman, W.B., Lill, P., Gatsogiannis, C., Raunser, S., Shimizu, N., Shinoda, A., Nakamura, A., Tanaka, I., Yao, M.

Citation:

Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun 8 pp.1521 - 1521 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.596Å R work:0.224R free:0.261

NDB ID:

6BGB

PDB ID:

6BGB 

Release:

2017-12-06

Title:

Crystal Structure of the 16mer GCAGNCUUAAGUCUGC containing BrPh 7-triazolyl-8-aza-7-deazaadenosine

Classification:

RNA

Authors:

Suter, S.R., Ball-Jones, A., Mumbleau, M.M., Valenzuela, R., Ibarra-Soza, J., Owens, H., Fisher, A.J., Beal, P.A.

Citation:

Controlling miRNA-like off-target effects of an siRNA with nucleobase modifications.
Org. Biomol. Chem. 15 pp.10029 - 10036 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.216R free:0.255

NDB ID:

5NXT

PDB ID:

5NXT 

Release:

2017-11-29

Title:

Wobble base paired RNA double helix

Classification:

RNA

Authors:

Garg, A., Heinemann, U.

Citation:

A Novel Form of RNA Double Helix Based on G·U and C·A+ Wobble Base Pairing.
RNA pp. - 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.379Å R work:0.129R free:0.151

NDB ID:

5U0Q

PDB ID:

5U0Q 

Release:

2017-11-29

Title:

RNA-DNA heptamer duplex with one 2'-5'-linkage

Classification:

RNA, DNA

Authors:

Luo, Z., Sheng, J., Wang, R.

Citation:

RNA-DNA heptamer duplex with one 2'-5'-linkage
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.43Å R work:0.152R free:0.176

NDB ID:

6AR1

PDB ID:

6AR1 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Nat))

Classification:

RNA binding protein/RNA/DNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell 68 pp.926 - 939.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.01Å R work:0.216R free:0.254

NDB ID:

6AR3

PDB ID:

6AR3 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (RT/Duplex (Se-Met))

Classification:

RNA binding protein/RNA/DNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell 68 pp.926 - 939.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.41Å R work:0.273R free:0.323

NDB ID:

6AR5

PDB ID:

6AR5 

Release:

2017-11-29

Title:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (Duplex Only)

Classification:

DNA/RNA

Authors:

Stamos, J.L., Lentzsch, A.M., Lambowitz, A.M.

Citation:

Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications.
Mol. Cell 68 pp.926 - 939.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.413Å R work:0.185R free:0.212

NDB ID:

5WEA

PDB ID:

5WEA 

Release:

2017-11-22

Title:

Human Argonaute2 Helix-7 Mutant

Classification:

HYDROLASE/RNA

Authors:

Klum, S.M., Chandradoss, S.D., Schirle, N.T., Joo, C., MacRae, I.J.

Citation:

Helix-7 in Argonaute2 shapes the microRNA seed region for rapid target recognition.
EMBO J. 37 pp.75 - 88 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.252R free:0.282

NDB ID:

5Y85

PDB ID:

5Y85 

Release:

2017-11-22

Title:

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Classification:

RNA

Authors:

Zheng, L., Mairhofer, E., Teplova, M., Zhang, Y., Ma, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun 8 pp.1180 - 1180 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.001Å R work:0.217R free:0.237

NDB ID:

5Y87

PDB ID:

5Y87 

Release:

2017-11-22

Title:

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Classification:

RNA

Authors:

Zheng, L., Mairhofer, E., Teplova, M., Zhang, Y., Ma, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun 8 pp.1180 - 1180 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.132Å R work:0.202R free:0.257

NDB ID:

5OMW

PDB ID:

5OMW 

Release:

2017-11-15

Title:

Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation

Classification:

TRANSLATION

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic Origin of Substrate Specificity in Post-Transfer Editing by Leucyl-tRNA Synthetase.
J. Mol. Biol. 430 pp.1 - 16 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.218R free:0.264

NDB ID:

5ON2

PDB ID:

5ON2 

Release:

2017-11-15

Title:

Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation

Classification:

TRANSLATION

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic Origin of Substrate Specificity in Post-Transfer Editing by Leucyl-tRNA Synthetase.
J. Mol. Biol. 430 pp.1 - 16 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.263

NDB ID:

5ON3

PDB ID:

5ON3 

Release:

2017-11-15

Title:

Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation

Classification:

LIGASE

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic Origin of Substrate Specificity in Post-Transfer Editing by Leucyl-tRNA Synthetase.
J. Mol. Biol. 430 pp.1 - 16 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.241R free:0.277

NDB ID:

5ONH

PDB ID:

5ONH 

Release:

2017-11-15

Title:

Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation

Classification:

LIGASE

Authors:

Dulic, M., Cvetesic, N., Zivkovic, I., Palencia, A., Cusack, S., Bertosa, B., Gruic-Sovulj, I.

Citation:

Kinetic Origin of Substrate Specificity in Post-Transfer Editing by Leucyl-tRNA Synthetase.
J. Mol. Biol. 430 pp.1 - 16 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.222R free:0.257

NDB ID:

5XC6

PDB ID:

5XC6 

Release:

2017-11-08

Title:

Dengue Virus 4 NS3 Helicase in complex with SSRNA SLA12

Classification:

HYDROLASE/RNA

Authors:

Swarbrick, C.M.D., Basavannacharya, C., Chan, K.W.K., Chan, S.A., Singh, D., Wei, N., Phoo, W.W., Luo, D., Lescar, J., Vasudevan, S.G.

Citation:

NS3 helicase from dengue virus specifically recognizes viral RNA sequence to ensure optimal replication
Nucleic Acids Res. 45 pp.12904 - 12920 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.201R free:0.256

NDB ID:

5OT2

PDB ID:

5OT2 

Release:

2017-11-01

Title:

RNA polymerase II elongation complex in the presence of 3d-Napht-A

Classification:

TRANSCRIPTION

Authors:

Malvezzi, S., Farnung, L., Aloisi, C.M.N., Angelov, T., Cramer, P., Sturla, S.J.

Citation:

Mechanism of RNA polymerase II stalling by DNA alkylation.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.12172 - 12177 2017

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.178R free:0.221

NDB ID:

5WTI

PDB ID:

5WTI 

Release:

2017-11-01

Title:

Crystal structure of the CRISPR-associated protein in complex with crRNA and DNA

Classification:

Hydrolase/DNA/RNA

Authors:

Wu, D., Guan, X., Zhu, Y., Ren, K., Huang, Z.

Citation:

Structural basis of stringent PAM recognition by CRISPR-C2c1 in complex with sgRNA
Cell Res. 27 pp.705 - 708 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.682Å R work:0.216R free:0.264

NDB ID:

5XJ2

PDB ID:

5XJ2 

Release:

2017-11-01

Title:

Structure of spRlmCD with U747 RNA

Classification:

TRANSFERASE/RNA

Authors:

Jiang, Y., Li, F., Wu, J., Shi, Y., Gong, Q.

Citation:

Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD
PLoS ONE 12 pp.e0185226 - e0185226 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.84Å R work:0.195R free:0.236

NDB ID:

5O58

PDB ID:

5O58 

Release:

2017-10-25

Title:

Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG

Classification:

HYDROLASE

Authors:

Drexler, D.J., Muller, M., Rojas-Cordova, C.A., Bandera, A.M., Witte, G.

Citation:

Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.
Structure 25 pp.1887 - 1897.e4 2017

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.157R free:0.183

NDB ID:

5W3V

PDB ID:

5W3V 

Release:

2017-10-25

Title:

Crystal Structure of macaque APOBEC3H in complex with RNA

Classification:

ANTIVIRAL PROTEIN/RNA

Authors:

Bohn, J.A., Thummar, K., York, A., Raymond, A., Brown, W.C., Bieniasz, P.D., Hatziioannou, T., Smith, J.L.

Citation:

APOBEC3H structure reveals an unusual mechanism of interaction with duplex RNA.
Nat Commun 8 pp.1021 - 1021 2017

Experiment:

X-RAY DIFFRACTION Resolution:2.243Å R work:0.181R free:0.221