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As of 17-Aug-2016 number of released structures: 8433
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3129  Download results as an excel file       Gallery view

NDB ID:

5D8H

PDB ID:

5D8H 

Release:

2016-08-24

Title:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON

Classification:

RIBOSOMAL PROTEIN

Authors:

Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.

Citation:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.208R free:0.245

NDB ID:

5KGV

PDB ID:

5KGV 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural impact of single ribonucleotides in DNA.
Chembiochem pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KI7

PDB ID:

5KI7 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural impact of single ribonucleotides in DNA.
Chembiochem pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KIB

PDB ID:

5KIB 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural impact of single ribonucleotides in DNA.
Chembiochem pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KIE

PDB ID:

5KIE 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural impact of single ribonucleotides in DNA.
Chembiochem pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KIF

PDB ID:

5KIF 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural impact of single ribonucleotides in DNA.
Chembiochem pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KIH

PDB ID:

5KIH 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural impact of single ribonucleotides in DNA.
Chembiochem pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KQE

PDB ID:

5KQE 

Release:

2016-08-24

Title:

Solution structure of P2a-J2a/b-P2b of medaka telomerase RNA

Classification:

RNA

Authors:

Wang, Y., Yesselman, J.D., Zhang, Q., Kang, M., Feigon, J.

Citation:

Structural conservation in the template/pseudoknot domain of vertebrate telomerase RNA from teleost fish to human
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5KX9

PDB ID:

5KX9 

Release:

2016-08-24

Title:

Selective Small Molecule Inhibition of the FMN Riboswitch

Classification:

RNA/inhibitor

Authors:

Howe, J.A., Xiao, L., Fischmann, T.O., Wang, H., Tang, H., Villafania, A., Zhang, R., Barbieri, C.M., Roemer, T.

Citation:

Atomic Resolution Mechanistic Studies of Ribocil: A Highly Selective Unnatural Ligand Mimic of the E. coli FMN Riboswitch.
Rna Biol. pp.0 - 0 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.216R free:0.251

NDB ID:

5KL1

PDB ID:

5KL1 

Release:

2016-08-17

Title:

Crystal structure of the Pumilio-Nos-hunchback RNA complex

Classification:

RNA binding protein/RNA

Authors:

Weidmann, C.A., Qiu, C., Arvola, R.M., Lou, T.F., Killingsworth, J., Campbell, Z.T., Tanaka Hall, T.M., Goldstrohm, A.C.

Citation:

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.701Å R work:0.264R free:0.3

NDB ID:

5KL8

PDB ID:

5KL8 

Release:

2016-08-17

Title:

Crystal structure of the Pumilio-Nos-CyclinB RNA complex

Classification:

RNA-binding protein/RNA

Authors:

Weidmann, C.A., Qiu, C., Arvola, R.M., Lou, T.F., Killingsworth, J., Campbell, Z.T., Tanaka Hall, T.M., Goldstrohm, A.C.

Citation:

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.0Å R work:0.282R free:0.311

NDB ID:

5KLA

PDB ID:

5KLA 

Release:

2016-08-17

Title:

Crystal structure of the drosophila Pumilio RNA-binding domain in complex with hunchback RNA

Classification:

RNA-binding protein/RNA

Authors:

Weidmann, C.A., Qiu, C., Arvola, R.M., Lou, T.F., Killingsworth, J., Campbell, Z.T., Tanaka Hall, T.M., Goldstrohm, A.C.

Citation:

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.
Elife 5 pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.14Å R work:0.16R free:0.173

NDB ID:

2N3O

PDB ID:

2N3O 

Release:

2016-08-10

Title:

Structure of PTB RRM1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Maris, C., Jayne, S.F., Damberger, F.F., Ravindranathan, S., Allain, F.H.-T.

Citation:

C-terminal helix folding upon pyrimidine-rich hairpin binding to PTB RRM1. Implications for PTB function in Encephalomyocarditis virus IRES activity.
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2NBX

PDB ID:

2NBX 

Release:

2016-08-10

Title:

Solution structure of the J-K region of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2NBY

PDB ID:

2NBY 

Release:

2016-08-10

Title:

Solution structure of the J domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2NBZ

PDB ID:

2NBZ 

Release:

2016-08-10

Title:

Solution structure of the K domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2NC0

PDB ID:

2NC0 

Release:

2016-08-10

Title:

Solution structure of the St domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2NC1

PDB ID:

2NC1 

Release:

2016-08-10

Title:

Solution structure of the delta-J-delta-K domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

5D5L

PDB ID:

5D5L 

Release:

2016-08-10

Title:

PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+

Classification:

RNA

Authors:

Belashov, I.A., Liberman, J.A., Salim, M., Wedekind, J.E.

Citation:

Cesium(I) binding to G-U-wobble base pairs in preQ1 riboswitches with implications for crystallographic phasing
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.198R free:0.246

NDB ID:

5KK5

PDB ID:

5KK5 

Release:

2016-08-10

Title:

AsCpf1(E993A)-crRNA-DNA ternary complex

Classification:

Hydrolase/DNA/RNA

Authors:

Gao, P., Yang, H., Rajashankar, K.R., Huang, Z., Patel, D.J.

Citation:

Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition.
Cell Res. 26 pp.901 - 913 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.289Å R work:0.216R free:0.254

NDB ID:

2N6S

PDB ID:

2N6S 

Release:

2016-08-03

Title:

Structure of CssA4 (bottom stem) of CssA thermometer

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

2N6T

PDB ID:

2N6T 

Release:

2016-08-03

Title:

NMR Assignment and NMR Structure of CssA3 (top stem) of CssA thermometer

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

2N6W

PDB ID:

2N6W 

Release:

2016-08-03

Title:

NMR Assignment and structure of CssA Thermometer from Neisseria meningitidis

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

2N6X

PDB ID:

2N6X 

Release:

2016-08-03

Title:

NMR Assignment and structure of CssA5 (middle region) of CssA thermometer from Neisseria meningitidis

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5AXM

PDB ID:

5AXM 

Release:

2016-08-03

Title:

Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)

Classification:

Transferase/RNA

Authors:

Kimura, S., Suzuki, T., Chen, M., Kato, K., Yu, J., Nakamura, A., Tanaka, I., Yao, M.

Citation:

Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv 2 pp.e1501397 - e1501397 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.21Å R work:0.215R free:0.242

NDB ID:

5AXN

PDB ID:

5AXN 

Release:

2016-08-03

Title:

Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP

Classification:

Transferase/RNA

Authors:

Kimura, S., Suzuki, T., Chen, M., Kato, K., Yu, J., Nakamura, A., Tanaka, I., Yao, M.

Citation:

Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv 2 pp.e1501397 - e1501397 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.703Å R work:0.225R free:0.267

NDB ID:

5KVJ

PDB ID:

5KVJ 

Release:

2016-08-03

Title:

Crystal structure of the 16-mer doublestranded RNA. Northeast Structural Genomics Consortium (NESG) target RNA1

Classification:

RNA

Authors:

Vorobiev, S.M., Ma, L.-C., Montelione, G.T.

Citation:

Crystal structure of the 16-mer double stranded RNA.
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.261Å R work:0.193R free:0.233

NDB ID:

5IT8

PDB ID:

5IT8 

Release:

2016-07-27

Title:

High-resolution structure of the Escherichia coli ribosome

Classification:

RIBOSOME

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.189R free:0.219

NDB ID:

5J5B

PDB ID:

5J5B 

Release:

2016-07-27

Title:

Structure of the WT E coli ribosome bound to tetracycline

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.209R free:0.218

NDB ID:

5J7L

PDB ID:

5J7L 

Release:

2016-07-27

Title:

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.172R free:0.193

NDB ID:

5CH0

PDB ID:

5CH0 

Release:

2016-07-20

Title:

Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine

Classification:

DNA

Authors:

Sheng, J.

Citation:

Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.189R free:0.201

NDB ID:

5DEK

PDB ID:

5DEK 

Release:

2016-07-20

Title:

RNA octamer containing dT

Classification:

RNA

Authors:

Kel In, A.V., Zlatev, I., Harp, J., Jayaraman, M., Bisbe, A., O Shea, J., Taneja, N., Manoharan, R.M., Khan, S., Charisse, K., Maier, M.A., Egli, M., Rajeev, K.G., Manoharan, M.

Citation:

Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem. 81 pp.2261 - 2279 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.993Å R work:0.239R free:0.262

NDB ID:

5E6M

PDB ID:

5E6M 

Release:

2016-07-20

Title:

Crystal structure of human wild type GlyRS bound with tRNAGly

Classification:

LIGASE/RNA

Authors:

Qin, X., Deng, X., Chen, L., Xie, W.

Citation:

Crystal Structure of the Wild-Type Human GlyRS Bound with tRNA(Gly) in a Productive Conformation
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.927Å R work:0.193R free:0.243

NDB ID:

5GJB

PDB ID:

5GJB 

Release:

2016-07-20

Title:

Zika virus NS3 helicase in complex with ssRNA

Classification:

HYDROLASE/RNA

Authors:

Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

Citation:

Structural basis of Zika virus helicase in recognizing its substrates
Protein Cell pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.702Å R work:0.153R free:0.195

NDB ID:

5JS1

PDB ID:

5JS1 

Release:

2016-07-20

Title:

Human Argonaute2 Bound to an siRNA

Classification:

HYDROLASE/RNA

Authors:

Schirle, N.T., Kinberger, G.A., Murray, H.F., Lima, W.F., Prakash, T.P., MacRae, I.J.

Citation:

Structural Analysis of Human Argonaute-2 Bound to a Modified siRNA Guide.
J.Am.Chem.Soc. 138 pp.8694 - 8697 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.499Å R work:0.216R free:0.247

NDB ID:

5JS2

PDB ID:

5JS2 

Release:

2016-07-20

Title:

Human Argonaute-2 Bound to a Modified siRNA

Classification:

HYDROLASE/RNA

Authors:

Schirle, N.T., Kinberger, G.A., Murray, H.F., Lima, W.F., Prakash, T.P., MacRae, I.J.

Citation:

Structural Analysis of Human Argonaute-2 Bound to a Modified siRNA Guide.
J.Am.Chem.Soc. 138 pp.8694 - 8697 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.954Å R work:0.222R free:0.261

NDB ID:

5KI6

PDB ID:

5KI6 

Release:

2016-07-20

Title:

Human Argonaute-2 bound to a guide RNA with a nucleobase modification at position 1

Classification:

HYDROLASE/RNA

Authors:

Suter, S.R., Sheu-Gruttadauria, J., Schirle, N.T., Valenzuela, R., Ball-Jones, A.A., Onizuka, K., MacRae, I.J., Beal, P.A.

Citation:

Structure-Guided Control of siRNA Off-Target Effects.
J.Am.Chem.Soc. 138 pp.8667 - 8669 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.153Å R work:0.237R free:0.269

NDB ID:

5JEA

PDB ID:

5JEA 

Release:

2016-07-13

Title:

Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA

Classification:

HYDROLASE/RNA

Authors:

Kowalinski, E., Kogel, A., Ebert, J., Reichelt, P., Stegmann, E., Habermann, B., Conti, E.

Citation:

Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex.
Mol.Cell 63 pp.125 - 134 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.215R free:0.258

NDB ID:

5K7C

PDB ID:

5K7C 

Release:

2016-07-13

Title:

The native structure of native pistol ribozyme

Classification:

RNA/DNA

Authors:

Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R., Patel, D.J.

Citation:

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.73Å R work:0.2R free:0.25

NDB ID:

5K7D

PDB ID:

5K7D 

Release:

2016-07-13

Title:

The structure of native pistol ribozyme, bound to Iridium

Classification:

RNA/DNA

Authors:

Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R., Patel, D.J.

Citation:

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.68Å R work:0.189R free:0.239

NDB ID:

5K7E

PDB ID:

5K7E 

Release:

2016-07-13

Title:

The structure of pistol ribozyme, soaked with Mn2+

Classification:

RNA/DNA

Authors:

Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R., Patel, D.J.

Citation:

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.27Å R work:0.239R free:0.289

NDB ID:

4YY3

PDB ID:

4YY3 

Release:

2016-07-06

Title:

30S ribosomal subunit- HigB complex

Classification:

RIBOSOME

Authors:

Schureck, M.A., Maehigashi, T., Miles, S.J., Marquez, J., Dunham, C.M.

Citation:

mRNA bound to the 30S subunit is a HigB toxin substrate.
Rna 22 pp.1261 - 1270 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.214R free:0.238

NDB ID:

5AWH

PDB ID:

5AWH 

Release:

2016-07-06

Title:

Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex

Classification:

RNA BINDING PROTEIN/DNA/RNA

Authors:

Miyoshi, T., Ito, K., Murakami, R., Uchiumi, T.

Citation:

Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute.
Nat Commun 7 pp.11846 - 11846 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.184R free:0.232

NDB ID:

5DCV

PDB ID:

5DCV 

Release:

2016-07-06

Title:

Crystal structure of PhoRpp38-SL12M complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Oshima, K., Kakiuchi, Y., Tanaka, Y., Ueda, T., Nakashima, T., Kimura, M., Yao, M.

Citation:

Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38
Biochem.Biophys.Res.Commun. 474 pp.541 - 546 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.401Å R work:0.262R free:0.311

NDB ID:

5E02

PDB ID:

5E02 

Release:

2016-07-06

Title:

Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock

Classification:

Hydrolase, RNA BINDING PROTEIN/RNA

Authors:

Conrad, K.S., Hurley, J.M., Widom, J., Ringelberg, C.S., Loros, J.J., Dunlap, J.C., Crane, B.R.

Citation:

Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock.
Embo J. 35 pp.1707 - 1719 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.277R free:0.32

NDB ID:

5J88

PDB ID:

5J88 

Release:

2016-07-06

Title:

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Classification:

ribosome/antibiotic

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.32Å R work:0.175R free:0.218

NDB ID:

5J8A

PDB ID:

5J8A 

Release:

2016-07-06

Title:

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Classification:

ribosome/antibiotic

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.171R free:0.192

NDB ID:

5J91

PDB ID:

5J91 

Release:

2016-07-06

Title:

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Classification:

ribosome/antibiotic

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.96Å R work:0.208R free:0.221

NDB ID:

5JC9

PDB ID:

5JC9 

Release:

2016-07-06

Title:

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Classification:

RIBOSOME

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.172R free:0.2

NDB ID:

5K8H

PDB ID:

5K8H 

Release:

2016-07-06

Title:

The X-ray crystal structure of a parallel poly(rA) double helix generated by rA7 at acidic pH

Classification:

RNA

Authors:

Gleghorn, M.L., Zhao, J., Turner, D.H., Maquat, L.E.

Citation:

Crystal structure of a poly(rA) staggered zipper at acidic pH: evidence that adenine N1 protonation mediates parallel double helix formation.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.069Å R work:0.106R free:0.108