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As of 20-Jun-2018 number of released structures: 9555
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4574  Download results as an excel file       Gallery view

NDB ID:

 5VOE

PDB ID:

5VOE 

Release:

2018-06-20

Title:

DesGla-XaS195A Bound to Aptamer 11F7t

Classification:

HYDROLASE/RNA

Authors:

Gunaratne, R., Kumar, S., Frederiksen, J.W., Stayrook, S., Lohrmann, J.L., Perry, K., Bompiani, K.M., Chabata, C.V., Thalji, N.K., Ho, M.D., Arepally, G., Camire, R.M., Krishnaswamy, S., Sullenger, B.A.

Citation:

Combination of aptamer and drug for reversible anticoagulation in cardiopulmonary bypass.
Nat. Biotechnol. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.212R free:0.248

NDB ID:

 5W4U

PDB ID:

5W4U 

Release:

2018-06-20

Title:

Pol II elongation complex with an N6-methyladenine-containing template

Classification:

DNA BINDING PROTEIN/RNA/DNA

Authors:

Wang, W., Wang, D.

Citation:

Pol II elongation complex with an N6-methyladenine-containing template
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.6Å R work:0.226R free:0.259

NDB ID:

 5W51

PDB ID:

5W51 

Release:

2018-06-20

Title:

Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP

Classification:

DNA BINDING PROTEIN/RNA/DNA

Authors:

Wang, W., Wang, D.

Citation:

Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.404Å R work:0.226R free:0.253

NDB ID:

 6CK4

PDB ID:

6CK4 

Release:

2018-06-20

Title:

G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp

Classification:

RNA

Authors:

Knappenberger, A.J., Reiss, C.W., Strobel, S.A.

Citation:

Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA.
Elife 7 pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.097Å R work:0.248R free:0.304

NDB ID:

 6CK5

PDB ID:

6CK5 

Release:

2018-06-20

Title:

PRPP riboswitch from T. mathranii bound to PRPP

Classification:

RNA

Authors:

Knappenberger, A.J., Reiss, C.W., Strobel, S.A.

Citation:

Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA.
Elife 7 pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.49Å R work:0.214R free:0.252

NDB ID:

 6D3P

PDB ID:

6D3P 

Release:

2018-06-20

Title:

Crystal structure of an exoribonuclease-resistant RNA from Sweet clover necrotic mosaic virus (SCNMV)

Classification:

RNA

Authors:

Steckelberg, A.L., Akiyama, B.M., Costantino, D.A., Sit, T.L., Nix, J.C., Kieft, J.S.

Citation:

A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.241R free:0.258

NDB ID:

 6F4G

PDB ID:

6F4G 

Release:

2018-06-20

Title:

'Crystal structure of the Drosophila melanogaster SNF/U2A'/U2-SL4 complex

Classification:

SPLICING

Authors:

Weber, G., DeKoster, G.T., Holton, N., Hall, K.B., Wahl, M.C.

Citation:

Molecular principles underlying dual RNA specificity in the Drosophila SNF protein.
Nat Commun 9 pp.2220 - 2220 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.166R free:0.217

NDB ID:

 6F4H

PDB ID:

6F4H 

Release:

2018-06-20

Title:

Crystal structure of the Drosophila melanogaster SNF/U1-SL2 complex

Classification:

SPLICING

Authors:

Weber, G., DeKoster, G.T., Holton, N., Hall, K.B., Wahl, M.C.

Citation:

Molecular principles underlying dual RNA specificity in the Drosophila SNF protein.
Nat Commun 9 pp.2220 - 2220 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.169R free:0.211

NDB ID:

 5VOF

PDB ID:

5VOF 

Release:

2018-06-13

Title:

DesGla-XaS195A Bound to Aptamer 11F7t and Rivaroxaban

Classification:

HYDROLASE/HYDROLASE INHIBITOR/RNA

Authors:

Gunaratne, R., Kumar, S., Frederiksen, J.W.,, Stayrook, S., Lohrmann, J.L., Perry, K., Chabata, C.V., Thalji, N.K., Ho, M.D., Arepally, G., Camire, R.M., Krishnaswamy, S.K., Sullenger, B.A.

Citation:

DesGla-XaS195A Bound to Aptamer 11F7t and Rivaroxaban
Nat.Biotechnol. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.22R free:0.253

NDB ID:

 6BY4

PDB ID:

6BY4 

Release:

2018-06-13

Title:

Single-State 14-mer UUCG Tetraloop calculated from Exact NOEs

Classification:

RNA

Authors:

Nichols, P.J., Henen, M.A., Born, A., Strotz, D., Guntert, P., Vogeli, B.

Citation:

High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints
Commun Biol pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6BY5

PDB ID:

6BY5 

Release:

2018-06-13

Title:

Two-State 14-mer UUCG Tetraloop calculated from Exact NOEs (State one: Conformers 1-5, State Two: Conformers 6-10)

Classification:

RNA

Authors:

Nichols, P.J., Henen, M.A., Born, A., Strotz, D., Guntert, P., Vogeli, B.

Citation:

High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints
Commun Biol pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6CB3

PDB ID:

6CB3 

Release:

2018-06-13

Title:

Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium

Classification:

RNA

Authors:

Bachas, S.T., Ferre-D'Amare, A.R.

Citation:

Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators.
Cell Chem Biol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.891Å R work:0.14R free:0.173

NDB ID:

 6CC1

PDB ID:

6CC1 

Release:

2018-06-13

Title:

Crystal structure of ykoY-alx riboswitch chimera bound to cadmium

Classification:

RNA

Authors:

Bachas, S.T., Ferre-D'Amare, A.R.

Citation:

Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators.
Cell Chem Biol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.54Å R work:0.221R free:0.28

NDB ID:

 6CC3

PDB ID:

6CC3 

Release:

2018-06-13

Title:

Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium

Classification:

RNA

Authors:

Bachas, S.T., Ferre-D'Amare, A.R.

Citation:

Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators.
Cell Chem Biol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.698Å R work:0.195R free:0.248

NDB ID:

 6GMY

PDB ID:

6GMY 

Release:

2018-06-13

Title:

Tc-DNA/RNA duplex

Classification:

DNA-RNA HYBRID

Authors:

Istrate, A., Johannsen, S., Istrate, A., Sigel, R.K.O., Leumann, C.

Citation:

NMR solution structure of fully modified tc-DNA/RNA, tc-DNA/DNA and tc-DNA/tc-DNA duplexes
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 6CMN

PDB ID:

6CMN 

Release:

2018-06-06

Title:

Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Belashov, I.A., Crawford, D.W., Cavender, C.E., Dai, P., Beardslee, P.C., Mathews, D.H., Pentelute, B.L., McNaughton, B.R., Wedekind, J.E.

Citation:

Structure of HIV TAR in Complex with a Lab-Evolved RRM Provides Insight into Duplex RNA Recognition and Synthesis of a Constrained Peptide that Impairs Transcription
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.796Å R work:0.189R free:0.221

NDB ID:

 5Z1H

PDB ID:

5Z1H 

Release:

2018-05-30

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin

Classification:

RNA

Authors:

Kanazawa, H., Saavedra, O.M., Maianti, J.P., Young, S.A., Izquierdo, L., Smith, T.K., Hanessian, S., Kondo, J.

Citation:

Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside.
ChemMedChem pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.212R free:0.263

NDB ID:

 5Z1I

PDB ID:

5Z1I 

Release:

2018-05-30

Title:

Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin

Classification:

RNA

Authors:

Kanazawa, H., Saavedra, O.M., Maianti, J.P., Young, S.A., Izquierdo, L., Smith, T.K., Hanessian, S., Kondo, J.

Citation:

Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside.
ChemMedChem pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.903Å R work:0.195R free:0.224

NDB ID:

 6C8D

PDB ID:

6C8D 

Release:

2018-05-30

Title:

RNA-dGMP complex with Mg ion

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.92Å R work:0.219R free:0.281

NDB ID:

 6C8E

PDB ID:

6C8E 

Release:

2018-05-30

Title:

RNA-imidazolium-bridged intermediate complex, 4h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.267R free:0.289

NDB ID:

 6C8I

PDB ID:

6C8I 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 5 min soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.77Å R work:0.23R free:0.282

NDB ID:

 6C8J

PDB ID:

6C8J 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 15 min soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.21R free:0.244

NDB ID:

 6C8K

PDB ID:

6C8K 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 30 min soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.259Å R work:0.223R free:0.302

NDB ID:

 6C8L

PDB ID:

6C8L 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 1h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.169R free:0.252

NDB ID:

 6C8M

PDB ID:

6C8M 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer, 1.5h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.239R free:0.271

NDB ID:

 6C8N

PDB ID:

6C8N 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 2h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.245R free:0.306

NDB ID:

 6C8O

PDB ID:

6C8O 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer, 3h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.85Å R work:0.231R free:0.281

NDB ID:

 6CAB

PDB ID:

6CAB 

Release:

2018-05-30

Title:

RNA-dGMP complex with Sr ion

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.215R free:0.28

NDB ID:

 6BOH

PDB ID:

6BOH 

Release:

2018-05-23

Title:

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Svidritskiy, E., Korostelev, A.A.

Citation:

Conformational Control of Translation Termination on the 70S Ribosome.
Structure 26 pp.821 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å

NDB ID:

 6BOK

PDB ID:

6BOK 

Release:

2018-05-23

Title:

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Classification:

RIBOSOME

Authors:

Svidritskiy, E., Korostelev, A.A.

Citation:

Conformational Control of Translation Termination on the 70S Ribosome.
Structure 26 pp.821 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.55Å

NDB ID:

 6D1V

PDB ID:

6D1V 

Release:

2018-05-23

Title:

Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA

Classification:

isomerase/hydrolase/rna

Authors:

Gao, A., Vasilyev, N., Luciano, D.J., Levenson-Palmer, R., Richards, J., Marsiglia, W.M., Traaseth, N.J., Belasco, J.G., Serganov, A.

Citation:

Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.81Å R work:0.198R free:0.219

NDB ID:

 5NPM

PDB ID:

5NPM 

Release:

2018-05-16

Title:

CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN TTHL1 LACKING 8 N-TERMINAL RESIDUES IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS

Classification:

RNA

Authors:

Gabdulkhakov, A.G., Tishchenko, T.V., Nevskaya, N.A., Nikonov, S.V., Garber, M.B.

Citation:

CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN TTHL1 LACKING 8 N-TERMINAL RESIDUES IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.201R free:0.248

NDB ID:

 5VSU

PDB ID:

5VSU 

Release:

2018-05-09

Title:

Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA

Classification:

SPLICING

Authors:

Montemayor, E.J., Didychuk, A.L., Yake, A.D., Sidhu, G.K., Brow, D.A., Butcher, S.E.

Citation:

Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun 9 pp.1749 - 1749 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.233R free:0.298

NDB ID:

 6ASO

PDB ID:

6ASO 

Release:

2018-05-09

Title:

Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA

Classification:

SPLICING

Authors:

Montemayor, E.J., Didychuk, A.L., Yake, A.D., Sidhu, G.K., Brow, D.A., Butcher, S.E.

Citation:

Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun 9 pp.1749 - 1749 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.71Å R work:0.194R free:0.246

NDB ID:

 6FPQ

PDB ID:

6FPQ 

Release:

2018-05-09

Title:

Structure of S. pombe Mmi1 in complex with 7-mer RNA

Classification:

RNA BINDING PROTEIN

Authors:

Stowell, J.A.W., Wagstaff, J.L., Hill, C.H., Yu, M., McLaughlin, S.H., Freund, S.M.V., Passmore, L.A.

Citation:

A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding.
J. Biol. Chem. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.42Å R work:0.142R free:0.167

NDB ID:

 6FPX

PDB ID:

6FPX 

Release:

2018-05-09

Title:

Structure of S. pombe Mmi1 in complex with 11-mer RNA

Classification:

RNA BINDING PROTEIN

Authors:

Stowell, J.A.W., Wagstaff, J.L., Hill, C.H., Yu, M., McLaughlin, S.H., Freund, S.M.V., Passmore, L.A.

Citation:

A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding.
J. Biol. Chem. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.97Å R work:0.2R free:0.234

NDB ID:

 6FQ3

PDB ID:

6FQ3 

Release:

2018-05-09

Title:

Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA

Classification:

RNA BINDING PROTEIN

Authors:

Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.

Citation:

Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun 9 pp.1549 - 1549 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.901Å R work:0.158R free:0.18

NDB ID:

 6FQL

PDB ID:

6FQL 

Release:

2018-05-09

Title:

Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with mab-10 3'UTR 13mer RNA

Classification:

RNA BINDING PROTEIN

Authors:

Kumari, P., Aeschimann, F., Gaidatzis, D., Keusch, J.J., Ghosh, P., Neagu, A., Pachulska-Wieczorek, K., Bujnicki, J.M., Gut, H., Grosshans, H., Ciosk, R.

Citation:

Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition.
Nat Commun 9 pp.1549 - 1549 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.349Å R work:0.171R free:0.21

NDB ID:

 5NDJ

PDB ID:

5NDJ 

Release:

2018-05-02

Title:

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Classification:

RIBOSOME

Authors:

Prokhorova, I., Altman, R.B., Djumagulov, M., Shrestha, J.P., Urzhumtsev, A., Ferguson, A., Chang, C.T., Yusupov, M., Blanchard, S.C., Yusupova, G.

Citation:

Aminoglycoside interactions and impacts on the eukaryotic ribosome.
Proc. Natl. Acad. Sci. U.S.A. 114 pp.E10899 - E10908 2017

Experiment:

 X-RAY DIFFRACTION Resolution:3.15Å R work:0.202R free:0.246

NDB ID:

 5USB

PDB ID:

5USB 

Release:

2018-04-18

Title:

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGGTTACGGT)

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Lloyd, N.R., Wuttke, D.S.

Citation:

Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure 26 pp.722 - 733.e2 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.615Å R work:0.175R free:0.202

NDB ID:

 5USN

PDB ID:

5USN 

Release:

2018-04-18

Title:

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGrGrUTACGGT)

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Lloyd, N.R., Wuttke, D.S.

Citation:

Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure 26 pp.722 - 733.e2 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.183R free:0.223

NDB ID:

 5USO

PDB ID:

5USO 

Release:

2018-04-18

Title:

Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (GGTTACrGrGrU)

Classification:

DNA BINDING PROTEIN/DNA/RNA

Authors:

Lloyd, N.R., Wuttke, D.S.

Citation:

Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure 26 pp.722 - 733.e2 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.21R free:0.245

NDB ID:

 5XPA

PDB ID:

5XPA 

Release:

2018-04-18

Title:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 9'U10' on the target strand

Classification:

DNA BINDING PROTEIN

Authors:

Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A., Juranek, S., Tuschl, T., Patel, J.D., Wang, Y.

Citation:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.215R free:0.28

NDB ID:

 5XPG

PDB ID:

5XPG 

Release:

2018-04-18

Title:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'U7' on the target strand

Classification:

DNA BINDING PROTEIN

Authors:

Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A., Juranek, S., Tuschl, T., Patel, J.D., Wang, Y.

Citation:

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.202R free:0.246

NDB ID:

 6CAE

PDB ID:

6CAE 

Release:

2018-04-18

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Classification:

RIBOSOME/INHIBITOR

Authors:

Pantel, L., Florin, T., Dobosz-Bartoszek, M., Racine, E., Sarciaux, M., Serri, M., Houard, J., Campagne, J.M., de Figueiredo, R.M., Midrier, C., Gaudriault, S., Givaudan, A., Lanois, A., Forst, S., Aumelas, A., Cotteaux-Lautard, C., Bolla, J.M., Vingsbo Lundberg, C., Huseby, D.L., Hughes, D., Villain-Guillot, P., Mankin, A.S., Polikanov, Y.S., Gualtieri, M.

Citation:

Odilorhabdins, Antibacterial Agents that Cause Miscoding by Binding at a New Ribosomal Site.
Mol. Cell 70 pp.83 - 94.e7 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.211R free:0.249

NDB ID:

 6CBD

PDB ID:

6CBD 

Release:

2018-04-18

Title:

Crystal Structure of Human Argonaute2 Bound to Three Tryptophans

Classification:

RNA BINDING PROTEIN

Authors:

Sheu-Gruttadauria, J., MacRae, I.J.

Citation:

Phase Transitions in the Assembly and Function of Human miRISC.
Cell 173 pp.946 - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.203Å R work:0.175R free:0.215

NDB ID:

 6C6K

PDB ID:

6C6K 

Release:

2018-04-04

Title:

Structural basis for preferential recognition of cap 0 RNA by a human IFIT1-IFIT3 protein complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Johnson, B., VanBlargan, L.A., Xu, W., White, J.P., Shan, C., Shi, P.Y., Zhang, R., Adhikari, J., Gross, M.L., Leung, D.W., Diamond, M.S., Amarasinghe, G.K.

Citation:

Human IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein Stability.
Immunity 48 pp.487 - 499.e5 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.54Å R work:0.168R free:0.236

NDB ID:

 5V8I

PDB ID:

5V8I 

Release:

2018-03-28

Title:

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Classification:

RIBOSOME

Authors:

Murphy, E., Connetti, J.L., Dahlberg, A.E., Gregory, S.T., Jogl, G.

Citation:

Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.25Å R work:0.226R free:0.27

Equivalence Class: 

NR_all_65795.31 

Eq. Class Rep:

4LFB

NDB ID:

 5V8I

PDB ID:

5V8I 

Release:

2018-03-28

Title:

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Classification:

RIBOSOME

Authors:

Murphy, E., Connetti, J.L., Dahlberg, A.E., Gregory, S.T., Jogl, G.

Citation:

Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.25Å R work:0.226R free:0.27

Equivalence Class: 

NR_all_97519.27 

Eq. Class Rep:

4Y4O

NDB ID:

 5V8I

PDB ID:

5V8I 

Release:

2018-03-28

Title:

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Classification:

RIBOSOME

Authors:

Murphy, E., Connetti, J.L., Dahlberg, A.E., Gregory, S.T., Jogl, G.

Citation:

Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.25Å R work:0.226R free:0.27

Equivalence Class: 

NR_all_42622.27 

Eq. Class Rep:

5FDV

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