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As of 16-Apr-2014 number of released structures: 7127
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2737   (Gallery view)

NDB ID:

 NA2905

PDB ID:

4OOG 

Release:

2014-04-16

Title:

Crystal structure of yeast RNase III (Rnt1p) complexed with the product of dsRNA processing

Classification:

HYDROLASE/RNA

Authors:

Liang, Y.H., Lavoie, M., Comeau, M.A., Abou Elela, S., Ji, X.

Citation:

Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection.
Mol.Cell pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.216R free:0.239

NDB ID:

 2MB0

PDB ID:

2MB0 

Release:

2014-04-09

Title:

Solution structure of hnRNP G RRM in complex with the RNA 5'-AUCAAA-3'

Classification:

SPLICING/RNA

Authors:

Allain, F.H.-T., Clery, A., Moursy, A.

Citation:

Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation
Nucleic Acids Res. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_12187.1 

Eq. Class Rep:

2MB0

NDB ID:

 NA2972

PDB ID:

4CSF 

Release:

2014-04-09

Title:

Structural insights into Toscana virus RNA encapsidation

Classification:

VIRAL PROTEIN/RNA

Authors:

Olal, D., Dick, A., Woods, V.L., Liu, T., Li, S., Devignot, S., Weber, F., Saphire, E.O., Daumke, O.

Citation:

Structural Insights Into RNA Encapsidation and Helical Assembly of the Toscana Virus Nucleoprotein.
Nucleic Acids Res. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.598Å R work:0.203R free:0.239

Equivalence Class: 

NR_all_97303.1 

Eq. Class Rep:

4CSF

NDB ID:

 2M5U

PDB ID:

2M5U 

Release:

2014-04-02

Title:

NMR structure of the P4 hairpin of the CPEB3 ribozyme

Classification:

RNA

Authors:

Skilandat, M., Rowinska-Zyrek, M., Sigel, R.K.

Citation:

Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain.
J.Biol.Inorg.Chem. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_53155.1 

Eq. Class Rep:

2M5U

NDB ID:

 NA2858

PDB ID:

4NVU 

Release:

2014-04-02

Title:

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.203R free:0.258

Equivalence Class: 

NR_all_42982.25 

Eq. Class Rep:

1FJG

NDB ID:

 NA2859

PDB ID:

4NVV 

Release:

2014-04-02

Title:

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.203R free:0.258

Equivalence Class: 

NR_all_86444.17 

Eq. Class Rep:

4NVV

NDB ID:

 NA2860

PDB ID:

4NVW 

Release:

2014-04-02

Title:

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.203R free:0.258

Equivalence Class: 

NR_all_42982.25 

Eq. Class Rep:

1FJG

NDB ID:

 NA2861

PDB ID:

4NVX 

Release:

2014-04-02

Title:

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.203R free:0.258

Equivalence Class: 

NR_all_86444.17 

Eq. Class Rep:

4NVV

NDB ID:

 NA2862

PDB ID:

4NVY 

Release:

2014-04-02

Title:

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.259

Equivalence Class: 

NR_all_42982.25 

Eq. Class Rep:

1FJG

NDB ID:

 NA2863

PDB ID:

4NVZ 

Release:

2014-04-02

Title:

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.259

Equivalence Class: 

NR_all_86444.17 

Eq. Class Rep:

4NVV

NDB ID:

 NA2864

PDB ID:

4NW0 

Release:

2014-04-02

Title:

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.259

Equivalence Class: 

NR_all_42982.25 

Eq. Class Rep:

1FJG

NDB ID:

 NA2865

PDB ID:

4NW1 

Release:

2014-04-02

Title:

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Bulkley, D., Brandi, L., Polikanov, Y.S., Fabbretti, A., O'Connor, M., Gualerzi, C.O., Steitz, T.A.

Citation:

The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep 6 pp.357 - 365 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.259

Equivalence Class: 

NR_all_86444.17 

Eq. Class Rep:

4NVV

NDB ID:

 2MKN

PDB ID:

2MKN 

Release:

2014-03-19

Title:

Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and dsRNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Burge, R.G., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

Citation:

Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and Nucleic Acids.
Biochemistry 53 pp.1495 - 1510 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_72173.1 

Eq. Class Rep:

2MKN

NDB ID:

 NA2293

PDB ID:

4JNX 

Release:

2014-03-19

Title:

Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Katorcha, E., Tamjar, J., Popov, A.N., Malinina, L.

Citation:

Procrustean bed of RNA silencing suppression
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.95Å R work:0.196R free:0.234

Equivalence Class: 

NR_all_39574.1 

Eq. Class Rep:

4E48

NDB ID:

 NA2632

PDB ID:

4LVV 

Release:

2014-03-19

Title:

Structure of the THF riboswitch

Classification:

RNA

Authors:

Trausch, J.J., Batey, R.T.

Citation:

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol. 21 pp.205 - 216 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.202R free:0.227

Equivalence Class: 

NR_all_20246.1 

Eq. Class Rep:

4LVZ

NDB ID:

 NA2640

PDB ID:

4LVW 

Release:

2014-03-19

Title:

Structure of the THF riboswitch bound to 7-deazaguanine

Classification:

RNA

Authors:

Trausch, J.J., Batey, R.T.

Citation:

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol. 21 pp.205 - 216 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.768Å R work:0.209R free:0.239

Equivalence Class: 

NR_all_20246.1 

Eq. Class Rep:

4LVZ

NDB ID:

 NA2641

PDB ID:

4LVX 

Release:

2014-03-19

Title:

Structure of the THF riboswitch bound to tetrahydrobiopterin

Classification:

RNA

Authors:

Trausch, J.J., Batey, R.T.

Citation:

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol. 21 pp.205 - 216 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.22R free:0.24

Equivalence Class: 

NR_all_20246.1 

Eq. Class Rep:

4LVZ

NDB ID:

 NA2642

PDB ID:

4LVY 

Release:

2014-03-19

Title:

Structure of the THF riboswitch bound to pemetrexed

Classification:

RNA

Authors:

Trausch, J.J., Batey, R.T.

Citation:

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol. 21 pp.205 - 216 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.21R free:0.242

Equivalence Class: 

NR_all_20246.1 

Eq. Class Rep:

4LVZ

NDB ID:

 NA2643

PDB ID:

4LVZ 

Release:

2014-03-19

Title:

Structure of the THF riboswitch bound to 2,6-diaminopurine

Classification:

RNA

Authors:

Trausch, J.J., Batey, R.T.

Citation:

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol. 21 pp.205 - 216 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.77Å R work:0.219R free:0.259

Equivalence Class: 

NR_all_20246.1 

Eq. Class Rep:

4LVZ

NDB ID:

 NA2644

PDB ID:

4LW0 

Release:

2014-03-19

Title:

Structure of the THF riboswitch bound to adenine

Classification:

RNA

Authors:

Trausch, J.J., Batey, R.T.

Citation:

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol. 21 pp.205 - 216 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.889Å R work:0.205R free:0.228

Equivalence Class: 

NR_all_20246.1 

Eq. Class Rep:

4LVZ

NDB ID:

 NA2291

PDB ID:

4JK0 

Release:

2014-03-12

Title:

Crystal structure of T89Q-mutant of RNA silencing suppressor p19 with 2nt-5'-overhanging double-helical RNA 21mer pUUUG(CUG)5CU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Katorcha, E., Tamjar, J., Popov, A.N., Malinina, L.

Citation:

Procrustean bed of RNA silencing suppression
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.183R free:0.245

Equivalence Class: 

NR_all_44885.1 

Eq. Class Rep:

4JK0

NDB ID:

 NA2942

PDB ID:

4OAU 

Release:

2014-03-12

Title:

Complete human RNase L in complex with biological activators.

Classification:

HYDROLASE/RNA

Authors:

Han, Y., Donovan, J., Rath, S., Whitney, G., Chitrakar, A., Korennykh, A.

Citation:

Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response.
Science 343 pp.1244 - 1248 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.211R free:0.251

Equivalence Class: 

NR_all_30007.1 

Eq. Class Rep:

4OAU

NDB ID:

 NA2946

PDB ID:

4OAV 

Release:

2014-03-12

Title:

Complete human RNase L in complex with 2-5A (5'-ppp heptamer), AMPPCP and RNA substrate.

Classification:

HYDROLASE/RNA

Authors:

Han, Y., Donovan, J., Rath, S., Whitney, G., Chitrakar, A., Korennykh, A.

Citation:

Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response.
Science 343 pp.1244 - 1248 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.197R free:0.228

Equivalence Class: 

NR_all_52816.1 

Eq. Class Rep:

4OAV

NDB ID:

 NA2952

PDB ID:

4CR1 

Release:

2014-03-12

Title:

THERMUS THERMOPHILUS RIBOSOME

Classification:

STRUCTURE

Authors:

Chen, Y., Feng, S., Kumar, V., Ero, R., Gao, Y.G.

Citation:

Structure of EF-G-Ribosome Complex in a Pretranslocation State
Nat.Struct.Mol.Biol. 20 pp.1077 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.95Å R work:0.209R free:0.244

Equivalence Class: 

NR_all_42982.25 

Eq. Class Rep:

1FJG

NDB ID:

 2M4W

PDB ID:

2M4W 

Release:

2014-03-05

Title:

single G-bulge in a conserved regulatory region of the HEV genome

Classification:

RNA

Authors:

Lescrinier, E.

Citation:

Binding of a naphtyridine analogue to the single G-bulge in a conserved regulatory region of the HEV genome
To be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_34054.1 

Eq. Class Rep:

2M4W

NDB ID:

 NA2290

PDB ID:

4JGN 

Release:

2014-03-05

Title:

Crystal structure of RNA silencing suppressor p19 with 1nt-5'-overhanging double-helical RNA 20mer pUUG(CUG)5CU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Katorcha, E., Tamjar, J., Popov, A.N., Malinina, L.

Citation:

Procrustean bed of RNA silencing suppression
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.86Å R work:0.183R free:0.21

Equivalence Class: 

NR_all_44885.1 

Eq. Class Rep:

4JK0

NDB ID:

 NA2481

PDB ID:

4L0A 

Release:

2014-03-05

Title:

X-ray structure of an all LNA quadruplex

Classification:

DNA, RNA

Authors:

Russo Krauss, I., Parkinson, G.N., Merlino, A., Mattia, C.A., Randazzo, A., Novellino, E., Mazzarella, L., Sica, F.

Citation:

A regular thymine tetrad and a peculiar supramolecular assembly in the first crystal structure of an all-LNA G-quadruplex.
Acta Crystallogr.,Sect.D 70 pp.362 - 370 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.159R free:0.18

NDB ID:

 NA2753

PDB ID:

4NGB 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having UU-3' ends (2.25 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.182R free:0.219

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2754

PDB ID:

4NGC 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having UA-3' ends (2.1 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.104Å R work:0.171R free:0.202

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2755

PDB ID:

4NGD 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 12-mer siRNA having 5'-p and UU-3' ends (1.95 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.958Å R work:0.177R free:0.204

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2756

PDB ID:

4NGF 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 17-mer siRNA having 5'-p and UU-3' ends (3.1 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.101Å R work:0.223R free:0.27

Equivalence Class: 

NR_all_85942.1 

Eq. Class Rep:

4NGF

NDB ID:

 NA2757

PDB ID:

4NGG 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 13-mer siRNA having 5'-A and UU-3' ends (2.6 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.186R free:0.239

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2758

PDB ID:

4NH3 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 13-mer siRNA having 5'-pU and UU-3' ends (2.6 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.616Å R work:0.195R free:0.283

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2759

PDB ID:

4NH5 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 14-mer siRNA having 5'-pUU and UU-3' ends (2.55 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.211R free:0.273

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2760

PDB ID:

4NH6 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 15-mer siRNA having 5'-pUUU and UU-3' ends (2.55 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.551Å R work:0.193R free:0.245

Equivalence Class: 

NR_all_10683.1 

Eq. Class Rep:

4NGD

NDB ID:

 NA2761

PDB ID:

4NHA 

Release:

2014-03-05

Title:

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 16-mer siRNA having 5'-p and UU-3' ends (3.4 Angstrom resolution)

Classification:

HYDROLASE/RNA

Authors:

Tian, Y., Simanshu, D.K., Ma, J.B., Park, J.E., Heo, I., Kim, V.N., Patel, D.J.

Citation:

A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell 53 pp.606 - 616 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.401Å R work:0.276R free:0.317

Equivalence Class: 

NR_all_72833.1 

Eq. Class Rep:

4NHA

NDB ID:

 NA2899

PDB ID:

4OL8 

Release:

2014-03-05

Title:

Ty3 reverse transcriptase bound to DNA/RNA

Classification:

TRANSFERASE, HYDROLASE/RNA/DNA

Authors:

Nowak, E., Miller, J.T., Bona, M.K., Studnicka, J., Szczepanowski, R.H., Jurkowski, J., Le Grice, S.F., Nowotny, M.

Citation:

Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry.
Nat.Struct.Mol.Biol. 21 pp.389 - 396 2014

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.226R free:0.295

Equivalence Class: 

NR_all_93015.1 

Eq. Class Rep:

4OL8

NDB ID:

 2M57

PDB ID:

2M57 

Release:

2014-02-26

Title:

NMR solution structure of domain 5 from Azotobacter vinelandii Intron 5 at pH 7.8

Classification:

RNA

Authors:

Pechlaner, M., Donghi, D., Zelenay, V., Sigel, R.K.O.

Citation:

Acid-base equilibria near neutral pH in the catalytic triad and the bulge of domain 5 of a bacterial group II intron
To be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_91783.1 

Eq. Class Rep:

2M57

NDB ID:

 2MFC

PDB ID:

2MFC 

Release:

2014-02-26

Title:

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL1)/RsmE(dimer) 2:1 complex

Classification:

TRANSLATION/RNA

Authors:

Duss, O., Michel, E., Diarra Dit Konte, N., Schubert, M., Allain, F.H.

Citation:

Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.
Nucleic Acids Res. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_19916.1 

Eq. Class Rep:

2MFC

NDB ID:

 2MFE

PDB ID:

2MFE 

Release:

2014-02-26

Title:

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL2)/RsmE(dimer) 2:1 complex

Classification:

TRANSLATION/RNA

Authors:

Duss, O., Michel, E., Diarra Dit Konte, N., Schubert, M., Allain, F.H.

Citation:

Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.
Nucleic Acids Res. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_78512.1 

Eq. Class Rep:

2MFE

NDB ID:

 2MFF

PDB ID:

2MFF 

Release:

2014-02-26

Title:

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL3)/RsmE(dimer) 2:1 complex

Classification:

TRANSLATION/RNA

Authors:

Duss, O., Michel, E., Diarra Dit Konte, N., Schubert, M., Allain, F.H.

Citation:

Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.
Nucleic Acids Res. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_89143.1 

Eq. Class Rep:

2MFF

NDB ID:

 2MFG

PDB ID:

2MFG 

Release:

2014-02-26

Title:

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL4)/RsmE(dimer) 2:1 complex

Classification:

TRANSLATION/RNA

Authors:

Duss, O., Michel, E., Diarra Dit Konte, N., Schubert, M., Allain, F.H.

Citation:

Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.
Nucleic Acids Res. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_67831.1 

Eq. Class Rep:

2MFG

NDB ID:

 2MFH

PDB ID:

2MFH 

Release:

2014-02-26

Title:

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(36-44)/RsmE(dimer) 2:1 complex

Classification:

TRANSLATION/RNA

Authors:

Duss, O., Michel, E., Diarra Dit Konte, N., Schubert, M., Allain, F.H.

Citation:

Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.
Nucleic Acids Res. pp. - 2014

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_80176.1 

Eq. Class Rep:

2MFH

NDB ID:

 NA2910

PDB ID:

4OO8 

Release:

2014-02-26

Title:

Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA

Classification:

Hydrolase/DNA/RNA

Authors:

Nishimasu, H., Ran, F.A., Hsu, P.D., Konermann, S., Shehata, S.I., Dohmae, N., Ishitani, R., Zhang, F., Nureki, O.

Citation:

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
Cell(Cambridge,Mass.) pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.221R free:0.253

Equivalence Class: 

NR_all_56110.1 

Eq. Class Rep:

4OO8

NDB ID:

 NA2243

PDB ID:

4J5V 

Release:

2014-02-12

Title:

Crystal structure of p19 in complex with double-helical RNA 19mer p(CAG)3C(CCG)3

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Tamjar, J., Katorcha, E., Cabo, A., Delgado, S., Popov, A.N., Malinina, L.

Citation:

Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.171R free:0.214

Equivalence Class: 

NR_all_85488.1 

Eq. Class Rep:

4J5V

NDB ID:

 NA2624

PDB ID:

4LQ3 

Release:

2014-02-12

Title:

Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDS

Classification:

VIRAL PROTEIN/REPLICATION INHIBITOR/RNA

Authors:

Tarantino, D., Pezzullo, M., Mastrangelo, E., Croci, R., Rohayem, J., Robel, I., Bolognesi, M., Milani, M.

Citation:

Naphthalene-sulfonate inhibitors of human norovirus RNA-dependent RNA-polymerase.
Antiviral Res. 102 pp.23 - 28 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.219R free:0.285

Equivalence Class: 

NR_all_28444.1 

Eq. Class Rep:

4LQ3

NDB ID:

 NA2736

PDB ID:

4MSB 

Release:

2014-02-12

Title:

RNA 10mer duplex with two 2'-5'-linkages

Classification:

RNA

Authors:

Sheng, J., Li, L., Engelhart, A.E., Gan, J., Wang, J., Szostak, J.W.

Citation:

Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA 111 pp.3050 - 3055 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.55Å R work:0.181R free:0.246

Equivalence Class: 

NR_all_02201.6 

Eq. Class Rep:

4MSR

NDB ID:

 NA2738

PDB ID:

4MS9 

Release:

2014-02-12

Title:

Native RNA-10mer Structure: ccggcgccgg

Classification:

RNA

Authors:

Sheng, J., Li, L., Engelhart, A.E., Gan, J., Wang, J., Szostak, J.W.

Citation:

Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA 111 pp.3050 - 3055 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.32Å R work:0.188R free:0.227

Equivalence Class: 

NR_all_36087.1 

Eq. Class Rep:

4MS9

NDB ID:

 NA2739

PDB ID:

4MSR 

Release:

2014-02-12

Title:

RNA 10mer duplex with six 2'-5'-linkages

Classification:

RNA

Authors:

Sheng, J., Li, L., Engelhart, A.E., Gan, J., Wang, J., Szostak, J.W.

Citation:

Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Proc.Natl.Acad.Sci.USA 111 pp.3050 - 3055 2014

Experiment:

 X-RAY DIFFRACTION Resolution:1.2Å R work:0.175R free:0.217

Equivalence Class: 

NR_all_02201.6 

Eq. Class Rep:

4MSR

NDB ID:

 NA2909

PDB ID:

4C4W 

Release:

2014-02-12

Title:

Structure of a rare, non-standard sequence k-turn bound by L7Ae protein

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Huang, L., Lilley, D.M.J.

Citation:

Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein
Nucleic Acids Res. pp. - 2014

Experiment:

 X-RAY DIFFRACTION Resolution:2.95Å R work:0.166R free:0.21

Equivalence Class: 

NR_all_03295.1 

Eq. Class Rep:

4C4W

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