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As of 15-Mar-2023 number of released structures: 12686
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4685  Download results as an excel file       Gallery view

NDB ID:

7U87

PDB ID:

7U87 

Release:

2023-03-15

Title:

Product of 13mer primer with activated G monomer diastereomer 1

Classification:

RNA

Authors:

Pazienza, L.T., Fang, Z., Szostak, J.W.

Citation:

Understanding the metal ion function in the RNA non-enzymatic extesion with phosphorothioates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.701Å R work:0.187R free:0.239

Equivalence Class: 

NR_all_16232.3 

Eq. Class Rep:

5L00

NDB ID:

7U88

PDB ID:

7U88 

Release:

2023-03-15

Title:

Product of 13mer primer with activated G monomer diastereomer 2

Classification:

RNA

Authors:

Pazienza, L.T., Fang, Z., Szostak, J.W.

Citation:

Understanding the metal ion function in the RNA non-enzymatic extesion with phosphorothioates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.14Å R work:0.213R free:0.291

Equivalence Class: 

NR_all_16232.3 

Eq. Class Rep:

5L00

NDB ID:

7U89

PDB ID:

7U89 

Release:

2023-03-15

Title:

Product of 14mer primer with activated G monomer diastereomer 1

Classification:

RNA

Authors:

Pazienza, L.T., Fang, Z., Szostak, J.W.

Citation:

Understanding the metal ion function in the RNA non-enzymatic extesion with phosphorothioates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.216R free:0.281

Equivalence Class: 

NR_all_16232.3 

Eq. Class Rep:

5L00

NDB ID:

7U8A

PDB ID:

7U8A 

Release:

2023-03-15

Title:

Product of 14mer primer with activated G monomer diastereomer 2

Classification:

RNA

Authors:

Pazienza, L.T., Fang, Z., Szostak, J.W.

Citation:

Understanding the metal ion function in the RNA non-enzymatic extesion with phosphorothioates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.199R free:0.281

Equivalence Class: 

NR_all_16232.3 

Eq. Class Rep:

5L00

NDB ID:

7U8B

PDB ID:

7U8B 

Release:

2023-03-15

Title:

Product of 14mer primer with activated asymmetric GA dimer diastereomer 1

Classification:

RNA

Authors:

Pazienza, L.T., Fang, Z., Szostak, J.W.

Citation:

Understanding the metal ion function in the RNA non-enzymatic extesion with phosphorothioates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.73Å R work:0.194R free:0.247

Equivalence Class: 

NR_all_24517.1 

Eq. Class Rep:

7U8B

NDB ID:

8CLM

PDB ID:

8CLM 

Release:

2023-03-01

Title:

1.80 A crystal structure of RNA/2'-O-methyl-RNA heteroduplex

Classification:

RNA

Authors:

Dolot, R.M., Maciaszek, A., Mikolajczyk, B., Nawrot, B.C.

Citation:

Crystal structure of RNA/2'-O-methyl-RNA heteroduplex
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.187R free:0.256

Equivalence Class: 

NR_all_15214.1 

Eq. Class Rep:

8CLM

NDB ID:

8FB3

PDB ID:

8FB3 

Release:

2023-02-22

Title:

PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform

Classification:

RNA

Authors:

Schroeder, G.M., Akinyemi, O., Malik, J., Focht, C.M., Pritchett, E.M., Baker, C.D., McSally, J.P., Jenkins, J.L., Mathews, D.H., Wedekind, J.E.

Citation:

A riboswitch separated from its ribosome-binding site still regulates translation.
Nucleic Acids Res. pp. - 2023

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.224R free:0.265

Equivalence Class: 

NR_all_07310.1 

Eq. Class Rep:

7REX

NDB ID:

8FCS

PDB ID:

8FCS 

Release:

2023-02-22

Title:

Structure of pre-miR-31 reveals an active role in Dicer processing

Classification:

RNA

Authors:

Ma, S., Kotar, A., Grote, S., Rouskin, S., Keane, S.C.

Citation:

Structure of pre-miR-31 reveals an active role in Dicer processing.
Biorxiv pp. - 2023

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_56594.1 

Eq. Class Rep:

8FCS

NDB ID:

7YGH

PDB ID:

7YGH 

Release:

2023-02-15

Title:

Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)

Classification:

HYDROLASE

Authors:

Du, L., Zhang, D., Luo, Z., Lin, Z.

Citation:

Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res. pp. - 2023

Experiment:

X-RAY DIFFRACTION Resolution:3.11Å R work:0.237R free:0.258

Equivalence Class: 

NR_all_64918.15 

Eq. Class Rep:

7SOS

NDB ID:

7YGL

PDB ID:

7YGL 

Release:

2023-02-15

Title:

Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediate

Classification:

HYDROLASE

Authors:

Du, L., Zhang, D., Luo, Z., Lin, Z.

Citation:

Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res. pp. - 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.257R free:0.278

Equivalence Class: 

NR_all_64918.15 

Eq. Class Rep:

7SOS

NDB ID:

7Q33

PDB ID:

7Q33 

Release:

2023-02-08

Title:

Solution structure of RBM39 RRM2 bound to 5'-AGCUUUG-3

Classification:

RNA BINDING PROTEIN

Authors:

Campagne, S., Allain, F.H.

Citation:

Molecular mechanisms of RBM39 RNA splicing regulation and autoregulation
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_96569.1 

Eq. Class Rep:

7Q33

NDB ID:

7XWZ

PDB ID:

7XWZ 

Release:

2023-02-08

Title:

Crystal structure of SARS-CoV-2 N-NTD and dsRNA complex

Classification:

VIRAL PROTEIN/DNA

Authors:

Luan, X., Li, X., Li, Y., Su, G., Yin, W., Jiang, Y., Xu, N., Wang, F., Cheng, W., Jin, Y., Zhang, L., Xu, H.E., Xue, Y., Zhang, S.

Citation:

Antiviral drug design based on structural insights into the N-terminal domain and C-terminal domain of the SARS-CoV-2 nucleocapsid protein.
Sci Bull (Beijing) 67 pp.2327 - 2335 2022

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.226R free:0.268

Equivalence Class: 

NR_all_35591.1 

Eq. Class Rep:

7XWZ

NDB ID:

8H9D

PDB ID:

8H9D 

Release:

2023-02-08

Title:

Crystal structure of Cas12a protein

Classification:

DNA BINDING PROTEIN

Authors:

Jianwei, L., Jobichen, C., Sivaraman, J.

Citation:

Crystal structure of Cas12a protein
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.232R free:0.252

Equivalence Class: 

NR_all_24009.1 

Eq. Class Rep:

5ID6

NDB ID:

7YSE

PDB ID:

7YSE 

Release:

2023-02-01

Title:

Crystal structure of E. coli heterotetrameric GlyRS in complex with tRNA

Classification:

TRANSFERASE/RNA

Authors:

Han, L., Luo, Z., Ju, Y., Chen, B., Zou, T., Wang, J., Xu, J., Gu, Q., Yang, X.L., Schimmel, P., Zhou, H.

Citation:

The binding mode of orphan glycyl-tRNA synthetase with tRNA supports the synthetase classification and reveals large domain movements.
Sci Adv 9 pp.eadf1027 - eadf1027 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.907Å R work:0.229R free:0.259

Equivalence Class: 

NR_all_05887.1 

Eq. Class Rep:

7YSE

NDB ID:

8DH0

PDB ID:

8DH0 

Release:

2023-02-01

Title:

T7 RNA polymerase elongation complex with unnatural base dDs

Classification:

Transferase/DNA/RNA

Authors:

Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.

Citation:

Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun 14 pp.195 - 195 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.22R free:0.261

Equivalence Class: 

NR_all_98371.1 

Eq. Class Rep:

8DH1

NDB ID:

8DH1

PDB ID:

8DH1 

Release:

2023-02-01

Title:

T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair

Classification:

Transferase/DNA/RNA

Authors:

Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.

Citation:

Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun 14 pp.195 - 195 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.229R free:0.271

Equivalence Class: 

NR_all_98371.1 

Eq. Class Rep:

8DH1

NDB ID:

8DH2

PDB ID:

8DH2 

Release:

2023-02-01

Title:

T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch

Classification:

Transferase/DNA/RNA

Authors:

Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.

Citation:

Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun 14 pp.195 - 195 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.259R free:0.307

Equivalence Class: 

NR_all_98371.1 

Eq. Class Rep:

8DH1

NDB ID:

8DH3

PDB ID:

8DH3 

Release:

2023-02-01

Title:

T7 RNA polymerase elongation complex with unnatural base dPa

Classification:

Transferase/DNA/RNA

Authors:

Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.

Citation:

Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun 14 pp.195 - 195 2023

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.247R free:0.275

Equivalence Class: 

NR_all_98371.1 

Eq. Class Rep:

8DH1

NDB ID:

8DH4

PDB ID:

8DH4 

Release:

2023-02-01

Title:

T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair

Classification:

Transferase/DNA/RNA

Authors:

Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.

Citation:

Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun 14 pp.195 - 195 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.232R free:0.274

Equivalence Class: 

NR_all_98371.1 

Eq. Class Rep:

8DH1

NDB ID:

8DH5

PDB ID:

8DH5 

Release:

2023-02-01

Title:

T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch

Classification:

Transferase/DNA/RNA

Authors:

Oh, J., Kimoto, M., Xu, H., Chong, J., Hirao, I., Wang, D.

Citation:

Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun 14 pp.195 - 195 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.233R free:0.267

Equivalence Class: 

NR_all_98371.1 

Eq. Class Rep:

8DH1

NDB ID:

8E85

PDB ID:

8E85 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rG-ended primer-dGMPNPP ternary mismatch complex with Mn2+

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:1.72Å R work:0.203R free:0.233

NDB ID:

8E86

PDB ID:

8E86 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rC-ended primer-dGMPNPP ternary mismatch complex with Mn2+

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:1.78Å R work:0.194R free:0.204

NDB ID:

8E87

PDB ID:

8E87 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rA-ended primer-dGMPNPP ternary mismatch complex with Mg2+

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.19Å R work:0.199R free:0.248

NDB ID:

8E88

PDB ID:

8E88 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer-dGMPNPP ternary mismatch complex with Mg2+

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.194R free:0.223

NDB ID:

8E89

PDB ID:

8E89 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer-binary complex

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.2R free:0.261

NDB ID:

8E8B

PDB ID:

8E8B 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.194R free:0.243

NDB ID:

8E8C

PDB ID:

8E8C 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 30s

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.191R free:0.231

NDB ID:

8E8D

PDB ID:

8E8D 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 60s

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.09Å R work:0.199R free:0.234

NDB ID:

8E8E

PDB ID:

8E8E 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 90s

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.209R free:0.243

NDB ID:

8E8F

PDB ID:

8E8F 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 120s

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.14Å R work:0.2R free:0.273

NDB ID:

8E8G

PDB ID:

8E8G 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 180s

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.13Å R work:0.201R free:0.241

NDB ID:

8E8H

PDB ID:

8E8H 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 300s

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.13Å R work:0.203R free:0.245

NDB ID:

8E8J

PDB ID:

8E8J 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rG-ended primer-dGMPNPP ternary mismatch complex with Mg2+

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.192R free:0.215

NDB ID:

8E8K

PDB ID:

8E8K 

Release:

2023-02-01

Title:

Human DNA polymerase eta-DNA-rC-ended primer-dGMPNPP ternary mismatch complex with Mg2+

Classification:

TRANSFERASE/DNA

Authors:

Chang, C., Lee Luo, C., Eleraky, S., Lin, A., Zhou, G., Gao, Y.

Citation:

Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase eta and reduces DNA synthesis fidelity.
J.Biol.Chem. 299 pp.102938 - 102938 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.181R free:0.237

NDB ID:

7QSH

PDB ID:

7QSH 

Release:

2023-01-25

Title:

23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648

Classification:

RNA

Authors:

Mair, S., Erharter, K., Renard, E., Brillet, K., Brunner, M., Lusser, A., Kreutz, C., Ennifar, E., Micura, R.

Citation:

Synthesis and properties of xanthosine-modified RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:0.86Å R work:0.146R free:0.166

Equivalence Class: 

NR_all_94729.10 

Eq. Class Rep:

4NLF

NDB ID:

7QTN

PDB ID:

7QTN 

Release:

2023-01-25

Title:

Duplex RNA containing Xanthosine-Cytosine base pairs

Classification:

RNA

Authors:

Mair, S., Erharter, K., Renard, E., Brillet, K., Brunner, M., Lusser, A., Kreutz, C., Ennifar, E., Micura, R.

Citation:

Synthesis and properties of xanthosine-modified RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.2Å R work:0.182R free:0.208

Equivalence Class: 

NR_all_33731.1 

Eq. Class Rep:

7QTN

NDB ID:

7QUA

PDB ID:

7QUA 

Release:

2023-01-25

Title:

Duplex RNA containing Xanthosine-Cytosine base pairs

Classification:

RNA

Authors:

Mair, S., Erharter, K., Renard, E., Brillet, K., Brunner, M., Lusser, A., Kreutz, C., Ennifar, E., Micura, R.

Citation:

Synthesis and properties of xanthosine-modified RNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.0Å R work:0.137R free:0.157

Equivalence Class: 

NR_all_65991.1 

Eq. Class Rep:

7QUA

NDB ID:

7WNU

PDB ID:

7WNU 

Release:

2023-01-25

Title:

Mycobacterium tuberculosis Rnase J complex with 7nt RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Li, J., Hu, J., Bao, L., Zhan, B.

Citation:

Structural ans functional study of RNase J from Mycobacterium tuberculosis
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.185R free:0.24

Equivalence Class: 

NR_all_05647.1 

Eq. Class Rep:

7WNU

NDB ID:

8H0S

PDB ID:

8H0S 

Release:

2023-01-25

Title:

Crystal structure of MnmM from B. subtilis complexed with Gln-TTG anti-codon stem loop and SAM (2.90 A)

Classification:

TRANSFERASE/RNA

Authors:

Kim, J., Lee, J., Cho, G.

Citation:

Crystal structure of MnmM from B. subtilis complexed with Gln-TTG anti-codon stem loop and SAM (2.90 A)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.24R free:0.285

Equivalence Class: 

NR_all_95596.1 

Eq. Class Rep:

8H1B

NDB ID:

8H1B

PDB ID:

8H1B 

Release:

2023-01-25

Title:

Crystal structure of MnmM from S. aureus complexed with SAM and tRNA anti-codon stem loop (ASL) (1.55 A)

Classification:

TRANSFERASE/RNA

Authors:

Kim, J., Cho, G., Lee, J.

Citation:

Crystal structure of MnmM from S. aureus complexed with SAM and tRNA anti-codon stem loop (ASL) (1.55 A)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.55Å R work:0.174R free:0.204

Equivalence Class: 

NR_all_95596.1 

Eq. Class Rep:

8H1B

NDB ID:

7WI9

PDB ID:

7WI9 

Release:

2023-01-18

Title:

The THF-II riboswitch bound to THF and soaking with SeUrea

Classification:

RNA

Authors:

Xu, L., Xiao, Y., Zhang, J., Fang, X.

Citation:

Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res. 51 pp.952 - 965 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.211R free:0.23

Equivalence Class: 

NR_all_52535.1 

Eq. Class Rep:

7WIE

NDB ID:

7WIA

PDB ID:

7WIA 

Release:

2023-01-18

Title:

The apo-form of THF-II C22G riboswitch

Classification:

RNA

Authors:

Xu, L., Xiao, Y., Zhang, J., Fang, X.

Citation:

Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res. 51 pp.952 - 965 2023

Experiment:

X-RAY DIFFRACTION Resolution:3.22Å R work:0.169R free:0.207

Equivalence Class: 

NR_all_52535.1 

Eq. Class Rep:

7WIE

NDB ID:

7WIB

PDB ID:

7WIB 

Release:

2023-01-18

Title:

The THF-II riboswitch bound to THF

Classification:

RNA

Authors:

Xu, L., Xiao, Y., Zhang, J., Fang, X.

Citation:

Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res. 51 pp.952 - 965 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.83Å R work:0.201R free:0.23

Equivalence Class: 

NR_all_52535.1 

Eq. Class Rep:

7WIE

NDB ID:

7WIE

PDB ID:

7WIE 

Release:

2023-01-18

Title:

The THF-II riboswitch bound to 7DG

Classification:

RNA

Authors:

Xu, L., Xiao, Y., Zhang, J., Fang, X.

Citation:

Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res. 51 pp.952 - 965 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.173R free:0.204

Equivalence Class: 

NR_all_52535.1 

Eq. Class Rep:

7WIE

NDB ID:

7WIF

PDB ID:

7WIF 

Release:

2023-01-18

Title:

The THF-II riboswitch bound to H4B

Classification:

RNA

Authors:

Xu, L., Xiao, Y., Zhang, J., Fang, X.

Citation:

Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res. 51 pp.952 - 965 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.86Å R work:0.191R free:0.213

Equivalence Class: 

NR_all_52535.1 

Eq. Class Rep:

7WIE

NDB ID:

7WII

PDB ID:

7WII 

Release:

2023-01-18

Title:

The THF-II riboswitch bound to NPR

Classification:

RNA

Authors:

Xu, L., Xiao, Y., Zhang, J., Fang, X.

Citation:

Structural insights into translation regulation by the THF-II riboswitch.
Nucleic Acids Res. 51 pp.952 - 965 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.202R free:0.237

Equivalence Class: 

NR_all_52535.1 

Eq. Class Rep:

7WIE

NDB ID:

8GXB

PDB ID:

8GXB 

Release:

2023-01-18

Title:

Crystal structure of NAD+ -II riboswitch in complex with NAD+

Classification:

PROTEIN/RNA

Authors:

Xu, X., Egger, M., Li, C., Chen, H., Micura, R., Ren, A.

Citation:

Structure-based investigations of the NAD+-II riboswitch.
Nucleic Acids Res. 51 pp.54 - 67 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.15Å R work:0.219R free:0.268

Equivalence Class: 

NR_all_22486.1 

Eq. Class Rep:

8GXB

NDB ID:

8GXC

PDB ID:

8GXC 

Release:

2023-01-18

Title:

Crystal structure of NAD+ -II riboswitch in complex with NMN

Classification:

PROTEIN/RNA

Authors:

Xu, X., Egger, M., Li, C., Chen, H., Micura, R., Ren, A.

Citation:

Structure-based investigations of the NAD+-II riboswitch.
Nucleic Acids Res. 51 pp.54 - 67 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.224R free:0.268

Equivalence Class: 

NR_all_22486.1 

Eq. Class Rep:

8GXB

NDB ID:

7TUV

PDB ID:

7TUV 

Release:

2023-01-11

Title:

Crystal structure of the exoribonucleolytic module of T. brucei RRP44

Classification:

HYDROLASE/RNA

Authors:

Cesaro, G., da Soler, H.T., Guerra-Slompo, E.P., Haouz, A., Legrand, P., Zanchin, N.I.T., Guimaraes, B.G.

Citation:

Trypanosoma brucei RRP44: a versatile enzyme for processing structured and non-structured RNA substrates.
Nucleic Acids Res. 51 pp.380 - 395 2023

Experiment:

X-RAY DIFFRACTION Resolution:2.225Å R work:0.194R free:0.264

Equivalence Class: 

NR_all_12473.1 

Eq. Class Rep:

7TUV

NDB ID:

7UU3

PDB ID:

7UU3 

Release:

2023-01-11

Title:

Crystal structure of APOBEC3G complex with 3'overhangs RNA-Complex

Classification:

HYDROLASE/RNA

Authors:

Yang, H., Kim, K., Li, S., Pacheco, J., Chen, X.S.

Citation:

Structural basis of sequence-specific RNA recognition by the antiviral factor APOBEC3G.
Nat Commun 13 pp.7498 - 7498 2022

Experiment:

X-RAY DIFFRACTION Resolution:3.099Å R work:0.169R free:0.209

Equivalence Class: 

NR_all_20765.1 

Eq. Class Rep:

7UU3