A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Nov-2020 number of released structures: 11059
Search for released structures

RNA Search Options:

Polymer

All
RNA Only
Protein RNA Complexes
Drug RNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

RNA Type

All
tRNA
tRNA fragment
Ribosome
Ribozyme
Hairpin Ribozyme
Hammerhead Ribozyme
Group I intron Ribozyme
Group II intron Ribozyme
Rnase P Ribozyme
Polymerase Ribozyme
Ligase Ribozyme
Leadzyme
Ribozyme fragment
Virus
Viral fragment
Riboswitch
Riboswitch fragment
Aptamer
Telomerase RNA
Small nucleotide fragments
Double Helices
Triple Helices
Quadruple Helices

Protein Function

All
Enzymes
Structural
Regulatory

Experimental Method

All
XRAY
NMR

Representative RNA 3D Structure Sets

All RNA Structures
Representative sets of RNA-containing 3D structures
Resolution cutoff:

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5485  Download results as an excel file       Gallery view

NDB ID:

 6HPJ

PDB ID:

6HPJ 

Release:

2020-11-18

Title:

Structure of human SRSF1 RRM1 bound to AACAAA RNA

Classification:

RNA BINDING PROTEIN

Authors:

Allain, F.T.H., Clery, A.

Citation:

Structure of RRM bound to RNA
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_58013.1 

Eq. Class Rep:

6HPJ

NDB ID:

 6VEM

PDB ID:

6VEM 

Release:

2020-11-18

Title:

Structure of RNA octamer

Classification:

RNA

Authors:

Mikami, A., Erande, N., Matsuda, S., Kel'in, A., Woods, L.B., Chickering, T., Pallan, P.S., Schlegel, M.K., Zlatev, I., Egli, M., Manoharan, M.

Citation:

Synthesis, chirality-dependent conformational and biological properties of siRNAs containing 5'-(R)- and 5'-(S)-C-methyl-guanosine.
Nucleic Acids Res. 48 pp.10101 - 10124 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.56Å R work:0.177R free:0.243

Equivalence Class: 

NR_all_99259.1 

Eq. Class Rep:

6VEM

NDB ID:

 6WBR

PDB ID:

6WBR 

Release:

2020-11-18

Title:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM

Classification:

RNA BINDING PROTEIN/DNA/RNA

Authors:

Das, A., Li, H.

Citation:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.91Å R work:0.224R free:0.266

Equivalence Class: 

NR_all_12576.1 

Eq. Class Rep:

6WBR

NDB ID:

 6WC0

PDB ID:

6WC0 

Release:

2020-11-18

Title:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM

Classification:

RNA BINDING PROTEIN/RNA/DNA

Authors:

Das, A., Li, H.

Citation:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.61Å R work:0.237R free:0.303

Equivalence Class: 

NR_all_12576.1 

Eq. Class Rep:

6WBR

NDB ID:

 6VWT

PDB ID:

6VWT 

Release:

2020-11-11

Title:

Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Classification:

RNA

Authors:

Ramakrishnan, S., Stagno, J.R., Conrad, C., Ding, J., Yu, P., Bhandari, Y., Cantero-Camacho, A., Lee, Y.-T., Pauly, G., Yefanov, O., Wiedorn, M., Knoska, J., Oberthuer, D., White, T.A., Barty, A., Mariani, V., Heinz, W.F., Magidson, V., Lockett, S., Hunter, M.S., Boutet, S., Zatsepin, N., Li, C., Grant, T.D., Spence, J.C.H., Chapman, H.N., Wang, Y.-X.

Citation:

Synchronized behaviors of riboswitch molecules in crystals
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.03Å R work:0.225R free:0.25

Equivalence Class: 

NR_all_94683.1 

Eq. Class Rep:

4XNR

NDB ID:

 6VWV

PDB ID:

6VWV 

Release:

2020-11-11

Title:

Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Classification:

RNA

Authors:

Ramakrishnan, S., Stagno, J.R., Conrad, C., Ding, J., Yu, P., Bhandari, Y., Cantero-Camacho, A., Lee, Y.-T., Pauly, G., Yefanov, O., Wiedorn, M., Knoska, J., Oberthuer, D., White, T.A., Barty, A., Mariani, V., Heinz, W.F., Magidson, V., Lockett, S., Hunter, M.S., Boutet, S., Zatsepin, N., Li, C., Grant, T.D., Spence, J.C.H., Chapman, H.N., Wang, Y.-X.

Citation:

Synchronized behaviors of riboswitch molecules in crystals
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.246R free:0.279

Equivalence Class: 

NR_all_94683.1 

Eq. Class Rep:

4XNR

NDB ID:

 7ACS

PDB ID:

7ACS 

Release:

2020-11-04

Title:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer dsRNA

Classification:

VIRAL PROTEIN

Authors:

Veverka, V.

Citation:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer ssRNA
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_88121.1 

Eq. Class Rep:

7ACS

NDB ID:

 7CHD

PDB ID:

7CHD 

Release:

2020-11-04

Title:

AtaT complexed with acetyl-methionyl-tRNAfMet

Classification:

TRANSFERASE

Authors:

Yashiro, Y., Sakaguchi, Y., Suzuki, T., Tomita, K.

Citation:

Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli.
Nat Commun 11 pp.5438 - 5438 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.804Å R work:0.286R free:0.34

Equivalence Class: 

NR_all_35542.77 

Eq. Class Rep:

5L4O

NDB ID:

 6LTP

PDB ID:

6LTP 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 binary complex

Classification:

HYDROLASE/RNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.4Å R work:0.207R free:0.23

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

 6LTR

PDB ID:

6LTR 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with single Mg2+ bound in catalytic pocket

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.51Å R work:0.197R free:0.225

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

 6LTU

PDB ID:

6LTU 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with double Mg2+ bound in catalytic pocket

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.57Å R work:0.202R free:0.228

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

 6LU0

PDB ID:

6LU0 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with 12 nt spacer

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.22Å R work:0.206R free:0.23

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

 6SNJ

PDB ID:

6SNJ 

Release:

2020-10-28

Title:

Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III

Classification:

SPLICING

Authors:

Jutzi, D., Campagne, S., Schmidt, R., Reber, S., Mechtersheimer, J., Gypas, F., Schweingruber, C., Colombo, M., von Schroetter, C., Loughlin, F.E., Devoy, A., Hedlund, E., Zavolan, M., Allain, F.H., Ruepp, M.D.

Citation:

Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced Amyotrophic Lateral Sclerosis
Nat Commun pp. - 2020

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_11925.1 

Eq. Class Rep:

6SNJ

NDB ID:

 6ZOT

PDB ID:

6ZOT 

Release:

2020-10-28

Title:

Crystal structure of YTHDF3 YTH domain in complex with m6A RNA

Classification:

RNA BINDING PROTEIN

Authors:

Li, Y., Bedi, R.K., Moroz-Omori, E.V., Caflisch, A.

Citation:

Structural and Dynamic Insights into Redundant Function of YTHDF Proteins.
J.Chem.Inf.Model. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.215R free:0.275

Equivalence Class: 

NR_all_80216.1 

Eq. Class Rep:

6ZOT

NDB ID:

 7ACT

PDB ID:

7ACT 

Release:

2020-10-28

Title:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNA

Classification:

VIRAL PROTEIN

Authors:

Veverka, V.

Citation:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNA
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_47525.1 

Eq. Class Rep:

7ACT

NDB ID:

 6UP0

PDB ID:

6UP0 

Release:

2020-10-21

Title:

Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin

Classification:

RNA

Authors:

Trachman, R.J., Ferre-D'Amare, A.R.

Citation:

RNA aptamer FRET pair
To be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.173R free:0.214

Equivalence Class: 

NR_all_08239.1 

Eq. Class Rep:

6E8S

NDB ID:

 6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

 6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

 6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

 6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_52787.1 

Eq. Class Rep:

6NTA

NDB ID:

 6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

 6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

 6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

 6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_52787.1 

Eq. Class Rep:

6NTA

NDB ID:

 6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

 6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

 6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

 6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_56101.1 

Eq. Class Rep:

6SZS

NDB ID:

 6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

 6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

 6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

 6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_75816.1 

Eq. Class Rep:

5VPP

NDB ID:

 6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

 6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

 6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

 6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_56101.1 

Eq. Class Rep:

6SZS

NDB ID:

 6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

 6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

 6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

 6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_95053.1 

Eq. Class Rep:

6OSI

NDB ID:

 6XH0

PDB ID:

6XH0 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.9

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.228R free:0.288

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

 6XH1

PDB ID:

6XH1 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.7 mutant

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.601Å R work:0.215R free:0.254

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

 6XH2

PDB ID:

6XH2 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM 6.6

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.71Å R work:0.191R free:0.209

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

 6XH3

PDB ID:

6XH3 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.3

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.353Å R work:0.212R free:0.252

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

 6YRB

PDB ID:

6YRB 

Release:

2020-10-14

Title:

Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 7.5

Classification:

VIRAL PROTEIN

Authors:

Serris, A., Stass, R., Bignon, E.A., Muena, N.A., Manuguerra, J.C., Jangra, R.K., Li, S., Chandran, K., Tischler, N.D., Huiskonen, J.T., Rey, F.A., Guardado-Calvo, P.

Citation:

The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell 183 pp.442 - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.351Å R work:0.225R free:0.265

Equivalence Class: 

NR_all_65417.1 

Eq. Class Rep:

6YRQ

NDB ID:

 6YRQ

PDB ID:

6YRQ 

Release:

2020-10-14

Title:

Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 4.6

Classification:

VIRAL PROTEIN

Authors:

Serris, A., Stass, R., Bignon, E.A., Muena, N.A., Manuguerra, J.C., Jangra, R.K., Li, S., Chandran, K., Tischler, N.D., Huiskonen, J.T., Rey, F.A., Guardado-Calvo, P.

Citation:

The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell 183 pp.442 - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.902Å R work:0.187R free:0.23

Equivalence Class: 

NR_all_65417.1 

Eq. Class Rep:

6YRQ

NDB ID:

 7K16

PDB ID:

7K16 

Release:

2020-10-14

Title:

Tamana Bat Virus xrRNA1

Classification:

RNA

Authors:

Jones, R.A., Steckelberg, A.L., Vicens, Q., Szucs, M.J., Akiyama, B.M., Kieft, J.S.

Citation:

Different tertiary interactions create the same important 3-D features in a distinct flavivirus xrRNA.
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.186R free:0.246

Equivalence Class: 

NR_all_48255.1 

Eq. Class Rep:

7K16

NDB ID:

 6SX0

PDB ID:

6SX0 

Release:

2020-10-07

Title:

Specific dsRNA recognition by wild type H7N1 NS1 RNA-binding domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.75Å R work:0.171R free:0.202

Equivalence Class: 

NR_all_48564.1 

Eq. Class Rep:

6SX2

NDB ID:

 6SX2

PDB ID:

6SX2 

Release:

2020-10-07

Title:

dsRNA recognition by R38AK41A mutant of H7N1 NS1 RNA Binding Domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.167R free:0.191

Equivalence Class: 

NR_all_48564.1 

Eq. Class Rep:

6SX2

NDB ID:

 6XLV

PDB ID:

6XLV 

Release:

2020-10-07

Title:

Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site

Classification:

RNA BINDING PROTEIN/SPLICING

Authors:

Maji, D., Jenkins, J.L., Kielkopf, C.L.

Citation:

Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.4Å R work:0.141R free:0.168

Equivalence Class: 

NR_all_94195.1 

Eq. Class Rep:

6XLW

ndbadmin@ndbserver.rutgers.edu ©1995-2020 The Nucleic Acid Database Project | Rutgers, The State University of New Jersey