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As of 5-Aug-2020 number of released structures: 10886
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5351  Download results as an excel file       Gallery view

NDB ID:

 6PZQ

PDB ID:

6PZQ 

Release:

2020-08-05

Title:

Structure of the human respiratory syncytial virus M2-1 protein in complex with a short positive-sense gene-end RNA

Classification:

METAL BINDING PROTEIN/RNA

Authors:

Gao, Y., Cao, D., Pawnikar, S., John, K.P., Ahn, H.M., Hill, S., Ha, J.M., Parikh, P., Ogilvie, C., Swain, A., Yang, A., Bell, A., Salazar, A., Miao, Y., Liang, B.

Citation:

Structure of the Human Respiratory Syncytial Virus M2-1 Protein in Complex with a Short Positive-Sense Gene-End RNA.
Structure pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.703Å R work:0.224R free:0.287

NDB ID:

 6XQD

PDB ID:

6XQD 

Release:

2020-08-05

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Classification:

RIBOSOME

Authors:

Batool, Z., Lomakin, I.B., Bunick, C.G., Polikanov, Y.S.

Citation:

Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.224R free:0.275

NDB ID:

 6XQE

PDB ID:

6XQE 

Release:

2020-08-05

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Classification:

RIBOSOME

Authors:

Batool, Z., Lomakin, I.B., Bunick, C.G., Polikanov, Y.S.

Citation:

Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome
Proc.Natl.Acad.Sci.USA pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.246R free:0.31

NDB ID:

 6YWO

PDB ID:

6YWO 

Release:

2020-08-05

Title:

CutA in complex with A3 RNA

Classification:

RNA BINDING PROTEIN

Authors:

Malik, D., Kobylecki, K., Krawczyk, P., Poznanski, J., Jakielaszek, A., Napiorkowska, A., Dziembowski, A., Tomecki, R., Nowotny, M.

Citation:

Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.175R free:0.212

NDB ID:

 6Z6B

PDB ID:

6Z6B 

Release:

2020-07-29

Title:

Structure of full-length La Crosse virus L protein (polymerase)

Classification:

VIRAL PROTEIN

Authors:

Arragain, B., Effantin, G., Gerlach, P., Reguera, J., Schoehn, G., Cusack, S., Malet, H.

Citation:

Pre-initiation and elongation structures of full-length La Crosse virus polymerase reveal functionally important conformational changes.
Nat Commun 11 pp.3590 - 3590 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.961Å R work:0.263R free:0.298

NDB ID:

 6NOA

PDB ID:

6NOA 

Release:

2020-07-22

Title:

Solution Structure of the RNA element that recruits eIF3 to the 5'-UTR of c-Jun and regulates specialized translation initiation (apical loop)

Classification:

RNA

Authors:

Walker, M., Shortridge, M., Albin, D., Cominsky, L., Varani, G.

Citation:

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_40944.1 

Eq. Class Rep:

6NOA

NDB ID:

 6SJD

PDB ID:

6SJD 

Release:

2020-07-22

Title:

ZC3H12B-ribonuclease domain bound to RNA

Classification:

RNA BINDING PROTEIN

Authors:

Jolma, A., Zhang, J., Mondragon, E., Morgunova, E., Kivioja, T., Laverty, K.U., Yin, Y., Zhu, F., Bourenkov, G., Morris, Q., Hughes, T.R., Maher 3rd, L.J., Taipale, J.

Citation:

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences.
Genome Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.29Å R work:0.234R free:0.279

Equivalence Class: 

NR_all_06055.1 

Eq. Class Rep:

6SJD

NDB ID:

 6UBU

PDB ID:

6UBU 

Release:

2020-07-22

Title:

1.60 A resolution structure of the guanine riboswitch bound to guanine

Classification:

RNA

Authors:

Matyjasik, M.M., Hall, S.D., Batey, R.T.

Citation:

High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.2R free:0.219

Equivalence Class: 

NR_all_89429.4 

Eq. Class Rep:

4FEN

NDB ID:

 6UC7

PDB ID:

6UC7 

Release:

2020-07-22

Title:

Structure of guanine riboswitch bound to N2-acetyl guanine

Classification:

RNA

Authors:

Matyjasik, M.M., Hall, S.D., Batey, R.T.

Citation:

High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.798Å R free:0.209

Equivalence Class: 

NR_all_89429.4 

Eq. Class Rep:

4FEN

NDB ID:

 6UC8

PDB ID:

6UC8 

Release:

2020-07-22

Title:

Guanine riboswitch bound to 8-aminoguanine

Classification:

RNA

Authors:

Matyjasik, M.M., Hall, S.D., Batey, R.T.

Citation:

High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.898Å R work:0.187R free:0.224

Equivalence Class: 

NR_all_89429.4 

Eq. Class Rep:

4FEN

NDB ID:

 6UC9

PDB ID:

6UC9 

Release:

2020-07-22

Title:

Guanine riboswitch bound to O6-cyclohexylmethyl guanine

Classification:

RNA

Authors:

Matyjasik, M.M., Hall, S.D., Batey, R.T.

Citation:

High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch.
Molecules 25 pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.941Å R work:0.186R free:0.211

Equivalence Class: 

NR_all_89429.4 

Eq. Class Rep:

4FEN

NDB ID:

 6YL5

PDB ID:

6YL5 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with SAH

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.172R free:0.2

Equivalence Class: 

NR_all_34764.1 

Eq. Class Rep:

6YL5

NDB ID:

 6YLB

PDB ID:

6YLB 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with SAM

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.12Å R work:0.224R free:0.262

Equivalence Class: 

NR_all_82632.1 

Eq. Class Rep:

6YML

NDB ID:

 6YMI

PDB ID:

6YMI 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with AMP

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. 48 pp.7545 - 7556 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.213R free:0.241

Equivalence Class: 

NR_all_82632.1 

Eq. Class Rep:

6YML

NDB ID:

 6YMJ

PDB ID:

6YMJ 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with adenosine

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. 48 pp.7545 - 7556 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.04Å R work:0.197R free:0.232

Equivalence Class: 

NR_all_82632.1 

Eq. Class Rep:

6YML

NDB ID:

 6YMK

PDB ID:

6YMK 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with AMP

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. 48 pp.7545 - 7556 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.03Å R work:0.225R free:0.263

Equivalence Class: 

NR_all_82632.1 

Eq. Class Rep:

6YML

NDB ID:

 6YML

PDB ID:

6YML 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with decarboxylated SAH

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. 48 pp.7545 - 7556 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.17Å R work:0.198R free:0.233

Equivalence Class: 

NR_all_82632.1 

Eq. Class Rep:

6YML

NDB ID:

 6YMM

PDB ID:

6YMM 

Release:

2020-07-22

Title:

Crystal structure of the SAM-SAH riboswitch with SAM from space group P312

Classification:

RNA

Authors:

Huang, L., Liao, T.W., Wang, J., Ha, T., Lilley, D.M.J.

Citation:

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.
Nucleic Acids Res. 48 pp.7545 - 7556 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.192R free:0.221

Equivalence Class: 

NR_all_82632.1 

Eq. Class Rep:

6YML

NDB ID:

 6PK9

PDB ID:

6PK9 

Release:

2020-07-01

Title:

Solution Structure of lncRNA (LINK-A) 20-nt Hexaloop Hairpin

Classification:

REPLICATION

Authors:

Amado, A.Y., Walker, M., Varani, G.

Citation:

Structure of the lncRNA LINK-A Hexaloop Hairpin in PI(3,4,5)P3 Interaction
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_91640.1 

Eq. Class Rep:

6PK9

NDB ID:

 6VFF

PDB ID:

6VFF 

Release:

2020-07-01

Title:

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Classification:

HYDROLASE/RNA

Authors:

Thuy-Boun, A.S., Thomas, J.M., Grajo, H.L., Palumbo, C.M., Park, S., Nguyen, L.T., Fisher, A.J., Beal, P.A.

Citation:

Asymmetric dimerization of adenosine deaminase acting on RNA facilitates substrate recognition.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.196R free:0.248

Equivalence Class: 

NR_all_33521.1 

Eq. Class Rep:

6VFF

NDB ID:

 6X5N

PDB ID:

6X5N 

Release:

2020-07-01

Title:

Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail

Classification:

Immune System/RNA

Authors:

Swain, M., Li, M., Ageeli, A., Kasprzak, W., Miller, J.T., Sztuba-Solinska, J., Kenderdine, T., Fraboni, A., Schneekloth, J., Piccirrili, J., Murelli, R.P., Fabris, D., Wlodawer, A., Shapiro, B., Baird, N., Le Grice, S.F.J.

Citation:

Targeting the Nuclear Expression Element (ENE) Triple Helix of Kaposi Sarcoma Herpesvirus Polyadenylated Nuclear RNA, PAN.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.3Å R work:0.18R free:0.266

Equivalence Class: 

NR_all_35127.1 

Eq. Class Rep:

6X5M

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_35542.70 

Eq. Class Rep:

5L4O

NDB ID:

 6OF6

PDB ID:

6OF6 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.195R free:0.232

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_35542.70 

Eq. Class Rep:

5L4O

NDB ID:

 6OJ2

PDB ID:

6OJ2 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.269

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_35542.70 

Eq. Class Rep:

5L4O

NDB ID:

 6OPE

PDB ID:

6OPE 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.225R free:0.266

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_65795.53 

Eq. Class Rep:

4LFB

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_97519.48 

Eq. Class Rep:

4Y4O

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_42622.48 

Eq. Class Rep:

5FDV

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_35542.70 

Eq. Class Rep:

5L4O

NDB ID:

 6ORD

PDB ID:

6ORD 

Release:

2020-06-24

Title:

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Classification:

RIBOSOME

Authors:

Nguyen, H.A., Sunita, S., Dunham, C.M.

Citation:

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.
Proc.Natl.Acad.Sci.USA 117 pp.16333 - 16338 2020

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_20585.1 

Eq. Class Rep:

6ORD

NDB ID:

 6VUH

PDB ID:

6VUH 

Release:

2020-06-24

Title:

APO PreQ1 riboswitch aptamer grown in Mn2+

Classification:

RNA

Authors:

Schroeder, G.M., Dutta, D., Cavender, C.E., Jenkins, J.L., Pritchett, E.M., Baker, C.D., Ashton, J.M., Mathews, D.H., Wedekind, J.E.

Citation:

Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.999Å R work:0.189R free:0.225

Equivalence Class: 

NR_all_80276.2 

Eq. Class Rep:

6E1S

NDB ID:

 6VUI

PDB ID:

6VUI 

Release:

2020-06-24

Title:

Metabolite-bound PreQ1 riboswitch with Mn2+

Classification:

RNA

Authors:

Schroeder, G.M., Dutta, D., Cavender, C.E., Jenkins, J.L., Pritchett, E.M., Baker, C.D., Ashton, J.M., Mathews, D.H., Wedekind, J.E.

Citation:

Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.
Nucleic Acids Res. pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.681Å R work:0.175R free:0.201

Equivalence Class: 

NR_all_80276.2 

Eq. Class Rep:

6E1S

NDB ID:

 6X5M

PDB ID:

6X5M 

Release:

2020-06-24

Title:

Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail

Classification:

Immune System/RNA

Authors:

Swain, M., Li, M., Ageeli, A., Kasprzak, W., Miller, J.T., Sztuba-Solinska, J., Kenderdine, T., Fraboni, A., Schneekloth, J., Piccirrili, J., Murelli, R.P., Fabris, D., Wlodawer, A., Shapiro, B., Baird, N., Le Grice, S.F.J.

Citation:

Targeting the Nuclear Expression Element (ENE) Triple Helix of Kaposi Sarcoma Herpesvirus Polyadenylated Nuclear RNA, PAN.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.207R free:0.278

Equivalence Class: 

NR_all_35127.1 

Eq. Class Rep:

6X5M

NDB ID:

 6L5N

PDB ID:

6L5N 

Release:

2020-06-17

Title:

Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, Z., Li, Z., Hu, X., Xie, F., Kuang, S., Zhan, B., Gao, W., Chen, X., Gao, S., Li, Y., Wang, Y., Qian, F., Ding, C., Gan, J., Ji, C., Xu, X., Zhou, Z., Huang, J., He, H.H., Li, J.

Citation:

Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation.
Adv Sci pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.242Å R work:0.175R free:0.232

Equivalence Class: 

NR_all_51514.1 

Eq. Class Rep:

6L5N

NDB ID:

 6L5N

PDB ID:

6L5N 

Release:

2020-06-17

Title:

Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, Z., Li, Z., Hu, X., Xie, F., Kuang, S., Zhan, B., Gao, W., Chen, X., Gao, S., Li, Y., Wang, Y., Qian, F., Ding, C., Gan, J., Ji, C., Xu, X., Zhou, Z., Huang, J., He, H.H., Li, J.

Citation:

Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation.
Adv Sci pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.242Å R work:0.175R free:0.232

Equivalence Class: 

NR_all_92635.2 

Eq. Class Rep:

6L5N

NDB ID:

 6PPN

PDB ID:

6PPN 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm2-8 with unprocessed U6 snRNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.91Å

Equivalence Class: 

NR_all_74924.11 

Eq. Class Rep:

3PEY

NDB ID:

 6PPP

PDB ID:

6PPP 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm2-8 with processed U6 snRNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.33Å

Equivalence Class: 

NR_all_24721.1 

Eq. Class Rep:

6PPP

NDB ID:

 6PPQ

PDB ID:

6PPQ 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' adenosine

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:1.81Å

Equivalence Class: 

NR_all_18600.1 

Eq. Class Rep:

6PPQ

NDB ID:

 6PPV

PDB ID:

6PPV 

Release:

2020-06-17

Title:

Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' guanosine

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Montemayor, E.J., Virta, J.M., Hayes, S.M., Nomura, Y., Brow, D.A., Butcher, S.E.

Citation:

Molecular Basis for the Distinct Cellular Functions of the Lsm1-7 and Lsm2-8 Complexes
Rna pp. - 2020

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.208R free:0.244

Equivalence Class: 

NR_all_81682.1 

Eq. Class Rep:

6PPV

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