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As of 16-Jan-2019 number of released structures: 9970
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4877  Download results as an excel file       Gallery view

NDB ID:

 5ZC9

PDB ID:

5ZC9 

Release:

2019-01-16

Title:

Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex

Classification:

TRANSLATION/RNA

Authors:

Iwasaki, S., Iwasaki, W., Takahashi, M., Sakamoto, A., Watanabe, C., Shichino, Y., Floor, S.N., Fujiwara, K., Mito, M., Dodo, K., Sodeoka, M., Imataka, H., Honma, T., Fukuzawa, K., Ito, T., Ingolia, N.T.

Citation:

The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA.
Mol. Cell pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.192R free:0.23

NDB ID:

 6BJG

PDB ID:

6BJG 

Release:

2019-01-16

Title:

CIRV p19 mutant T111H in complex with siRNA

Classification:

RNA BINDING PROTEIN

Authors:

Foss, D.V., Schirle, N.T., MacRae, I.J., Pezacki, J.P.

Citation:

Structural examination of p19 mutants with high affinity for human miRNA-122
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.29Å R work:0.212R free:0.257

NDB ID:

 6BJH

PDB ID:

6BJH 

Release:

2019-01-16

Title:

CIRV p19 mutant T111S in complex with siRNA

Classification:

RNA BINDING PROTEIN

Authors:

Foss, D.V., Schirle, N.T., MacRae, I.J., Pezacki, J.P.

Citation:

Structural examination of p19 mutants with high affinity for human miRNA-122.
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.58Å R work:0.224R free:0.277

NDB ID:

 6BJV

PDB ID:

6BJV 

Release:

2019-01-16

Title:

CIRV p19 protein in complex with siRNA

Classification:

RNA BINDING PROTEIN

Authors:

Foss, D.V., Schirle, N.T., MacRae, I.J., Pezacki, J.P.

Citation:

Structural examination of p19 mutants with high affinity for human miRNA-122
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.198Å R work:0.259R free:0.297

NDB ID:

 6C27

PDB ID:

6C27 

Release:

2019-01-09

Title:

SAM-III riboswitch ON-state

Classification:

RNA

Authors:

Price, I.R., Grigg, J.C., Martell, D.J., Ding, F., Peng, C., Ke, A.

Citation:

Evidence for two-tiered conformation selection in the SAM-III riboswitch
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.601Å R work:0.21R free:0.243

NDB ID:

 6HAG

PDB ID:

6HAG 

Release:

2019-01-09

Title:

The structure of the SAM/SAH-binding riboswitch.

Classification:

RNA

Authors:

Weickhmann, A.K., Keller, H., Wurm, J.P., Strebitzer, E., Juen, M.A., Kremser, J., Weinberg, Z., Kreutz, C., Duchardt-Ferner, E., Wohnert, J.

Citation:

The structure of the SAM/SAH-binding riboswitch.
Nucleic Acids Res. pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6MJ0

PDB ID:

6MJ0 

Release:

2019-01-09

Title:

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

Classification:

RNA

Authors:

Hartwick, E.W., Costantino, D.A., MacFadden, A., Nix, J.C., Tian, S., Das, R., Kieft, J.S.

Citation:

Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels.
Nat Commun 9 pp.5074 - 5074 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.226R free:0.266

NDB ID:

 5OC6

PDB ID:

5OC6 

Release:

2018-12-26

Title:

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA

Classification:

RNA BINDING PROTEIN

Authors:

Bou-Nader, C., Barraud, P., Pecqueur, L., Perez, J., Velours, C., Shepard, W., Fontecave, M., Tisne, C., Hamdane, D.

Citation:

Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
Nucleic Acids Res. pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.225R free:0.241

NDB ID:

 6DCB

PDB ID:

6DCB 

Release:

2018-12-19

Title:

Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA

Classification:

Transferase/RNA

Authors:

Yang, Y., Eichhorn, C.D., Wang, Y., Cascio, D., Feigon, J.

Citation:

Structural basis of 7SK RNA 5'-gamma-phosphate methylation and retention by MePCE.
Nat. Chem. Biol. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.998Å R work:0.159R free:0.178

NDB ID:

 6DCC

PDB ID:

6DCC 

Release:

2018-12-19

Title:

Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA

Classification:

Transferase/RNA

Authors:

Yang, Y., Eichhorn, C.D., Wang, Y., Cascio, D., Feigon, J.

Citation:

Structural basis of 7SK RNA 5'-gamma-phosphate methylation and retention by MePCE.
Nat. Chem. Biol. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.174R free:0.198

NDB ID:

 5YYN

PDB ID:

5YYN 

Release:

2018-12-12

Title:

Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg)

Classification:

LIGASE/RNA

Authors:

Zhou, M., Ye, S., Stephen, P., Zhang, R.G., Wang, E.D., Giege, R., Lin, S.X.

Citation:

Crystal Structures Of E.Coli Arginyl-Trna Synthetase (Argrs) In Complex With Substrates
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.219R free:0.268

NDB ID:

 6CYT

PDB ID:

6CYT 

Release:

2018-12-12

Title:

HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb

Classification:

TRANSCRIPTION/RNA

Authors:

Schulze-Gahmen, U., Hurley, J.H.

Citation:

Structural mechanism for HIV-1 TAR loop recognition by Tat and the super elongation complex.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.12973 - 12978 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.247R free:0.282

NDB ID:

 6D2U

PDB ID:

6D2U 

Release:

2018-12-12

Title:

Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA

Classification:

Peptide/RNA

Authors:

Shortridge, M.D., Wille, P.T., Jones, A.N., Davidson, A., Bogdanovic, J., Arts, E., Karn, J., Robinson, J.A., Varani, G.

Citation:

An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb.
Nucleic Acids Res. pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6E4P

PDB ID:

6E4P 

Release:

2018-12-12

Title:

Structure of the T. brucei RRM domain in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Travis, B., Shaw, P.L.R., Liu, B., Ravindra, K., Iliff, H., Al-Hashimi, H.M., Schumacher, M.A.

Citation:

The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.949Å R work:0.18R free:0.228

NDB ID:

 6IFN

PDB ID:

6IFN 

Release:

2018-12-12

Title:

Crystal structure of Type III-A CRISPR Csm complex

Classification:

RNA BINDING PROTEIN

Authors:

You, L., Ma, J., Wang, J., Artamonova, D., Wang, M., Liu, L., Xiang, H., Severinov, K., Zhang, X., Wang, Y.

Citation:

Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference
Cell pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.201R free:0.244

NDB ID:

 6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

NDB ID:

 6N9F

PDB ID:

6N9F 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.279

NDB ID:

 5YTS

PDB ID:

5YTS 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCUUCU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CUUC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.77Å R work:0.187R free:0.226

NDB ID:

 5YTT

PDB ID:

5YTT 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAUGU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.6Å R work:0.182R free:0.217

NDB ID:

 5YTV

PDB ID:

5YTV 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAUCU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CAUC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.196R free:0.227

NDB ID:

 5YTX

PDB ID:

5YTX 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAACU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Huang, Y., Yang, X.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CAAC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.551Å R work:0.2R free:0.24

NDB ID:

 6G7Z

PDB ID:

6G7Z 

Release:

2018-12-05

Title:

Lariat-capping ribozyme with a shortened DP2 stem loop

Classification:

RNA

Authors:

Masquida, B., Meyer, M., Olieric, V.

Citation:

Lariat-capping ribozyme with a shortened DP2 stem loop
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.33595Å R work:0.234R free:0.304

NDB ID:

 6I0T

PDB ID:

6I0T 

Release:

2018-12-05

Title:

Crystal structure of DmTailor in complex with GpU

Classification:

TRANSFERASE

Authors:

Kroupova, A., Ivascu, A., Reimao-Pinto, M.M., Ameres, S.L., Jinek, M.

Citation:

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.204R free:0.233

NDB ID:

 6I0U

PDB ID:

6I0U 

Release:

2018-12-05

Title:

Crystal structure of DmTailor in complex with U6 RNA

Classification:

TRANSFERASE

Authors:

Kroupova, A., Ivascu, A., Reimao-Pinto, M.M., Ameres, S.L., Jinek, M.

Citation:

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.001Å R work:0.205R free:0.24

NDB ID:

 6I0V

PDB ID:

6I0V 

Release:

2018-12-05

Title:

Crystal structure of DmTailor in complex with CACAGU RNA

Classification:

TRANSFERASE

Authors:

Kroupova, A., Ivascu, A., Reimao-Pinto, M.M., Ameres, S.L., Jinek, M.

Citation:

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.851Å R work:0.194R free:0.225

NDB ID:

 6I7V

PDB ID:

6I7V 

Release:

2018-12-05

Title:

Ribosomal protein paralogs bL31 and bL36

Classification:

RIBOSOME

Authors:

Lilleorg, S., Reier, K., Pulk, A., Liiv, A., Tammsalu, T., Peil, L., Cate, J.D., Remme, J.

Citation:

Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase.
Biochimie 156 pp.169 - 180 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.186R free:0.254

NDB ID:

 6IS0

PDB ID:

6IS0 

Release:

2018-12-05

Title:

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH and m7G-capped RNA

Classification:

TRANSFERASE/RNA

Authors:

Akichika, S., Hirano, S., Shichino, Y., Suzuki, T., Nishimasu, H., Ishitani, R., Sugita, A., Hirose, Y., Iwasaki, S., Nureki, O., Suzuki, T.

Citation:

Cap-specific terminalN6-methylation of RNA by an RNA polymerase II-associated methyltransferase.
Science pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.177R free:0.214

NDB ID:

 6CHR

PDB ID:

6CHR 

Release:

2018-11-21

Title:

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Classification:

RNA

Authors:

Chan, R.T., Peters, J.K., Robart, A.R., Wiryaman, T., Rajashankar, K.R., Toor, N.

Citation:

Structural basis for the second step of group II intron splicing.
Nat Commun 9 pp.4676 - 4676 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.7Å R work:0.217R free:0.252

Equivalence Class: 

NR_all_18903.1 

Eq. Class Rep:

6CHR

NDB ID:

 6CIH

PDB ID:

6CIH 

Release:

2018-11-21

Title:

Crystal structure of a group II intron lariat in the post-catalytic state

Classification:

RNA

Authors:

Chan, R.T., Peters, J.K., Robart, A.R., Wiryaman, T., Rajashankar, K.R., Toor, N.

Citation:

Structural basis for the second step of group II intron splicing.
Nat Commun 9 pp.4676 - 4676 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.676Å R work:0.208R free:0.255

Equivalence Class: 

NR_all_18903.1 

Eq. Class Rep:

6CHR

NDB ID:

 6HAU

PDB ID:

6HAU 

Release:

2018-11-21

Title:

KSHV PAN RNA Mta-response element fragment complexed with the globular domain of herpesvirus saimiri ORF57

Classification:

RNA BINDING PROTEIN

Authors:

Tunnicliffe, R.B., Levy, C., Ruiz Nivia, H.D., Sandri-Goldin, R.M., Golovanov, A.P.

Citation:

Structural identification of conserved RNA binding sites in herpesvirus ORF57 homologs: implications for PAN RNA recognition.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.86Å R work:0.158R free:0.196

Equivalence Class: 

NR_all_05648.1 

Eq. Class Rep:

6HAU

NDB ID:

 6HTU

PDB ID:

6HTU 

Release:

2018-11-21

Title:

Structure of hStau1 dsRBD3-4 in complex with ARF1 RNA

Classification:

RNA BINDING PROTEIN

Authors:

Lazzaretti, D., Bandholz-Cajamarca, L., Emmerich, C., Schaaf, K., Basquin, C., Irion, U., Bono, F.

Citation:

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.
Life Sci Alliance 1 pp.e201800187 - e201800187 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.888Å R work:0.217R free:0.239

Equivalence Class: 

NR_all_37848.1 

Eq. Class Rep:

6HTU

NDB ID:

 6HU6

PDB ID:

6HU6 

Release:

2018-11-21

Title:

Structure of ARF1 RNA

Classification:

RNA

Authors:

Lazzaretti, D., Bandholz-Cajamarca, L., Emmerich, C., Schaaf, K., Basquin, C., Irion, U., Bono, F.

Citation:

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.
Life Sci Alliance 1 pp.e201800187 - e201800187 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.904Å R work:0.226R free:0.248

Equivalence Class: 

NR_all_37848.1 

Eq. Class Rep:

6HTU

NDB ID:

 6HU6

PDB ID:

6HU6 

Release:

2018-11-21

Title:

Structure of ARF1 RNA

Classification:

RNA

Authors:

Lazzaretti, D., Bandholz-Cajamarca, L., Emmerich, C., Schaaf, K., Basquin, C., Irion, U., Bono, F.

Citation:

The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.
Life Sci Alliance 1 pp.e201800187 - e201800187 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.904Å R work:0.226R free:0.248

Equivalence Class: 

NR_all_07634.1 

Eq. Class Rep:

6HU6

NDB ID:

 6BUW

PDB ID:

6BUW 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Miles, S.J., Fredrick, K., Dunham, C.M.

Citation:

to be published
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.206R free:0.25

Equivalence Class: 

NR_all_65795.40 

Eq. Class Rep:

4LFB

NDB ID:

 6BUW

PDB ID:

6BUW 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Miles, S.J., Fredrick, K., Dunham, C.M.

Citation:

to be published
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.206R free:0.25

Equivalence Class: 

NR_all_97519.35 

Eq. Class Rep:

4Y4O

NDB ID:

 6BUW

PDB ID:

6BUW 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Miles, S.J., Fredrick, K., Dunham, C.M.

Citation:

to be published
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.206R free:0.25

Equivalence Class: 

NR_all_42622.35 

Eq. Class Rep:

5FDV

NDB ID:

 6BUW

PDB ID:

6BUW 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Miles, S.J., Fredrick, K., Dunham, C.M.

Citation:

to be published
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.206R free:0.25

Equivalence Class: 

NR_all_35542.53 

Eq. Class Rep:

5L4O

NDB ID:

 6BZ6

PDB ID:

6BZ6 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.25

Equivalence Class: 

NR_all_65795.40 

Eq. Class Rep:

4LFB

NDB ID:

 6BZ6

PDB ID:

6BZ6 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.25

Equivalence Class: 

NR_all_97519.35 

Eq. Class Rep:

4Y4O

NDB ID:

 6BZ6

PDB ID:

6BZ6 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.25

Equivalence Class: 

NR_all_42622.35 

Eq. Class Rep:

5FDV

NDB ID:

 6BZ6

PDB ID:

6BZ6 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.25

Equivalence Class: 

NR_all_35542.53 

Eq. Class Rep:

5L4O

NDB ID:

 6BZ7

PDB ID:

6BZ7 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.68Å R work:0.227R free:0.274

Equivalence Class: 

NR_all_65795.40 

Eq. Class Rep:

4LFB

NDB ID:

 6BZ7

PDB ID:

6BZ7 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.68Å R work:0.227R free:0.274

Equivalence Class: 

NR_all_97519.35 

Eq. Class Rep:

4Y4O

NDB ID:

 6BZ7

PDB ID:

6BZ7 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.68Å R work:0.227R free:0.274

Equivalence Class: 

NR_all_42622.35 

Eq. Class Rep:

5FDV

NDB ID:

 6BZ7

PDB ID:

6BZ7 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.68Å R work:0.227R free:0.274

Equivalence Class: 

NR_all_35542.53 

Eq. Class Rep:

5L4O

NDB ID:

 6BZ8

PDB ID:

6BZ8 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.74Å R work:0.204R free:0.224

Equivalence Class: 

NR_all_65795.40 

Eq. Class Rep:

4LFB

NDB ID:

 6BZ8

PDB ID:

6BZ8 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.74Å R work:0.204R free:0.224

Equivalence Class: 

NR_all_97519.35 

Eq. Class Rep:

4Y4O

NDB ID:

 6BZ8

PDB ID:

6BZ8 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.74Å R work:0.204R free:0.224

Equivalence Class: 

NR_all_42622.35 

Eq. Class Rep:

5FDV

NDB ID:

 6BZ8

PDB ID:

6BZ8 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.74Å R work:0.204R free:0.224

Equivalence Class: 

NR_all_35542.53 

Eq. Class Rep:

5L4O

NDB ID:

 6DB8

PDB ID:

6DB8 

Release:

2018-11-14

Title:

Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer

Classification:

RNA/IMMUNE SYSTEM

Authors:

Shelke, S.A., Shao, Y., Laski, A., Koirala, D., Weissman, B.P., Fuller, J.R., Tan, X., Constantin, T.P., Waggoner, A.S., Bruchez, M.P., Armitage, B.A., Piccirilli, J.A.

Citation:

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Nat Commun 9 pp.4542 - 4542 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.86541Å R work:0.219R free:0.233

Equivalence Class: 

NR_all_59317.1 

Eq. Class Rep:

6DB9

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