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As of 14-Nov-2018 number of released structures: 9899
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4831  Download results as an excel file       Gallery view

NDB ID:

 6BUW

PDB ID:

6BUW 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Miles, S.J., Fredrick, K., Dunham, C.M.

Citation:

to be published
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.206R free:0.25

NDB ID:

 6BZ6

PDB ID:

6BZ6 

Release:

2018-11-14

Title:

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.18Å R work:0.231R free:0.25

NDB ID:

 6BZ7

PDB ID:

6BZ7 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.68Å R work:0.227R free:0.274

NDB ID:

 6BZ8

PDB ID:

6BZ8 

Release:

2018-11-14

Title:

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Maehigashi, T., Fredrick, K., Dunham, C.M.

Citation:

Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding
Nucleic Acids Res. pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.74Å R work:0.204R free:0.224

NDB ID:

 6DB8

PDB ID:

6DB8 

Release:

2018-11-14

Title:

Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer

Classification:

RNA/IMMUNE SYSTEM

Authors:

Shelke, S.A., Shao, Y., Laski, A., Koirala, D., Weissman, B.P., Fuller, J.R., Tan, X., Constantin, T.P., Waggoner, A.S., Bruchez, M.P., Armitage, B.A., Piccirilli, J.A.

Citation:

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Nat Commun 9 pp.4542 - 4542 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.86541Å R work:0.219R free:0.233

NDB ID:

 6DB9

PDB ID:

6DB9 

Release:

2018-11-14

Title:

Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer

Classification:

RNA/Immune System

Authors:

Shelke, S.A., Shao, Y., Laski, A., Koirala, D., Weissman, B.P., Fuller, J.R., Tan, X., Constantin, T.P., Waggoner, A.S., Bruchez, M.P., Armitage, B.A., Piccirilli, J.A.

Citation:

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Nat Commun 9 pp.4542 - 4542 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.025Å R work:0.23R free:0.256

NDB ID:

 6DLQ

PDB ID:

6DLQ 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, manganese chloride soaked structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.225R free:0.254

NDB ID:

 6DLR

PDB ID:

6DLR 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.656Å R work:0.197R free:0.221

NDB ID:

 6DLS

PDB ID:

6DLS 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, thallium acetate soaked structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.885Å R work:0.207R free:0.234

NDB ID:

 6DLT

PDB ID:

6DLT 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, native structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.224R free:0.243

NDB ID:

 6DMC

PDB ID:

6DMC 

Release:

2018-11-14

Title:

ppGpp Riboswitch bound to ppGpp, native structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.228R free:0.259

NDB ID:

 6DMD

PDB ID:

6DMD 

Release:

2018-11-14

Title:

ppGpp Riboswitch bound to ppGpp, manganese chloride structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.65Å R work:0.217R free:0.272

NDB ID:

 6DME

PDB ID:

6DME 

Release:

2018-11-14

Title:

ppGpp Riboswitch bound to ppGpp, thallium acetate structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.702Å R work:0.199R free:0.242

NDB ID:

 6DNR

PDB ID:

6DNR 

Release:

2018-11-14

Title:

PRPP Riboswitch bound to PRPP, ligand-free structure

Classification:

RNA

Authors:

Peselis, A., Serganov, A.

Citation:

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol. 14 pp.887 - 894 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.896Å R work:0.212R free:0.273

NDB ID:

 5Z4A

PDB ID:

5Z4A 

Release:

2018-10-31

Title:

Structure of Tailor in complex with AGU RNA

Classification:

TRANSFERASE/RNA

Authors:

Cheng, L., Li, F., Jiang, Y., Yu, H., Xie, C., Shi, Y., Gong, Q.

Citation:

Structure of Tailor in complex with AGU RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.637Å R work:0.157R free:0.19

NDB ID:

 5Z4D

PDB ID:

5Z4D 

Release:

2018-10-31

Title:

Structure of Tailor in complex with AGUU RNA

Classification:

TRANSFERASE/RNA

Authors:

Cheng, L., Li, F., Jiang, Y., Yu, H., Xie, C., Shi, Y., Gong, Q.

Citation:

Structure of Tailor in complex with AGUU RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.803Å R work:0.157R free:0.184

NDB ID:

 5Z4J

PDB ID:

5Z4J 

Release:

2018-10-31

Title:

Structure of Tailor in complex with U4 RNA

Classification:

TRANSFERASE/RNA

Authors:

Cheng, L., Li, F., Jiang, Y., Yu, H., Xie, C., Shi, Y., Gong, Q.

Citation:

Structure of Tailor in complex with U4 RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.82Å R work:0.155R free:0.192

NDB ID:

 6AI6

PDB ID:

6AI6 

Release:

2018-10-31

Title:

Crystal structure of SpCas9-NG

Classification:

HYDROLASE/RNA/DNA

Authors:

Nishimasu, H., Shi, X., Ishiguro, S., Gao, L., Hirano, S., Okazaki, S., Noda, T., Abudayyeh, O.O., Gootenberg, J.S., Mori, H., Oura, S., Holmes, B., Tanaka, M., Seki, M., Hirano, H., Aburatani, H., Ishitani, R., Ikawa, M., Yachie, N., Zhang, F., Nureki, O.

Citation:

Engineered CRISPR-Cas9 nuclease with expanded targeting space
Science 361 pp.1259 - 1262 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.217R free:0.243

NDB ID:

 6BHJ

PDB ID:

6BHJ 

Release:

2018-10-31

Title:

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer

Classification:

TRANSFERASE/DNA

Authors:

Tuske, S., Zheng, J., Olson, E.D., Ruiz, F.X., Pascal, B.D., Bauman, J.D., Das, K., DeStefano, J.J., Musier-Forsyth, K., Griffin, P.R., Arnold, E.

Citation:

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.81Å R work:0.203R free:0.244

NDB ID:

 6CU1

PDB ID:

6CU1 

Release:

2018-10-31

Title:

X-ray structure of the S. typhimurium YrlA effector-binding module

Classification:

RNA

Authors:

Wang, W., Chen, X., Wolin, S.L., Xiong, Y.

Citation:

Structural Basis for tRNA Mimicry by a Bacterial Y RNA.
Structure pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.221R free:0.237

NDB ID:

 6G2K

PDB ID:

6G2K 

Release:

2018-10-31

Title:

Structure of HuR RRM3 in complex with RNA (UUUUUU)

Classification:

RNA BINDING PROTEIN

Authors:

Pabis, M., Sattler, M.

Citation:

Structure of HuR RRM3 in complex with RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.01Å R work:0.168R free:0.234

NDB ID:

 6GD2

PDB ID:

6GD2 

Release:

2018-10-31

Title:

Structure of HuR RRM3 in complex with RNA

Classification:

RNA BINDING PROTEIN

Authors:

Pabis, M., Sattler, M.

Citation:

Structure of HuR RRM3 in complex with RNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.191R free:0.245

NDB ID:

 6GD3

PDB ID:

6GD3 

Release:

2018-10-31

Title:

Structure of HuR RRM3 in complex with RNA (UAUUUA)

Classification:

RNA BINDING PROTEIN

Authors:

Pabis, M., Sattler, M.

Citation:

Structure of HuR RRM3 in complex with RNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.35Å R work:0.164R free:0.188

NDB ID:

 6GE1

PDB ID:

6GE1 

Release:

2018-10-31

Title:

Solution structure of the r(UGGUGGU)4 RNA quadruplex

Classification:

RNA

Authors:

Andralojc, W., Malgowska, M., Sarzynska, J., Pasternak, K., Szpotkowski, K., Kierzek, R., Gdaniec, Z.

Citation:

Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus.
RNA pp. - 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6HCT

PDB ID:

6HCT 

Release:

2018-10-31

Title:

Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn

Classification:

RNA

Authors:

Huang, L., Ashraf, S., Lilley, D.M.J.

Citation:

The role of RNA structure in translational regulation by L7Ae protein in archaea.
RNA pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.091Å R work:0.186R free:0.236

NDB ID:

 6MCE

PDB ID:

6MCE 

Release:

2018-10-31

Title:

Solution structure of HIV-1 TAR with Tat RNA Binding Domain

Classification:

TRANSCRIPTION

Authors:

Pham, V.V., Salguero, C., Khan, S.N., Meagher, J.L., Brown, W.C., Humbert, N., de Rocquigny, H., Smith, J.L., D'Souza, V.M.

Citation:

HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun 9 pp.4266 - 4266 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6MCF

PDB ID:

6MCF 

Release:

2018-10-31

Title:

Solution structure of 7SK stem-loop 1 with HIV-1 Tat RNA Binding Domain

Classification:

TRANSCRIPTION

Authors:

Pham, V.V., Salguero, C., Khan, S.N., Meagher, J.L., Brown, W.C., Humbert, N., de Rocquigny, H., Smith, J.L., D'Souza, V.M.

Citation:

HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun 9 pp.4266 - 4266 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6MCI

PDB ID:

6MCI 

Release:

2018-10-31

Title:

Solution structure of 7SK stem-loop 1

Classification:

RNA

Authors:

Pham, V.V., Salguero, C., Khan, S.N., Meagher, J.L., Brown, W.C., Humbert, N., de Rocquigny, H., Smith, J.L., D'Souza, V.M.

Citation:

HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun 9 pp.4266 - 4266 2018

Experiment:

 SOLUTION NMR

NDB ID:

 5ZQ0

PDB ID:

5ZQ0 

Release:

2018-10-24

Title:

Crystal structure of spRlmCD with U747loop RNA

Classification:

TRANSFERASE/RNA

Authors:

Jiang, Y., Yu, H., Li, F., Cheng, L., Zhu, L., Shi, Y., Gong, Q.

Citation:

Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD
PLoS Pathog. 14 pp.e1007379 - e1007379 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.0Å R work:0.173R free:0.204

NDB ID:

 5ZQ1

PDB ID:

5ZQ1 

Release:

2018-10-24

Title:

Crystal structure of spRlmCD with U1939loop RNA at 3.10 angstrom

Classification:

TRANSFERASE/RNA

Authors:

Jiang, Y., Yu, H., Li, F., Cheng, L., Zhu, L., Shi, Y., Gong, Q.

Citation:

Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD
PLoS Pathog. 14 pp.e1007379 - e1007379 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.195R free:0.237

NDB ID:

 5ZQ8

PDB ID:

5ZQ8 

Release:

2018-10-24

Title:

Crystal structure of spRlmCD with U747 stemloop RNA

Classification:

TRANSFERASE/RNA

Authors:

Jiang, Y., Yu, H., Li, F., Cheng, L., Zhu, L., Shi, Y., Gong, Q.

Citation:

Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD
PLoS Pathog. 14 pp.e1007379 - e1007379 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.18Å R work:0.245R free:0.303

NDB ID:

 5ZTH

PDB ID:

5ZTH 

Release:

2018-10-24

Title:

Crystal structure of spRlmCD with U1939loop RNA at 3.24 angstrom

Classification:

TRANSFERASE/RNA

Authors:

Jiang, Y., Yu, H., Li, F., Cheng, L., Zhu, L., Shi, Y., Gong, Q.

Citation:

Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD
PLoS Pathog. 14 pp.e1007379 - e1007379 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.24Å R work:0.212R free:0.268

NDB ID:

 5YZE

PDB ID:

5YZE 

Release:

2018-10-17

Title:

Crystal structure of the [Co2+-(chromomycin A3)2]-d(CCG)3 complex

Classification:

ANTIBIOTICS/DNA

Authors:

Chen, Y.W., Satange, R., Wu, P.C., Jhan, C.R., Chang, C.K., Chung, K.R., Waring, M.J., Lin, S.W., Hsieh, L.C., Hou, M.H.

Citation:

CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex
Int J Mol Sci 19 pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.87Å R work:0.194R free:0.252

NDB ID:

 6G63

PDB ID:

6G63 

Release:

2018-10-03

Title:

RNase E in complex with sRNA RrpA

Classification:

RNA BINDING PROTEIN

Authors:

Bandyra, K.J., Wandzik, J.M., Luisi, B.F.

Citation:

Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E.
Mol. Cell 72 pp.275 - 285.e4 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.95Å R work:0.274R free:0.296

NDB ID:

 5VPO

PDB ID:

5VPO 

Release:

2018-09-26

Title:

The 70S P-site ASL SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.34Å R work:0.237R free:0.266

Equivalence Class: 

NR_all_65795.38 

Eq. Class Rep:

4LFB

NDB ID:

 5VPO

PDB ID:

5VPO 

Release:

2018-09-26

Title:

The 70S P-site ASL SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.34Å R work:0.237R free:0.266

Equivalence Class: 

NR_all_97519.33 

Eq. Class Rep:

4Y4O

NDB ID:

 5VPO

PDB ID:

5VPO 

Release:

2018-09-26

Title:

The 70S P-site ASL SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.34Å R work:0.237R free:0.266

Equivalence Class: 

NR_all_42622.33 

Eq. Class Rep:

5FDV

NDB ID:

 5VPO

PDB ID:

5VPO 

Release:

2018-09-26

Title:

The 70S P-site ASL SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.34Å R work:0.237R free:0.266

Equivalence Class: 

NR_all_45251.1 

Eq. Class Rep:

5VPO

NDB ID:

 5VPP

PDB ID:

5VPP 

Release:

2018-09-26

Title:

The 70S P-site tRNA SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.9Å

Equivalence Class: 

NR_all_65795.38 

Eq. Class Rep:

4LFB

NDB ID:

 5VPP

PDB ID:

5VPP 

Release:

2018-09-26

Title:

The 70S P-site tRNA SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.9Å

Equivalence Class: 

NR_all_97519.33 

Eq. Class Rep:

4Y4O

NDB ID:

 5VPP

PDB ID:

5VPP 

Release:

2018-09-26

Title:

The 70S P-site tRNA SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.9Å

Equivalence Class: 

NR_all_42622.33 

Eq. Class Rep:

5FDV

NDB ID:

 5VPP

PDB ID:

5VPP 

Release:

2018-09-26

Title:

The 70S P-site tRNA SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.9Å

Equivalence Class: 

NR_all_47640.1 

Eq. Class Rep:

5VPP

NDB ID:

 5VPP

PDB ID:

5VPP 

Release:

2018-09-26

Title:

The 70S P-site tRNA SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.11226 - 11231 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.9Å

Equivalence Class: 

NR_all_89652.1 

Eq. Class Rep:

5VPP

NDB ID:

 6DU4

PDB ID:

6DU4 

Release:

2018-09-26

Title:

Crystal structure of hMettl16 catalytic domain in complex with MAT2A 3'UTR hairpin 1

Classification:

Transferase/RNA

Authors:

Doxtader, K.A., Wang, P., Scarborough, A.M., Seo, D., Conrad, N.K., Nam, Y.

Citation:

Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor.
Mol. Cell 71 pp.1001 - 1011.e4 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.151R free:0.172

Equivalence Class: 

NR_all_51124.1 

Eq. Class Rep:

6DU4

NDB ID:

 6DU5

PDB ID:

6DU5 

Release:

2018-09-26

Title:

Crystal structure of hMettl16 catalytic domain in complex with MAT2A 3'UTR hairpin 6

Classification:

Transferase/RNA

Authors:

Doxtader, K.A., Wang, P., Scarborough, A.M., Seo, D., Conrad, N.K., Nam, Y.

Citation:

Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor.
Mol. Cell 71 pp.1001 - 1011.e4 2018

Experiment:

 X-RAY DIFFRACTION Resolution:3.006Å R work:0.247R free:0.264

Equivalence Class: 

NR_all_34039.1 

Eq. Class Rep:

6DU5

NDB ID:

 6FFR

PDB ID:

6FFR 

Release:

2018-09-26

Title:

DNA-RNA Hybrid Quadruplex with Flipped Tetrad

Classification:

DNA-RNA HYBRID

Authors:

Haase, L., Dickerhoff, J., Weisz, K.

Citation:

DNA-RNA Hybrid Quadruplexes Reveal Interactions that Favor RNA Parallel Topologies.
Chemistry 24 pp.15365 - 15371 2018

Experiment:

 SOLUTION NMR

NDB ID:

 6H9H

PDB ID:

6H9H 

Release:

2018-09-26

Title:

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease

Classification:

RNA BINDING PROTEIN

Authors:

Ozcan, A., Pausch, P., Linden, A., Wulf, A., Schuhle, K., Heider, J., Urlaub, H., Heimerl, T., Bange, G., Randau, L.

Citation:

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum.
Nat Microbiol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.75Å R work:0.212R free:0.237

Equivalence Class: 

NR_all_36664.1 

Eq. Class Rep:

6H9H

NDB ID:

 6H9H

PDB ID:

6H9H 

Release:

2018-09-26

Title:

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease

Classification:

RNA BINDING PROTEIN

Authors:

Ozcan, A., Pausch, P., Linden, A., Wulf, A., Schuhle, K., Heider, J., Urlaub, H., Heimerl, T., Bange, G., Randau, L.

Citation:

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum.
Nat Microbiol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:1.75Å R work:0.212R free:0.237

Equivalence Class: 

NR_all_81648.1 

Eq. Class Rep:

6H9H

NDB ID:

 6H9I

PDB ID:

6H9I 

Release:

2018-09-26

Title:

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease

Classification:

RNA BINDING PROTEIN

Authors:

Ozcan, A., Pausch, P., Linden, A., Wulf, A., Schuhle, K., Heider, J., Urlaub, H., Heimerl, T., Bange, G., Randau, L.

Citation:

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum.
Nat Microbiol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.29Å R work:0.223R free:0.254

Equivalence Class: 

NR_all_14951.1 

Eq. Class Rep:

6H9I

NDB ID:

 6H9I

PDB ID:

6H9I 

Release:

2018-09-26

Title:

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease

Classification:

RNA BINDING PROTEIN

Authors:

Ozcan, A., Pausch, P., Linden, A., Wulf, A., Schuhle, K., Heider, J., Urlaub, H., Heimerl, T., Bange, G., Randau, L.

Citation:

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum.
Nat Microbiol pp. - 2018

Experiment:

 X-RAY DIFFRACTION Resolution:2.29Å R work:0.223R free:0.254

Equivalence Class: 

NR_all_36641.1 

Eq. Class Rep:

6H9I

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