A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Nov-2020 number of released structures: 11059
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5485  Download results as an excel file       Gallery view

NDB ID:

6HPJ

PDB ID:

6HPJ 

Release:

2020-11-18

Title:

Structure of human SRSF1 RRM1 bound to AACAAA RNA

Classification:

RNA BINDING PROTEIN

Authors:

Allain, F.T.H., Clery, A.

Citation:

Structure of RRM bound to RNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_58013.1 

Eq. Class Rep:

6HPJ

NDB ID:

6VEM

PDB ID:

6VEM 

Release:

2020-11-18

Title:

Structure of RNA octamer

Classification:

RNA

Authors:

Mikami, A., Erande, N., Matsuda, S., Kel'in, A., Woods, L.B., Chickering, T., Pallan, P.S., Schlegel, M.K., Zlatev, I., Egli, M., Manoharan, M.

Citation:

Synthesis, chirality-dependent conformational and biological properties of siRNAs containing 5'-(R)- and 5'-(S)-C-methyl-guanosine.
Nucleic Acids Res. 48 pp.10101 - 10124 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.56Å R work:0.177R free:0.243

Equivalence Class: 

NR_all_99259.1 

Eq. Class Rep:

6VEM

NDB ID:

6WBR

PDB ID:

6WBR 

Release:

2020-11-18

Title:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM

Classification:

RNA BINDING PROTEIN/DNA/RNA

Authors:

Das, A., Li, H.

Citation:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.91Å R work:0.224R free:0.266

Equivalence Class: 

NR_all_12576.1 

Eq. Class Rep:

6WBR

NDB ID:

6WC0

PDB ID:

6WC0 

Release:

2020-11-18

Title:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM

Classification:

RNA BINDING PROTEIN/RNA/DNA

Authors:

Das, A., Li, H.

Citation:

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.61Å R work:0.237R free:0.303

Equivalence Class: 

NR_all_12576.1 

Eq. Class Rep:

6WBR

NDB ID:

6VWT

PDB ID:

6VWT 

Release:

2020-11-11

Title:

Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Classification:

RNA

Authors:

Ramakrishnan, S., Stagno, J.R., Conrad, C., Ding, J., Yu, P., Bhandari, Y., Cantero-Camacho, A., Lee, Y.-T., Pauly, G., Yefanov, O., Wiedorn, M., Knoska, J., Oberthuer, D., White, T.A., Barty, A., Mariani, V., Heinz, W.F., Magidson, V., Lockett, S., Hunter, M.S., Boutet, S., Zatsepin, N., Li, C., Grant, T.D., Spence, J.C.H., Chapman, H.N., Wang, Y.-X.

Citation:

Synchronized behaviors of riboswitch molecules in crystals
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.225R free:0.25

Equivalence Class: 

NR_all_94683.1 

Eq. Class Rep:

4XNR

NDB ID:

6VWV

PDB ID:

6VWV 

Release:

2020-11-11

Title:

Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding

Classification:

RNA

Authors:

Ramakrishnan, S., Stagno, J.R., Conrad, C., Ding, J., Yu, P., Bhandari, Y., Cantero-Camacho, A., Lee, Y.-T., Pauly, G., Yefanov, O., Wiedorn, M., Knoska, J., Oberthuer, D., White, T.A., Barty, A., Mariani, V., Heinz, W.F., Magidson, V., Lockett, S., Hunter, M.S., Boutet, S., Zatsepin, N., Li, C., Grant, T.D., Spence, J.C.H., Chapman, H.N., Wang, Y.-X.

Citation:

Synchronized behaviors of riboswitch molecules in crystals
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.246R free:0.279

Equivalence Class: 

NR_all_94683.1 

Eq. Class Rep:

4XNR

NDB ID:

7ACS

PDB ID:

7ACS 

Release:

2020-11-04

Title:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer dsRNA

Classification:

VIRAL PROTEIN

Authors:

Veverka, V.

Citation:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer ssRNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_88121.1 

Eq. Class Rep:

7ACS

NDB ID:

7CHD

PDB ID:

7CHD 

Release:

2020-11-04

Title:

AtaT complexed with acetyl-methionyl-tRNAfMet

Classification:

TRANSFERASE

Authors:

Yashiro, Y., Sakaguchi, Y., Suzuki, T., Tomita, K.

Citation:

Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli.
Nat Commun 11 pp.5438 - 5438 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.804Å R work:0.286R free:0.34

Equivalence Class: 

NR_all_35542.77 

Eq. Class Rep:

5L4O

NDB ID:

6LTP

PDB ID:

6LTP 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 binary complex

Classification:

HYDROLASE/RNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.207R free:0.23

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

6LTR

PDB ID:

6LTR 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with single Mg2+ bound in catalytic pocket

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.51Å R work:0.197R free:0.225

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

6LTU

PDB ID:

6LTU 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with double Mg2+ bound in catalytic pocket

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.57Å R work:0.202R free:0.228

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

6LU0

PDB ID:

6LU0 

Release:

2020-10-28

Title:

Crystal structure of Cas12i2 ternary complex with 12 nt spacer

Classification:

HYDROLASE/RNA/DNA

Authors:

Huang, X., Sun, W., Cheng, Z., Chen, M., Li, X., Wang, J., Sheng, G., Gong, W., Wang, Y.

Citation:

Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun 11 pp.5241 - 5241 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.22Å R work:0.206R free:0.23

Equivalence Class: 

NR_all_26368.1 

Eq. Class Rep:

6LTU

NDB ID:

6SNJ

PDB ID:

6SNJ 

Release:

2020-10-28

Title:

Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III

Classification:

SPLICING

Authors:

Jutzi, D., Campagne, S., Schmidt, R., Reber, S., Mechtersheimer, J., Gypas, F., Schweingruber, C., Colombo, M., von Schroetter, C., Loughlin, F.E., Devoy, A., Hedlund, E., Zavolan, M., Allain, F.H., Ruepp, M.D.

Citation:

Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced Amyotrophic Lateral Sclerosis
Nat Commun pp. - 2020

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_11925.1 

Eq. Class Rep:

6SNJ

NDB ID:

6ZOT

PDB ID:

6ZOT 

Release:

2020-10-28

Title:

Crystal structure of YTHDF3 YTH domain in complex with m6A RNA

Classification:

RNA BINDING PROTEIN

Authors:

Li, Y., Bedi, R.K., Moroz-Omori, E.V., Caflisch, A.

Citation:

Structural and Dynamic Insights into Redundant Function of YTHDF Proteins.
J.Chem.Inf.Model. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.215R free:0.275

Equivalence Class: 

NR_all_80216.1 

Eq. Class Rep:

6ZOT

NDB ID:

7ACT

PDB ID:

7ACT 

Release:

2020-10-28

Title:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNA

Classification:

VIRAL PROTEIN

Authors:

Veverka, V.

Citation:

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNA
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_47525.1 

Eq. Class Rep:

7ACT

NDB ID:

6UP0

PDB ID:

6UP0 

Release:

2020-10-21

Title:

Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin

Classification:

RNA

Authors:

Trachman, R.J., Ferre-D'Amare, A.R.

Citation:

RNA aptamer FRET pair
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.173R free:0.214

Equivalence Class: 

NR_all_08239.1 

Eq. Class Rep:

6E8S

NDB ID:

6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

Equivalence Class: 

NR_all_52787.1 

Eq. Class Rep:

6NTA

NDB ID:

6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

Equivalence Class: 

NR_all_52787.1 

Eq. Class Rep:

6NTA

NDB ID:

6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

Equivalence Class: 

NR_all_56101.1 

Eq. Class Rep:

6SZS

NDB ID:

6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

Equivalence Class: 

NR_all_75816.1 

Eq. Class Rep:

5VPP

NDB ID:

6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

Equivalence Class: 

NR_all_56101.1 

Eq. Class Rep:

6SZS

NDB ID:

6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_65795.57 

Eq. Class Rep:

4LFB

NDB ID:

6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_97519.52 

Eq. Class Rep:

4Y4O

NDB ID:

6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_42622.52 

Eq. Class Rep:

5FDV

NDB ID:

6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife 9 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

Equivalence Class: 

NR_all_95053.1 

Eq. Class Rep:

6OSI

NDB ID:

6XH0

PDB ID:

6XH0 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.9

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.228R free:0.288

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

6XH1

PDB ID:

6XH1 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.7 mutant

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.601Å R work:0.215R free:0.254

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

6XH2

PDB ID:

6XH2 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM 6.6

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.71Å R work:0.191R free:0.209

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

6XH3

PDB ID:

6XH3 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.3

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.
J.Biol.Chem. pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.353Å R work:0.212R free:0.252

Equivalence Class: 

NR_all_32738.1 

Eq. Class Rep:

6XH2

NDB ID:

6YRB

PDB ID:

6YRB 

Release:

2020-10-14

Title:

Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 7.5

Classification:

VIRAL PROTEIN

Authors:

Serris, A., Stass, R., Bignon, E.A., Muena, N.A., Manuguerra, J.C., Jangra, R.K., Li, S., Chandran, K., Tischler, N.D., Huiskonen, J.T., Rey, F.A., Guardado-Calvo, P.

Citation:

The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell 183 pp.442 - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.351Å R work:0.225R free:0.265

Equivalence Class: 

NR_all_65417.1 

Eq. Class Rep:

6YRQ

NDB ID:

6YRQ

PDB ID:

6YRQ 

Release:

2020-10-14

Title:

Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 4.6

Classification:

VIRAL PROTEIN

Authors:

Serris, A., Stass, R., Bignon, E.A., Muena, N.A., Manuguerra, J.C., Jangra, R.K., Li, S., Chandran, K., Tischler, N.D., Huiskonen, J.T., Rey, F.A., Guardado-Calvo, P.

Citation:

The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell 183 pp.442 - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.902Å R work:0.187R free:0.23

Equivalence Class: 

NR_all_65417.1 

Eq. Class Rep:

6YRQ

NDB ID:

7K16

PDB ID:

7K16 

Release:

2020-10-14

Title:

Tamana Bat Virus xrRNA1

Classification:

RNA

Authors:

Jones, R.A., Steckelberg, A.L., Vicens, Q., Szucs, M.J., Akiyama, B.M., Kieft, J.S.

Citation:

Different tertiary interactions create the same important 3-D features in a distinct flavivirus xrRNA.
Rna pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.186R free:0.246

Equivalence Class: 

NR_all_48255.1 

Eq. Class Rep:

7K16

NDB ID:

6SX0

PDB ID:

6SX0 

Release:

2020-10-07

Title:

Specific dsRNA recognition by wild type H7N1 NS1 RNA-binding domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.171R free:0.202

Equivalence Class: 

NR_all_48564.1 

Eq. Class Rep:

6SX2

NDB ID:

6SX2

PDB ID:

6SX2 

Release:

2020-10-07

Title:

dsRNA recognition by R38AK41A mutant of H7N1 NS1 RNA Binding Domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.167R free:0.191

Equivalence Class: 

NR_all_48564.1 

Eq. Class Rep:

6SX2

NDB ID:

6XLV

PDB ID:

6XLV 

Release:

2020-10-07

Title:

Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site

Classification:

RNA BINDING PROTEIN/SPLICING

Authors:

Maji, D., Jenkins, J.L., Kielkopf, C.L.

Citation:

Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.141R free:0.168

Equivalence Class: 

NR_all_94195.1 

Eq. Class Rep:

6XLW