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As of 27-Apr-2016 number of released structures: 8140
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2999  Download results as an excel file       Gallery view

NDB ID:

4XBF

PDB ID:

4XBF 

Release:

2016-04-27

Title:

Structure of LSD1:CoREST in complex with ssRNA

Classification:

Oxidoreductase/Transcription/RNA

Authors:

Luka, Z., Loukachevitch, L.V., Martin, W.J., Wagner, C., Reiter, N.J.

Citation:

Structural basis for RNA-mediated allosteric regulation of lysine specific demethylase-1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.803Å R work:0.201R free:0.226

NDB ID:

5HC9

PDB ID:

5HC9 

Release:

2016-04-27

Title:

Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA

Classification:

TRANSFERASE

Authors:

Yamashita, S., Tomita, K.

Citation:

Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme
Structure pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.214R free:0.263

NDB ID:

5HN2

PDB ID:

5HN2 

Release:

2016-04-27

Title:

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Classification:

RNA

Authors:

Wang, R., Luo, Z., He, K., Delaney, M.O., Chen, D., Sheng, J.

Citation:

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.122R free:0.14

NDB ID:

5HNJ

PDB ID:

5HNJ 

Release:

2016-04-27

Title:

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Classification:

RNA

Authors:

Wang, R., Luo, Z., He, K., Delaney, M.O., Chen, D., Sheng, J.

Citation:

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.24Å R work:0.133R free:0.154

NDB ID:

5HNQ

PDB ID:

5HNQ 

Release:

2016-04-27

Title:

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Classification:

RNA

Authors:

Wang, R., Luo, Z., He, K., Delaney, M.O., Chen, D., Sheng, J.

Citation:

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.221R free:0.261

NDB ID:

5I9D

PDB ID:

5I9D 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8A2 in complex with its target RNA U8A2

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.596Å R work:0.266R free:0.293

NDB ID:

5I9F

PDB ID:

5I9F 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U10 in complex with its target RNA U10

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.194Å R work:0.25R free:0.299

NDB ID:

5I9G

PDB ID:

5I9G 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8C2 in complex with its target RNA U8C2

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.288Å R work:0.225R free:0.247

NDB ID:

5I9H

PDB ID:

5I9H 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8G2 in complex with its target RNA U8G2

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.504Å R work:0.223R free:0.296

NDB ID:

5ID6

PDB ID:

5ID6 

Release:

2016-04-27

Title:

Structure of Cpf1/RNA Complex

Classification:

HYDROLASE

Authors:

Dong, D., Ren, K., Qiu, X., Zheng, J., Guo, M., Guan, X., Liu, H., Li, N., Zhang, B., Yang, D., Ma, C., Wang, S., Wu, D., Ma, Y., Fan, S., Wang, J., Gao, N., Huang, Z.

Citation:

The crystal structure of Cpf1 in complex with CRISPR RNA
Nature pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.382Å R work:0.202R free:0.26

NDB ID:

5IWA

PDB ID:

5IWA 

Release:

2016-04-27

Title:

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Classification:

TRANSCRIPTION

Authors:

Fabbretti, A., Schedlbauer, A., Brandi, L., Kaminishi, T., Giuliodori, A.M., Garofalo, R., Ochoa-Lizarralde, B., Takemoto, C., Yokoyama, S., Connell, S.R., Gualerzi, C.O., Fucini, P.

Citation:

Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding.
Proc.Natl.Acad.Sci.USA 113 pp.E2286 - E2295 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.166R free:0.217

NDB ID:

5J4B

PDB ID:

5J4B 

Release:

2016-04-27

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Soll, D., Steitz, T.A., Polikanov, Y.S.

Citation:

Insights into RNA binding by the anticancer drug cisplatin from the crystal structure of cisplatin-modified ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.217R free:0.263

NDB ID:

5J4C

PDB ID:

5J4C 

Release:

2016-04-27

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Soll, D., Steitz, T.A., Polikanov, Y.S.

Citation:

Insights into RNA binding by the anticancer drug cisplatin from the crystal structure of cisplatin-modified ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.219R free:0.268

NDB ID:

4ZDO

PDB ID:

4ZDO 

Release:

2016-04-20

Title:

The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)

Classification:

Transferase/RNA

Authors:

French, R.L., Simonovic, M.

Citation:

Structural basis for the early-onset neurological disorders caused by point mutations in human SepSecS
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.198R free:0.234

NDB ID:

4ZDP

PDB ID:

4ZDP 

Release:

2016-04-20

Title:

The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)

Classification:

Transferase/RNA

Authors:

French, R.L., Simonovic, M.

Citation:

Structural basis for the early-onset neurological disorders caused by point mutations in human SepSecS
to be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.703Å R work:0.2R free:0.232

NDB ID:

2N7X

PDB ID:

2N7X 

Release:

2016-04-13

Title:

Solution structure of microRNA 20b pre-element

Classification:

RNA

Authors:

Chen, Y., Zubovic, L., Yang, F., Godin, K., Pavelitz, T., Castellanos, J., Macchi, P., Varani, G.

Citation:

Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

2N82

PDB ID:

2N82 

Release:

2016-04-13

Title:

solution structure of the complex of microRNA 20b pre-element with Rbfox RRM

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chen, Y., Zubovic, L., Yang, F., Godin, K., Pavelitz, T., Castellanos, J., Macchi, P., Varani, G.

Citation:

Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer.
Nucleic Acids Res. pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

4Z7K

PDB ID:

4Z7K 

Release:

2016-04-13

Title:

Crystal structure of CRISPR RNA processing endoribonuclease Cas6b

Classification:

Hydrolase/RNA/DNA

Authors:

Li, H., Shao, Y., Richter, H., Randau, L.

Citation:

Dual binding-mediated CRISPR RNA Processing by Cas6b
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.223R free:0.278

NDB ID:

4Z7L

PDB ID:

4Z7L 

Release:

2016-04-13

Title:

Crystal structure of Cas6b

Classification:

Hydrolase/RNA

Authors:

Li, H., Shao, Y., Richter, H., Randau, L.

Citation:

Dual binding-mediated CRISPR RNA Processing by Cas6b
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.503Å R work:0.242R free:0.289

NDB ID:

5D99

PDB ID:

5D99 

Release:

2016-04-13

Title:

3DW4 redetermined ab initio by direct methods

Classification:

RNA

Authors:

Mooers, B.H.M.

Citation:

Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry
Acta Crystallogr.,Sect.D 72 pp.477 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:0.97Å R work:0.104R free:0.119

NDB ID:

5DA6

PDB ID:

5DA6 

Release:

2016-04-13

Title:

Atomic resolution crystal structure of double-stranded RNA 32 base pairs long determined from random starting phases angles in the presence of pseudo translational symmetry using the direct methods program SIR2014.

Classification:

RNA

Authors:

Mooers, B.H.M.

Citation:

Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry
Acta Crystallogr.,Sect.D 72 pp.477 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.05Å R work:0.128R free:0.156

NDB ID:

5ED1

PDB ID:

5ED1 

Release:

2016-04-13

Title:

Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from S. cerevisiae BDF2 gene

Classification:

HYDROLASE/RNA

Authors:

Matthews, M.M., Thomas, J.M., Zheng, Y., Tran, K., Phelps, K.J., Scott, A.I., Havel, J., Fisher, A.J., Beal, P.A.

Citation:

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity.
Nat.Struct.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.77Å R work:0.162R free:0.223

NDB ID:

5ED2

PDB ID:

5ED2 

Release:

2016-04-13

Title:

Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Classification:

HYDROLASE/RNA

Authors:

Matthews, M.M., Thomas, J.M., Zheng, Y., Tran, K., Phelps, K.J., Scott, A.I., Havel, J., Fisher, A.J., Beal, P.A.

Citation:

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity.
Nat.Struct.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.187R free:0.207

NDB ID:

5HP2

PDB ID:

5HP2 

Release:

2016-04-13

Title:

Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AU basepair at reaction site

Classification:

HYDROLASE/RNA

Authors:

Matthews, M.M., Thomas, J.M., Zheng, Y., Tran, K., Phelps, K.J., Scott, A.I., Havel, J., Fisher, A.J., Beal, P.A.

Citation:

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity.
Nat.Struct.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.983Å R work:0.166R free:0.246

NDB ID:

5HP3

PDB ID:

5HP3 

Release:

2016-04-13

Title:

Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AC mismatch at reaction site

Classification:

HYDROLASE/RNA

Authors:

Matthews, M.M., Thomas, J.M., Zheng, Y., Tran, K., Phelps, K.J., Scott, A.I., Havel, J., Fisher, A.J., Beal, P.A.

Citation:

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity.
Nat.Struct.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.091Å R work:0.162R free:0.237

NDB ID:

5HR6

PDB ID:

5HR6 

Release:

2016-04-13

Title:

X-ray crystal structure of C118A RlmN with cross-linked tRNA purified from Escherichia coli

Classification:

TRANSFERASE/RNA

Authors:

Schwalm, E.L., Grove, T.L., Booker, S.J., Boal, A.K.

Citation:

Crystallographic capture of a radical S-adenosylmethionine enzyme in the act of modifying tRNA.
Science 352 pp.309 - 312 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.88Å R work:0.181R free:0.228

NDB ID:

5HR7

PDB ID:

5HR7 

Release:

2016-04-13

Title:

X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA

Classification:

OXIDOREDUCTASE/RNA

Authors:

Schwalm, E.L., Grove, T.L., Booker, S.J., Boal, A.K.

Citation:

Crystallographic capture of a radical S-adenosylmethionine enzyme in the act of modifying tRNA.
Science 352 pp.309 - 312 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.215R free:0.247

NDB ID:

5CR2

PDB ID:

5CR2 

Release:

2016-04-06

Title:

E. coli MazF in complex with single strand DNA substrate analog

Classification:

HYDROLASE

Authors:

Zorzini, V., Mernik, A., Lah, J., Sterckx, Y.G., De Jonge, N., Garcia-Pino, A., De Greve, H., Versees, W., Loris, R.

Citation:

Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.223R free:0.29

NDB ID:

5DNO

PDB ID:

5DNO 

Release:

2016-04-06

Title:

Crystal structure of Mmi1 YTH domain complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wang, C.Y., Zhu, Y.W., Bao, H.Y., Jiang, Y.Y., Xu, C., Wu, J.H., Shi, Y.Y.

Citation:

A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1
Nucleic Acids Res. 44 pp.969 - 982 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.175R free:0.215

NDB ID:

5F5F

PDB ID:

5F5F 

Release:

2016-04-06

Title:

X-ray structure of Roquin ROQ domain in complex with a Selex-derived hexa-loop RNA motif

Classification:

RNA BINDING PROTEIN

Authors:

Janowski, R., Heinz, G.A., Schlundt, A., Wommelsdorf, N., Brenner, S., Gruber, A.R., Blank, M., Buch, T., Buhmann, R., Zavolan, M., Niessing, D., Heissmeyer, V., Sattler, M.

Citation:

Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.
Nat Commun 7 pp.11032 - 11032 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.183R free:0.233

NDB ID:

5F5H

PDB ID:

5F5H 

Release:

2016-04-06

Title:

X-ray structure of Roquin ROQ domain in complex with Ox40 hexa-loop RNA motif

Classification:

RNA BINDING PROTEIN

Authors:

Janowski, R., Heinz, G.A., Schlundt, A., Wommelsdorf, N., Brenner, S., Gruber, A.R., Blank, M., Buch, T., Buhmann, R., Zavolan, M., Niessing, D., Heissmeyer, V., Sattler, M.

Citation:

Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.
Nat Commun 7 pp.11032 - 11032 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.23Å R work:0.216R free:0.256

NDB ID:

5HAU

PDB ID:

5HAU 

Release:

2016-04-06

Title:

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Gagnon, M.G., Roy, R.N., Lomakin, I.B., Florin, T., Mankin, A.S., Steitz, T.A.

Citation:

Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res. 44 pp.2439 - 2450 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.208R free:0.264

NDB ID:

5HCP

PDB ID:

5HCP 

Release:

2016-04-06

Title:

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Gagnon, M.G., Roy, R.N., Lomakin, I.B., Florin, T., Mankin, A.S., Steitz, T.A.

Citation:

Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res. 44 pp.2439 - 2450 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.894Å R work:0.211R free:0.267

NDB ID:

5HCQ

PDB ID:

5HCQ 

Release:

2016-04-06

Title:

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Gagnon, M.G., Roy, R.N., Lomakin, I.B., Florin, T., Mankin, A.S., Steitz, T.A.

Citation:

Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res. 44 pp.2439 - 2450 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.801Å R work:0.2R free:0.25

NDB ID:

5HCR

PDB ID:

5HCR 

Release:

2016-04-06

Title:

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Gagnon, M.G., Roy, R.N., Lomakin, I.B., Florin, T., Mankin, A.S., Steitz, T.A.

Citation:

Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res. 44 pp.2439 - 2450 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.215R free:0.268

NDB ID:

5HD1

PDB ID:

5HD1 

Release:

2016-04-06

Title:

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome/Antibiotic

Authors:

Gagnon, M.G., Roy, R.N., Lomakin, I.B., Florin, T., Mankin, A.S., Steitz, T.A.

Citation:

Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res. 44 pp.2439 - 2450 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.219R free:0.272

NDB ID:

5I4A

PDB ID:

5I4A 

Release:

2016-03-30

Title:

X-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kaya, E., Doxzen, K.W., Knoll, K.R., Wilson, R.C., Strutt, S.C., Kranzusch, P.J., Doudna, J.A.

Citation:

A bacterial Argonaute with noncanonical guide RNA specificity.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.949Å R work:0.215R free:0.238

NDB ID:

5IPL

PDB ID:

5IPL 

Release:

2016-03-30

Title:

SigmaS-transcription initiation complex with 4-nt nascent RNA

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Liu, B., Zuo, Y., Steitz, T.A.

Citation:

Structures of E. coli sigma S-transcription initiation complexes provide new insights into polymerase mechanism.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.247R free:0.293

NDB ID:

5IPM

PDB ID:

5IPM 

Release:

2016-03-30

Title:

SigmaS-transcription initiation complex with 4-nt nascent RNA

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Liu, B., Zuo, Y., Steitz, T.A.

Citation:

Structures of E. coli sigma S-transcription initiation complexes provide new insights into polymerase mechanism.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.2Å R work:0.27R free:0.33

NDB ID:

5IPN

PDB ID:

5IPN 

Release:

2016-03-30

Title:

SigmaS-transcription initiation complex with 4-nt nascent RNA

Classification:

TRANSCRIPTION, TRANSFERASE/DNA/RNA

Authors:

Liu, B., Zuo, Y., Steitz, T.A.

Citation:

Structures of E. coli sigma S-transcription initiation complexes provide new insights into polymerase mechanism.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.61Å R work:0.279R free:0.344

NDB ID:

5F0Q

PDB ID:

5F0Q 

Release:

2016-03-23

Title:

Crystal structure of C-terminal domain of the human DNA primase large subunit with bound DNA template/RNA primer

Classification:

Tranferase/DNA/RNA

Authors:

Baranovskiy, A.G., Babayeva, N.D., Zhang, Y., Gu, J., Suwa, Y., Pavlov, Y.I., Tahirov, T.H.

Citation:

MECHANISM OF CONCERTED RNA-DNA PRIMER SYNTHESIS BY THE HUMAN PRIMOSOME.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.21Å R work:0.223R free:0.257

NDB ID:

5F0S

PDB ID:

5F0S 

Release:

2016-03-23

Title:

Crystal structure of C-terminal domain of the human DNA primase large subunit with bound DNA template/RNA primer and manganese ion

Classification:

Replication/DNA/RNA

Authors:

Baranovskiy, A.G., Babayeva, N.D., Zhang, Y., Gu, J., Suwa, Y., Pavlov, Y.I., Tahirov, T.H.

Citation:

MECHANISM OF CONCERTED RNA-DNA PRIMER SYNTHESIS BY THE HUMAN PRIMOSOME.
J.Biol.Chem. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.231R free:0.268

NDB ID:

NA3391

PDB ID:

5FQ5 

Release:

2016-03-23

Title:

Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing

Classification:

HYDROLASE/DNA

Authors:

Olieric, V., Weinert, T., Finke, A.D., Anders, C., Li, D., Olieric, N., Borca, C.N., Steinmetz, M.O., Caffrey, M., Jinek, M., Wang, M.

Citation:

Data-Collection Strategy for Challenging Native Sad Phasing.
Acta Crystallogr.,Sect.D 72 pp.421 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.136Å R work:0.19R free:0.224

NDB ID:

4Y91

PDB ID:

4Y91 

Release:

2016-03-16

Title:

Crystal Structure of a Thermotoga maritima Hfq homolog

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Patterson, J., Randolph, P.S., Mura, C.

Citation:

Crystal Structure of a Thermotoga maritima Hfq homolog
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.656Å R work:0.183R free:0.246

NDB ID:

5CNR

PDB ID:

5CNR 

Release:

2016-03-09

Title:

Crystal structure-guided design of self-assembling RNA nano triangles

Classification:

RNA

Authors:

Boerneke, M.A., Dibrov, S.M., Hermann, T.

Citation:

Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.
Angew.Chem.Int.Ed.Engl. 55 pp.4097 - 4100 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.59Å R work:0.192R free:0.244

NDB ID:

5E17

PDB ID:

5E17 

Release:

2016-03-09

Title:

T. thermophilus transcription initiation complex having a RRR discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 7 (RPo-GGG-7)

Classification:

transcription/dna/rna

Authors:

Winkelman, J.T., Vvedenskaya, I.O., Zhang, Y., Zhang, Y., Bird, J.G., Taylor, D.M., Gourse, R.L., Ebright, R.H., Nickels, B.E.

Citation:

Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
Science 351 pp.1090 - 1093 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.214R free:0.259

NDB ID:

5E18

PDB ID:

5E18 

Release:

2016-03-09

Title:

T. thermophilus transcription initiation complex having a YYY discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 8 (RPo-CCC-8)

Classification:

transcription/dna/rna

Authors:

Zhang, Y., Ebright, R.H., Nickels, B.E.

Citation:

Crystal structure of Thermus thermophilus transcription initiation complex containing nonconsensus discriminator sequence (CCC) and 7 nt of RNA
Science pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.237R free:0.283

NDB ID:

5EAO

PDB ID:

5EAO 

Release:

2016-02-24

Title:

Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mg2+

Classification:

RNA

Authors:

Mir, A., Golden, B.L.

Citation:

Two Active Site Divalent Ions in the Crystal Structure of the Hammerhead Ribozyme Bound to a Transition State Analogue.
Biochemistry 55 pp.633 - 636 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.988Å R work:0.228R free:0.269

NDB ID:

5EAQ

PDB ID:

5EAQ 

Release:

2016-02-24

Title:

Two active site divalent ion in the crystal structure of the hammerhead ribozyme bound to a transition state analog-Mn2+

Classification:

RNA

Authors:

Mir, A., Golden, B.L.

Citation:

Two Active Site Divalent Ions in the Crystal Structure of the Hammerhead Ribozyme Bound to a Transition State Analogue.
Biochemistry 55 pp.633 - 636 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.201Å R work:0.247R free:0.277

NDB ID:

5ELX

PDB ID:

5ELX 

Release:

2016-02-24

Title:

S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3

Classification:

HYDROLASE

Authors:

Wong, E.V., Cao, W., Voros, J., Merchant, M., Modis, Y., Hackney, D.D., Montpetit, B., De La Cruz, E.M.

Citation:

Pi Release Limits the Intrinsic and RNA-Stimulated ATPase Cycles of DEAD-Box Protein 5 (Dbp5).
J.Mol.Biol. 428 pp.492 - 508 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.81Å R work:0.174R free:0.208