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As of 25-May-2016 number of released structures: 8217
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3050  Download results as an excel file       Gallery view

NDB ID:

5FJ1

PDB ID:

5FJ1 

Release:

2016-05-25

Title:

Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.166R free:0.182

NDB ID:

5FJ4

PDB ID:

5FJ4 

Release:

2016-05-25

Title:

Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins

Classification:

TRANSCRIPTION

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.198R free:0.236

NDB ID:

5FJC

PDB ID:

5FJC 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.71Å R work:0.2R free:0.24

NDB ID:

5FK1

PDB ID:

5FK1 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.238R free:0.289

NDB ID:

5FK2

PDB ID:

5FK2 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.215R free:0.272

NDB ID:

5FK3

PDB ID:

5FK3 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.206R free:0.267

NDB ID:

5FK4

PDB ID:

5FK4 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.43Å R work:0.189R free:0.248

NDB ID:

5FK5

PDB ID:

5FK5 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.315Å R work:0.199R free:0.248

NDB ID:

5FK6

PDB ID:

5FK6 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.213R free:0.275

NDB ID:

5FKD

PDB ID:

5FKD 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.232R free:0.293

NDB ID:

5FKE

PDB ID:

5FKE 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.246R free:0.305

NDB ID:

5FKF

PDB ID:

5FKF 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.204R free:0.257

NDB ID:

5FKG

PDB ID:

5FKG 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.233R free:0.298

NDB ID:

5FKH

PDB ID:

5FKH 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.23R free:0.277

NDB ID:

5IB7

PDB ID:

5IB7 

Release:

2016-05-25

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Classification:

TRANSLATION

Authors:

Rozov, A., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.99Å R work:0.201R free:0.241

NDB ID:

5IB8

PDB ID:

5IB8 

Release:

2016-05-25

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.13Å R work:0.192R free:0.243

NDB ID:

5IBB

PDB ID:

5IBB 

Release:

2016-05-25

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.96Å R work:0.2R free:0.242

NDB ID:

5J8B

PDB ID:

5J8B 

Release:

2016-05-25

Title:

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Classification:

RIBOSOME

Authors:

Gagnon, M.G., Lin, J., Steitz, T.A.

Citation:

Elongation factor 4 remodels the A-site tRNA on the ribosome
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.191R free:0.26

NDB ID:

5J4D

PDB ID:

5J4D 

Release:

2016-05-18

Title:

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Classification:

RIBOSOME

Authors:

Svidritskiy, E., Madireddy, R., Korostelev, A.A.

Citation:

Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.221R free:0.256

NDB ID:

5FCI

PDB ID:

5FCI 

Release:

2016-05-11

Title:

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Classification:

Ribosome

Authors:

Mailliot, J., Garreau de Loubresse, N., Yusupova, G., Meskauskas, A., Dinman, J.D., Yusupov, M.

Citation:

Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.234R free:0.284

NDB ID:

5FCJ

PDB ID:

5FCJ 

Release:

2016-05-11

Title:

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Classification:

RIBOSOME

Authors:

Mailliot, J., Garreau de Loubresse, N., Yusupova, G., Meskauskas, A., Dinman, J.D., Yusupov, M.

Citation:

Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.234R free:0.29

NDB ID:

4P3S

PDB ID:

4P3S 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin

Classification:

RNA/ANTIBIOTIC

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.219R free:0.264

NDB ID:

4P3T

PDB ID:

4P3T 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site

Classification:

RNA

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.247R free:0.27

NDB ID:

4P3U

PDB ID:

4P3U 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)

Classification:

RNA

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.295R free:0.302

NDB ID:

4P43

PDB ID:

4P43 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 2)

Classification:

RNA

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 2)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.245R free:0.27

NDB ID:

5B43

PDB ID:

5B43 

Release:

2016-05-04

Title:

Crystal structure of Acidaminococcus sp. Cpf1 in complex with crRNA and target DNA

Classification:

HYDROLASE/RNA/DNA

Authors:

Yamano, T., Nishimasu, H., Zetsche, B., Hirano, H., Slaymaker, I.M., Li, Y., Fedorova, I., Nakane, T., Makarova, K.S., Koonin, E.V., Ishitani, R., Zhang, F., Nureki, O.

Citation:

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA
Cell 165 pp.949 - 962 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.22R free:0.257

NDB ID:

5EEU

PDB ID:

5EEU 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 1.31 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.189R free:0.231

NDB ID:

5EEV

PDB ID:

5EEV 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 3.88 MGy

Classification:

RNA-binding protein

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.209R free:0.244

NDB ID:

5EEW

PDB ID:

5EEW 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 6.45 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.208R free:0.243

NDB ID:

5EEX

PDB ID:

5EEX 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 9.02 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.212R free:0.244

NDB ID:

5EEY

PDB ID:

5EEY 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 11.6 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.216R free:0.247

NDB ID:

5EEZ

PDB ID:

5EEZ 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 14.2 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.219R free:0.252

NDB ID:

5EF0

PDB ID:

5EF0 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 16.7 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.224R free:0.256

NDB ID:

5EF1

PDB ID:

5EF1 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 19.3 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.229R free:0.262

NDB ID:

5EF2

PDB ID:

5EF2 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 21.9 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.234R free:0.264

NDB ID:

5EF3

PDB ID:

5EF3 

Release:

2016-05-04

Title:

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 25.0 MGy

Classification:

RNA BINDING PROTEIN

Authors:

Bury, C.S., McGeehan, J.E., Antson, A.A., Carmichael, I., Gerstel, M., Shevtsov, M.B., Garman, E.F.

Citation:

RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol 72 pp.648 - 657 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.98Å R work:0.239R free:0.27

NDB ID:

5JJU

PDB ID:

5JJU 

Release:

2016-05-04

Title:

Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP

Classification:

HYDROLASE/RNA

Authors:

Wang, F., He, Q., Liu, S., Gu, L.

Citation:

Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.312Å R work:0.217R free:0.288

NDB ID:

4XBF

PDB ID:

4XBF 

Release:

2016-04-27

Title:

Structure of LSD1:CoREST in complex with ssRNA

Classification:

Oxidoreductase/Transcription/RNA

Authors:

Luka, Z., Loukachevitch, L.V., Martin, W.J., Wagner, C., Reiter, N.J.

Citation:

Structural basis for RNA-mediated allosteric regulation of lysine specific demethylase-1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.803Å R work:0.201R free:0.226

NDB ID:

5HC9

PDB ID:

5HC9 

Release:

2016-04-27

Title:

Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA

Classification:

TRANSFERASE

Authors:

Yamashita, S., Tomita, K.

Citation:

Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme
Structure pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.214R free:0.263

NDB ID:

5HN2

PDB ID:

5HN2 

Release:

2016-04-27

Title:

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Classification:

RNA

Authors:

Wang, R., Luo, Z., He, K., Delaney, M.O., Chen, D., Sheng, J.

Citation:

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.122R free:0.14

NDB ID:

5HNJ

PDB ID:

5HNJ 

Release:

2016-04-27

Title:

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Classification:

RNA

Authors:

Wang, R., Luo, Z., He, K., Delaney, M.O., Chen, D., Sheng, J.

Citation:

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.24Å R work:0.133R free:0.154

NDB ID:

5HNQ

PDB ID:

5HNQ 

Release:

2016-04-27

Title:

Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex

Classification:

RNA

Authors:

Wang, R., Luo, Z., He, K., Delaney, M.O., Chen, D., Sheng, J.

Citation:

Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.221R free:0.261

NDB ID:

5I9D

PDB ID:

5I9D 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8A2 in complex with its target RNA U8A2

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.596Å R work:0.266R free:0.293

NDB ID:

5I9F

PDB ID:

5I9F 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U10 in complex with its target RNA U10

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.194Å R work:0.25R free:0.299

NDB ID:

5I9G

PDB ID:

5I9G 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8C2 in complex with its target RNA U8C2

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.288Å R work:0.225R free:0.247

NDB ID:

5I9H

PDB ID:

5I9H 

Release:

2016-04-27

Title:

Crystal structure of designed pentatricopeptide repeat protein dPPR-U8G2 in complex with its target RNA U8G2

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Shen, C., Zhang, D., Guan, Z., Liu, Y., Yang, Z., Yang, Y., Wang, X., Wang, Q., Zhang, Q.X., Fan, S., Zou, T., Yin, P.

Citation:

Structure of RNA binding protein with target RNA
Nat Commun pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.504Å R work:0.223R free:0.296

NDB ID:

5ID6

PDB ID:

5ID6 

Release:

2016-04-27

Title:

Structure of Cpf1/RNA Complex

Classification:

HYDROLASE

Authors:

Dong, D., Ren, K., Qiu, X., Zheng, J., Guo, M., Guan, X., Liu, H., Li, N., Zhang, B., Yang, D., Ma, C., Wang, S., Wu, D., Ma, Y., Fan, S., Wang, J., Gao, N., Huang, Z.

Citation:

The crystal structure of Cpf1 in complex with CRISPR RNA
Nature 532 pp.522 - 526 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.382Å R work:0.202R free:0.26

NDB ID:

5IWA

PDB ID:

5IWA 

Release:

2016-04-27

Title:

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Classification:

TRANSCRIPTION

Authors:

Fabbretti, A., Schedlbauer, A., Brandi, L., Kaminishi, T., Giuliodori, A.M., Garofalo, R., Ochoa-Lizarralde, B., Takemoto, C., Yokoyama, S., Connell, S.R., Gualerzi, C.O., Fucini, P.

Citation:

Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding.
Proc.Natl.Acad.Sci.USA 113 pp.E2286 - E2295 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.166R free:0.217

NDB ID:

5J4B

PDB ID:

5J4B 

Release:

2016-04-27

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Soll, D., Steitz, T.A., Polikanov, Y.S.

Citation:

Insights into RNA binding by the anticancer drug cisplatin from the crystal structure of cisplatin-modified ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.217R free:0.263

NDB ID:

5J4C

PDB ID:

5J4C 

Release:

2016-04-27

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Soll, D., Steitz, T.A., Polikanov, Y.S.

Citation:

Insights into RNA binding by the anticancer drug cisplatin from the crystal structure of cisplatin-modified ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.219R free:0.268