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As of 29-Oct-2014 number of released structures: 7507
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2949   (Gallery view)

NDB ID:

NA2947

PDB ID:

4PR6 

Release:

2014-10-29

Title:

A Second Look at the HDV Ribozyme Structure and Dynamics.

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kapral, G.J., Jain, S., Noeske, J., Doudna, J.A., Richardson, D.C., Richardson, J.S.

Citation:

New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.198R free:0.24

NDB ID:

NA2948

PDB ID:

4PRF 

Release:

2014-10-29

Title:

A Second Look at the HDV Ribozyme Structure and Dynamics.

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kapral, G.J., Jain, S., Noeske, J., Doudna, J.A., Richardson, D.C., Richardson, J.S.

Citation:

New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
Nucleic Acids Res. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.395Å R work:0.197R free:0.251

NDB ID:

2MTJ

PDB ID:

2MTJ 

Release:

2014-10-22

Title:

NMR structure of the III-IV-V three-way junction from the VS ribozyme

Classification:

RNA

Authors:

Bonneau, E., Legault, P.

Citation:

Nuclear Magnetic Resonance Structure of the III-IV-V Three-Way Junction from the Varkud Satellite Ribozyme and Identification of Magnesium-Binding Sites Using Paramagnetic Relaxation Enhancement.
Biochemistry 53 pp.6264 - 6275 2014

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_52058.1 

Eq. Class Rep:

2MTJ

NDB ID:

2MTK

PDB ID:

2MTK 

Release:

2014-10-22

Title:

NMR structure of the III-IV-V three-way junction from the VS ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement

Classification:

RNA

Authors:

Bonneau, E., Legault, P.

Citation:

Nuclear Magnetic Resonance Structure of the III-IV-V Three-Way Junction from the Varkud Satellite Ribozyme and Identification of Magnesium-Binding Sites Using Paramagnetic Relaxation Enhancement.
Biochemistry 53 pp.6264 - 6275 2014

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_52058.1 

Eq. Class Rep:

2MTJ

NDB ID:

NA3225

PDB ID:

4UKP 

Release:

2014-10-22

Title:

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.202R free:0.254

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3226

PDB ID:

4UKQ 

Release:

2014-10-22

Title:

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.202R free:0.254

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3227

PDB ID:

4UKR 

Release:

2014-10-22

Title:

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.202R free:0.254

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3228

PDB ID:

4UKS 

Release:

2014-10-22

Title:

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.202R free:0.254

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3229

PDB ID:

4UKU 

Release:

2014-10-22

Title:

Crystal structure of Edeine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.203R free:0.252

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3230

PDB ID:

4UKV 

Release:

2014-10-22

Title:

Crystal structure of Edeine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.203R free:0.252

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3231

PDB ID:

4UKW 

Release:

2014-10-22

Title:

Crystal structure of Edeine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.203R free:0.252

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3232

PDB ID:

4UKX 

Release:

2014-10-22

Title:

Crystal structure of Edeine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.203R free:0.252

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3233

PDB ID:

4UKZ 

Release:

2014-10-22

Title:

Crystal structure of Geneticin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.189R free:0.266

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3234

PDB ID:

4UL0 

Release:

2014-10-22

Title:

Crystal structure of Geneticin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.189R free:0.266

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3235

PDB ID:

4UL1 

Release:

2014-10-22

Title:

Crystal structure of Geneticin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.189R free:0.266

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3236

PDB ID:

4UL2 

Release:

2014-10-22

Title:

Crystal structure of Geneticin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.189R free:0.266

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3237

PDB ID:

4UL4 

Release:

2014-10-22

Title:

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.208R free:0.254

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3238

PDB ID:

4UL5 

Release:

2014-10-22

Title:

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.208R free:0.254

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3239

PDB ID:

4UL6 

Release:

2014-10-22

Title:

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.208R free:0.254

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3240

PDB ID:

4UL7 

Release:

2014-10-22

Title:

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.208R free:0.254

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3241

PDB ID:

4UL9 

Release:

2014-10-22

Title:

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.207R free:0.257

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3242

PDB ID:

4ULA 

Release:

2014-10-22

Title:

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.207R free:0.257

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3243

PDB ID:

4ULB 

Release:

2014-10-22

Title:

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.207R free:0.257

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3244

PDB ID:

4ULC 

Release:

2014-10-22

Title:

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.207R free:0.257

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3245

PDB ID:

4ULE 

Release:

2014-10-22

Title:

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.193R free:0.245

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3246

PDB ID:

4ULF 

Release:

2014-10-22

Title:

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.193R free:0.245

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3247

PDB ID:

4ULG 

Release:

2014-10-22

Title:

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.193R free:0.245

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3248

PDB ID:

4ULH 

Release:

2014-10-22

Title:

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.193R free:0.245

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3249

PDB ID:

4ULJ 

Release:

2014-10-22

Title:

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.252

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

NA3250

PDB ID:

4ULK 

Release:

2014-10-22

Title:

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.252

Equivalence Class: 

NR_all_98197.1 

Eq. Class Rep:

3U5H

NDB ID:

NA3251

PDB ID:

4ULM 

Release:

2014-10-22

Title:

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Garreau De Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M.

Citation:

Structural Basis for the Inhibition of the Eukaryotic Ribosome.
Nature 513 pp.517 - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.202R free:0.252

Equivalence Class: 

NR_all_05828.1 

Eq. Class Rep:

3U5F

NDB ID:

2MFD

PDB ID:

2MFD 

Release:

2014-10-15

Title:

The Solution Structure of a cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir404/03

Classification:

RNA

Authors:

Ihle, Y., Zell, R., Gorlach, M.

Citation:

The Solution Structure of a cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir 404/03
To be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_56845.1 

Eq. Class Rep:

2MFD

NDB ID:

NA3189

PDB ID:

4RB5 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.237R free:0.277

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3190

PDB ID:

4RB6 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
To be Published pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.237R free:0.277

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3191

PDB ID:

4RB7 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.237R free:0.277

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3192

PDB ID:

4RB8 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.237R free:0.277

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3193

PDB ID:

4RB9 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.225R free:0.273

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3194

PDB ID:

4RBA 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.225R free:0.273

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3195

PDB ID:

4RBB 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.225R free:0.273

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3196

PDB ID:

4RBC 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.225R free:0.273

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3197

PDB ID:

4RBD 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.215R free:0.262

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3198

PDB ID:

4RBE 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.215R free:0.262

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3199

PDB ID:

4RBF 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.215R free:0.262

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3200

PDB ID:

4RBG 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Osterman, I.A., Szal, T., Tashlitsky, V.N., Serebryakova, M.V., Kusochek, P., Bulkley, D., Malanicheva, I.A., Efimenko, T.A., Efremenkova, O.V., Konevega, A.L., Shaw, K.J., Bogdanov, A.A., Rodnina, M.V., Dontsova, O.A., Mankin, A.S., Steitz, T.A., Sergiev, P.V.

Citation:

Amicoumacin A inhibits translation by stabilizing mRNA interaction with the ribosome
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.215R free:0.262

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3201

PDB ID:

4RBH 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Szal, T., Jiang, F., Gupta, P., Matsuda, R., Shiozuka, M., Steitz, T.A., Vazquez-Laslop, Nora, Mankin, A.S.

Citation:

Negamycin interferes with decoding and translocation by simultaneous interaction with rRNA and tRNA
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.256

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3202

PDB ID:

4RBI 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Szal, T., Jiang, F., Gupta, P., Matsuda, R., Shiozuka, M., Steitz, T.A., Vazquez-Laslop, Nora, Mankin, A.S.

Citation:

Negamycin interferes with decoding and translocation by simultaneous interaction with rRNA and tRNA
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.256

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3203

PDB ID:

4RBJ 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Szal, T., Jiang, F., Gupta, P., Matsuda, R., Shiozuka, M., Steitz, T.A., Vazquez-Laslop, Nora, Mankin, A.S.

Citation:

Negamycin interferes with decoding and translocation by simultaneous interaction with rRNA and tRNA
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.256

Equivalence Class: 

NR_all_42982.33 

Eq. Class Rep:

1FJG

NDB ID:

NA3204

PDB ID:

4RBK 

Release:

2014-10-15

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Polikanov, Y.S., Szal, T., Jiang, F., Gupta, P., Matsuda, R., Shiozuka, M., Steitz, T.A., Vazquez-Laslop, Nora, Mankin, A.S.

Citation:

Negamycin interferes with decoding and translocation by simultaneous interaction with rRNA and tRNA
pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.209R free:0.256

Equivalence Class: 

NR_all_86444.22 

Eq. Class Rep:

4QCN

NDB ID:

NA3057

PDB ID:

4QM6 

Release:

2014-10-08

Title:

Structure of bacterial polynucleotide kinase bound to GTP and RNA

Classification:

TRANSFERASE/RNA

Authors:

Das, U., Wang, L.K., Smith, P., Munir, A., Shuman, S.

Citation:

Structures of bacterial polynucleotide kinase in a Michaelis complex with NTPMg2+ and 5'-OH RNA and a mixed substrate-product complex with NTPMg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol. pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.153R free:0.174

Equivalence Class: 

NR_all_18022.1 

Eq. Class Rep:

4QM6

NDB ID:

2MNC

PDB ID:

2MNC 

Release:

2014-10-01

Title:

oligonucleotide model of miR-21 pre-element

Classification:

RNA

Authors:

Chirayil, S., Wu, Q., Amezcua, C., Luebke, K.J.

Citation:

NMR Characterization of an Oligonucleotide Model of the MiR-21 Pre-Element.
Plos One 9 pp.e108231 - e108231 2014

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_26675.1 

Eq. Class Rep:

2MNC