A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Sep-2014 number of released structures: 7399
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2888   (Gallery view)

NDB ID:

2MQV

PDB ID:

2MQV 

Release:

2014-09-17

Title:

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein

Classification:

VIRAL PROTEIN/RNA

Authors:

D'Souza, V.

Citation:

A structure-based mechanism for tRNA and retroviral RNA remodeling during primer annealing
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MS0

PDB ID:

2MS0 

Release:

2014-09-17

Title:

Solution NMR structure pf tRNApro:MLV-Nucleocapsid (1:2) Complex

Classification:

VIRAL PROTEIN/RNA

Authors:

D'Souza, V.

Citation:

A structure-based mechanism for tRNA and retroviral RNA remodeling during primer
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

NA3143

PDB ID:

4R3I 

Release:

2014-09-17

Title:

The crystal structure of an RNA complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Xu, C., Liu, K., Tempel, W., Li, Y., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

Citation:

Structural Basis for selective binding of m6A RNA by the YTHDC1 YTH domain
To be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.203R free:0.263

NDB ID:

2MQT

PDB ID:

2MQT 

Release:

2014-09-10

Title:

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome

Classification:

RNA

Authors:

D'Souza, V.

Citation:

A Structure based mechanism for tRNA and retroviral RNA remodeling during primer annealing
To be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_04415.1 

Eq. Class Rep:

2MQT

NDB ID:

2MS1

PDB ID:

2MS1 

Release:

2014-09-10

Title:

Solution NMR structure of tRNApro:MLV Nucleocapsid Protein (1:1) Complex

Classification:

VIRAL PROTEIN/RNA

Authors:

D'Souza, V.

Citation:

A structure-based mechanism for tRNA and retroviral RNA remodeling during primer
To be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_90932.1 

Eq. Class Rep:

2MS1

NDB ID:

NA2778

PDB ID:

4NL3 

Release:

2014-09-10

Title:

Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kovach, A.R., Hoff, K.E., Canty, J.T., Orans, J., Brennan, R.G.

Citation:

Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes.
Rna pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.221R free:0.282

Equivalence Class: 

NR_all_25221.1 

Eq. Class Rep:

4NL3

NDB ID:

NA2789

PDB ID:

4NIA 

Release:

2014-09-10

Title:

Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints

Classification:

VIRUS/RNA

Authors:

Larson, S.B., Day, J.S., McPherson, A.

Citation:

Satellite tobacco mosaic virus refined to 1.4 AA resolution
Acta Crystallogr.,Sect.D pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.82Å R work:0.123R free:0.156

Equivalence Class: 

NR_all_91301.3 

Eq. Class Rep:

1RRR

NDB ID:

NA2857

PDB ID:

4O8J 

Release:

2014-09-10

Title:

Crystal structure of RtcA, the RNA 3'-terminal phosphate cyclase from Pyrococcus horikoshii, in complex with rACAAA3'phosphate and adenine.

Classification:

Ligase/RNA

Authors:

Desai, K.K., Bingman, C.A., Cheng, C.L., Phillips, G.N., Raines, R.T.

Citation:

Structure of RNA 3'-phosphate cyclase bound to substrate RNA.
Rna pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.04Å R work:0.158R free:0.198

Equivalence Class: 

NR_all_64813.1 

Eq. Class Rep:

4O8J

NDB ID:

NA2915

PDB ID:

4OQ8 

Release:

2014-09-10

Title:

Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints

Classification:

VIRUS/RNA

Authors:

Larson, S.B., Day, J.S., McPherson, A.

Citation:

Satellite tobacco mosaic virus refined to 1.4 AA resolution
Acta Crystallogr.,Sect.D pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.277R free:0.279

Equivalence Class: 

NR_all_91301.3 

Eq. Class Rep:

1RRR

NDB ID:

NA2916

PDB ID:

4OQ9 

Release:

2014-09-10

Title:

Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints

Classification:

VIRUS/RNA

Authors:

Larson, S.B., Day, J.S., McPherson, A.

Citation:

Satellite tobacco mosaic virus refined to 1.4 AA resolution
Acta Crystallogr.,Sect.D pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:1.45Å R work:0.216R free:0.249

Equivalence Class: 

NR_all_91301.3 

Eq. Class Rep:

1RRR

NDB ID:

4CIO

PDB ID:

4CIO 

Release:

2014-09-03

Title:

RRM domain from C. elegans SUP-12 bound to GGUGUGC RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Amrane, S., Rebora, K., Zniber, I., Dupuy, D., Mackereth, C.D.

Citation:

Backbone-Independent Nucleic Acid Binding by Splicing Factor Sup-12 Reveals Key Aspects of Molecular Recognition
Nat.Commun. 5 pp.4595 - 2014

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_29280.1 

Eq. Class Rep:

4CIO

NDB ID:

NA3053

PDB ID:

4QJD 

Release:

2014-09-03

Title:

Crystal Structure of Twister with the Nucleotide 5'- to the Cleavage Site Disordered at 3.1 A Resolution

Classification:

RNA

Authors:

Eiler, D., Wang, J., Steitz, T.A.

Citation:

Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.19R free:0.287

Equivalence Class: 

NR_all_87049.1 

Eq. Class Rep:

4QJD

NDB ID:

NA3054

PDB ID:

4QJH 

Release:

2014-09-03

Title:

Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site Ordered at 4.1 A Resolution

Classification:

RNA

Authors:

Eiler, D., Wang, J., Steitz, T.A.

Citation:

Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.88Å R work:0.185R free:0.232

Equivalence Class: 

NR_all_44266.1 

Eq. Class Rep:

4QJH

NDB ID:

NA3085

PDB ID:

4QYZ 

Release:

2014-09-03

Title:

Crystal structure of a CRISPR RNA-guided surveillance complex, Cascade, bound to a ssDNA target

Classification:

IMMUNE SYSTEM/DNA/RNA

Authors:

Mulepati, S., Heroux, A., Bailey, S.

Citation:

Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target.
Science pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.0303Å R work:0.223R free:0.267

Equivalence Class: 

NR_all_18946.1 

Eq. Class Rep:

4QYZ

NDB ID:

NA3127

PDB ID:

4QQB 

Release:

2014-09-03

Title:

Structural basis for the assembly of the SXL-UNR translation regulatory complex

Classification:

TRANLATION/RNA

Authors:

Hennig, J., Militti, C., Popowicz, G.M., Wang, I., Sonntag, M., Geerlof, A., Gabel, F., Gebauer, F., Sattler, M.

Citation:

Structural basis for the assembly of the Sxl-Unr translation regulatory complex
Nature pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.198R free:0.235

Equivalence Class: 

NR_all_53334.1 

Eq. Class Rep:

4QQB

NDB ID:

NA2995

PDB ID:

4QCN 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA- substrates in the A and P sites. This entry contains the 50S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.222R free:0.263

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA2996

PDB ID:

4QCM 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. This entry contains the 30S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.222R free:0.263

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA2997

PDB ID:

4QCO 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. This entry contains the 30S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.222R free:0.263

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3006

PDB ID:

4QCP 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. This entry contains the 50S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.222R free:0.263

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3007

PDB ID:

4QCQ 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. This entry contains the 50S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.232R free:0.279

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3008

PDB ID:

4QCS 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. This entry contains the 30S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.232R free:0.279

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3009

PDB ID:

4QCT 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. This entry contains the 50S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.232R free:0.279

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3010

PDB ID:

4QCR 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. This entry contains the 50S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.232R free:0.279

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3011

PDB ID:

4QCU 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 30S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.23R free:0.286

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3012

PDB ID:

4QCW 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 30S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.23R free:0.286

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3013

PDB ID:

4QCV 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 50S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.23R free:0.286

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3014

PDB ID:

4QCX 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 50S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.23R free:0.286

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3015

PDB ID:

4QCY 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 30S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.28

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3016

PDB ID:

4QD0 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 30S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.28

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3019

PDB ID:

4QCZ 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 50S subunit of the first 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.28

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3020

PDB ID:

4QD1 

Release:

2014-08-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. This entry contains the 50S subunit of the second 70S ribosome in the ASU.

Classification:

RIBOSOME

Authors:

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

Citation:

A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
Nat.Struct.Mol.Biol. 21 pp.787 - 793 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.233R free:0.28

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3124

PDB ID:

1VY8 

Release:

2014-08-20

Title:

Crystal structure of the E. coli CRISPR RNA-guided surveillance complex, Cascade

Classification:

Hydrolase/RNA

Authors:

Jackson, R.N., Golden, S.M., van Erp, P.B., Carter, J., Westra, E.R., Brouns, S.J., van der Oost, J., Terwilliger, T.C., Read, R.J., Wiedenheft, B.

Citation:

Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli.
Science pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.24Å R work:0.233R free:0.267

Equivalence Class: 

NR_all_67832.1 

Eq. Class Rep:

1VY8

NDB ID:

NA3125

PDB ID:

1VY9 

Release:

2014-08-20

Title:

Crystal structure of the E. coli CRISPR RNA-guided surveillance complex, Cascade

Classification:

Hydrolase/RNA

Authors:

Jackson, R.N., Golden, S.M., van Erp, P.B., Carter, J., Westra, E.R., Brouns, S.J., van der Oost, J., Terwilliger, T.C., Read, R.J., Wiedenheft, B.

Citation:

Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli.
Science pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.24Å R work:0.233R free:0.267

Equivalence Class: 

NR_all_56468.1 

Eq. Class Rep:

1VY9

NDB ID:

2MGZ

PDB ID:

2MGZ 

Release:

2014-08-13

Title:

Solution structure of RBFOX family ASD-1 RRM and SUP-12 RRM in ternary complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kuwasako, K., Takahashi, M., Unzai, S., Tsuda, K., Yoshikawa, S., He, F., Kobayashi, N., Guntert, P., Shirouzu, M., Ito, T., Tanaka, A., Yokoyama, S., Hagiwara, M., Kuroyanagi, H., Muto, Y.

Citation:

N/a
To be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_74365.1 

Eq. Class Rep:

2MGZ

NDB ID:

2RU3

PDB ID:

2RU3 

Release:

2014-08-13

Title:

Solution structure of c.elegans SUP-12 RRM in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kuwasako, K., Takahashi, M., Unzai, S., Tsuda, K., Yoshikawa, S., He, F., Kobayashi, N., Guntert, P., Shirouzu, M., Ito, T., Tanaka, A., Yokoyama, S., Hagiwara, M., Kuroyanagi, H., Muto, Y.

Citation:

N/a
To be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_71732.1 

Eq. Class Rep:

2RU3

NDB ID:

NA3036

PDB ID:

4QLN 

Release:

2014-08-13

Title:

structure of ydao riboswitch binding with c-di-dAMP

Classification:

rna

Authors:

Ren, A., Patel, D.J.

Citation:

c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets.
Nat.Chem.Biol. 10 pp.780 - 786 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.216R free:0.289

Equivalence Class: 

NR_all_48881.1 

Eq. Class Rep:

4QLM

NDB ID:

NA3037

PDB ID:

4QLM 

Release:

2014-08-13

Title:

ydao riboswitch binding to c-di-AMP

Classification:

RNA

Authors:

Ren, A., Patel, D.J.

Citation:

c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets.
Nat.Chem.Biol. 10 pp.780 - 786 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.721Å R work:0.212R free:0.244

Equivalence Class: 

NR_all_48881.1 

Eq. Class Rep:

4QLM

NDB ID:

NA3066

PDB ID:

4QU6 

Release:

2014-08-13

Title:

Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution

Classification:

RNA Binding Protein/RNA

Authors:

Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)

Citation:

Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.182R free:0.246

Equivalence Class: 

NR_all_62587.1 

Eq. Class Rep:

4QU6

NDB ID:

NA3067

PDB ID:

4QU7 

Release:

2014-08-13

Title:

Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution

Classification:

RNA Binding Protein/RNA

Authors:

Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)

Citation:

Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution
To be published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.191R free:0.253

Equivalence Class: 

NR_all_25546.1 

Eq. Class Rep:

4QU7

NDB ID:

NA3103

PDB ID:

1VY0 

Release:

2014-08-13

Title:

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.68Å R work:0.212R free:0.271

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3104

PDB ID:

1VY1 

Release:

2014-08-13

Title:

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.68Å R work:0.212R free:0.271

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA3105

PDB ID:

1VY2 

Release:

2014-08-13

Title:

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.68Å R work:0.212R free:0.271

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA3106

PDB ID:

1VY3 

Release:

2014-08-13

Title:

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.68Å R work:0.212R free:0.271

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA2560

PDB ID:

4KWZ 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.44Å R work:0.243R free:0.284

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA2561

PDB ID:

4KX0 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.44Å R work:0.243R free:0.284

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA2562

PDB ID:

4KX1 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.44Å R work:0.243R free:0.284

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA2563

PDB ID:

4KX2 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.44Å R work:0.243R free:0.284

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA2572

PDB ID:

1VVL 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.22Å R work:0.229R free:0.259

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG

NDB ID:

NA2573

PDB ID:

1VVM 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.22Å R work:0.229R free:0.259

Equivalence Class: 

NR_all_86444.20 

Eq. Class Rep:

4QCN

NDB ID:

NA2574

PDB ID:

1VVN 

Release:

2014-08-06

Title:

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Classification:

RIBOSOME

Authors:

Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA pp. - 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.22Å R work:0.229R free:0.259

Equivalence Class: 

NR_all_42982.31 

Eq. Class Rep:

1FJG