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As of 17-Oct-2018 number of released structures: 9817
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4790  Download results as an excel file       Gallery view

NDB ID:

5YZE

PDB ID:

5YZE 

Release:

2018-10-17

Title:

Crystal structure of the [Co2+-(chromomycin A3)2]-d(CCG)3 complex

Classification:

ANTIBIOTICS/DNA

Authors:

Chen, Y.W., Satange, R., Wu, P.C., Jhan, C.R., Chang, C.K., Chung, K.R., Waring, M.J., Lin, S.W., Hsieh, L.C., Hou, M.H.

Citation:

CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex
Int J Mol Sci 19 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.87Å R work:0.194R free:0.252

NDB ID:

6G63

PDB ID:

6G63 

Release:

2018-10-03

Title:

RNase E in complex with sRNA RrpA

Classification:

RNA BINDING PROTEIN

Authors:

Bandyra, K.J., Wandzik, J.M., Luisi, B.F.

Citation:

Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E.
Mol. Cell pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.95Å R work:0.274R free:0.296

NDB ID:

5VPO

PDB ID:

5VPO 

Release:

2018-09-26

Title:

The 70S P-site ASL SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.34Å R work:0.237R free:0.266

NDB ID:

5VPP

PDB ID:

5VPP 

Release:

2018-09-26

Title:

The 70S P-site tRNA SufA6 complex

Classification:

RIBOSOME

Authors:

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

Citation:

Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.9Å

NDB ID:

6DU4

PDB ID:

6DU4 

Release:

2018-09-26

Title:

Crystal structure of hMettl16 catalytic domain in complex with MAT2A 3'UTR hairpin 1

Classification:

Transferase/RNA

Authors:

Doxtader, K.A., Wang, P., Scarborough, A.M., Seo, D., Conrad, N.K., Nam, Y.

Citation:

Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor.
Mol. Cell 71 pp.1001 - 1011.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.151R free:0.172

NDB ID:

6DU5

PDB ID:

6DU5 

Release:

2018-09-26

Title:

Crystal structure of hMettl16 catalytic domain in complex with MAT2A 3'UTR hairpin 6

Classification:

Transferase/RNA

Authors:

Doxtader, K.A., Wang, P., Scarborough, A.M., Seo, D., Conrad, N.K., Nam, Y.

Citation:

Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor.
Mol. Cell 71 pp.1001 - 1011.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.006Å R work:0.247R free:0.264

NDB ID:

6FFR

PDB ID:

6FFR 

Release:

2018-09-26

Title:

DNA-RNA Hybrid Quadruplex with Flipped Tetrad

Classification:

DNA-RNA HYBRID

Authors:

Haase, L., Dickerhoff, J., Weisz, K.

Citation:

DNA-RNA Hybrid Quadruplexes Reveal Interactions that Favor RNA Parallel Topologies.
Chemistry pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6H9H

PDB ID:

6H9H 

Release:

2018-09-26

Title:

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease

Classification:

RNA BINDING PROTEIN

Authors:

Oezkan, A., Pausch, P., Linden, A., Wulf, A., Schuele, K., Heider, J., Urlaub, H., Heimerl, T., Bange, G., Randau, L.

Citation:

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.212R free:0.237

NDB ID:

6H9I

PDB ID:

6H9I 

Release:

2018-09-26

Title:

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease

Classification:

RNA BINDING PROTEIN

Authors:

Oezkan, A., Pausch, P., Linden, A., Wulf, A., Schuele, K., Heider, J., Urlaub, H., Heimerl, T., Bange, G., Randau, L.

Citation:

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.29Å R work:0.223R free:0.254

NDB ID:

6D2Z

PDB ID:

6D2Z 

Release:

2018-09-05

Title:

Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant

Classification:

HYDROLASE/RNA

Authors:

Nomura, Y., Roston, D., Montemayor, E.J., Cui, Q., Butcher, S.E.

Citation:

Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.18Å R work:0.145R free:0.173

Equivalence Class: 

NR_all_88935.1 

Eq. Class Rep:

6D2Z

NDB ID:

6D30

PDB ID:

6D30 

Release:

2018-09-05

Title:

Structure of human Usb1 with uridine-uridine, inactive H208Q mutant

Classification:

HYDROLASE/RNA

Authors:

Nomura, Y., Roston, D., Montemayor, E.J., Cui, Q., Butcher, S.E.

Citation:

Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.17Å R work:0.149R free:0.171

Equivalence Class: 

NR_all_21736.5 

Eq. Class Rep:

6D30

NDB ID:

6DN1

PDB ID:

6DN1 

Release:

2018-09-05

Title:

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA

Classification:

RNA

Authors:

Vicens, Q., Mondragon, E., Reyes, F.E., Coish, P., Aristoff, P., Berman, J., Kaur, H., Kells, K.W., Wickens, P., Wilson, J., Gadwood, R.C., Schostarez, H.J., Suto, R.K., Blount, K.F., Batey, R.T.

Citation:

Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.223R free:0.241

Equivalence Class: 

NR_all_75133.1 

Eq. Class Rep:

6DN2

NDB ID:

6DN2

PDB ID:

6DN2 

Release:

2018-09-05

Title:

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA

Classification:

RNA

Authors:

Vicens, Q., Mondragon, E., Reyes, F.E., Coish, P., Aristoff, P., Berman, J., Kaur, H., Kells, K.W., Wickens, P., Wilson, J., Gadwood, R.C., Schostarez, H.J., Suto, R.K., Blount, K.F., Batey, R.T.

Citation:

Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.88Å R work:0.199R free:0.256

Equivalence Class: 

NR_all_75133.1 

Eq. Class Rep:

6DN2

NDB ID:

6DN3

PDB ID:

6DN3 

Release:

2018-09-05

Title:

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA

Classification:

RNA

Authors:

Vicens, Q., Mondragon, E., Reyes, F.E., Coish, P., Aristoff, P., Berman, J., Kaur, H., Kells, K.W., Wickens, P., Wilson, J., Gadwood, R.C., Schostarez, H.J., Suto, R.K., Blount, K.F., Batey, R.T.

Citation:

Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.193R free:0.229

Equivalence Class: 

NR_all_75133.1 

Eq. Class Rep:

6DN2

NDB ID:

6DUQ

PDB ID:

6DUQ 

Release:

2018-09-05

Title:

Structure of a Rho-NusG KOW domain complex

Classification:

TRANSCRIPTION/RNA

Authors:

Lawson, M.R., Ma, W., Bellecourt, M.J., Artsimovitch, I., Martin, A., Landick, R., Schulten, K., Berger, J.M.

Citation:

Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.
Mol. Cell 71 pp.911 - 922.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.287R free:0.3

Equivalence Class: 

NR_all_47149.1 

Eq. Class Rep:

6DUQ

NDB ID:

6DUQ

PDB ID:

6DUQ 

Release:

2018-09-05

Title:

Structure of a Rho-NusG KOW domain complex

Classification:

TRANSCRIPTION/RNA

Authors:

Lawson, M.R., Ma, W., Bellecourt, M.J., Artsimovitch, I., Martin, A., Landick, R., Schulten, K., Berger, J.M.

Citation:

Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.
Mol. Cell 71 pp.911 - 922.e4 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.287R free:0.3

Equivalence Class: 

NR_all_82725.1 

Eq. Class Rep:

6DUQ

NDB ID:

6FQR

PDB ID:

6FQR 

Release:

2018-09-05

Title:

Crystal structure of IMP3 RRM12 in complex with RNA (CCCC)

Classification:

RNA BINDING PROTEIN

Authors:

Jia, M., Gut, H., Chao, J.A.

Citation:

Structural basis of IMP3 RRM12 recognition of RNA.
RNA pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.166R free:0.229

Equivalence Class: 

NR_all_19855.1 

Eq. Class Rep:

6FQR

NDB ID:

6GX6

PDB ID:

6GX6 

Release:

2018-09-05

Title:

Crystal structure of IMP3 RRM12 in complex with RNA (ACAC)

Classification:

RNA BINDING PROTEIN

Authors:

Jia, M., Gut, H., Chao, J.A.

Citation:

Structural basis of IMP3 RRM12 recognition of RNA.
RNA pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.18R free:0.235

Equivalence Class: 

NR_all_98524.1 

Eq. Class Rep:

6GX6

NDB ID:

6CVO

PDB ID:

6CVO 

Release:

2018-08-29

Title:

Human Aprataxin (Aptx) bound to nicked RNA-DNA, AMP and Zn product complex

Classification:

HYDROLASE/DNA/RNA

Authors:

Tumbale, P., Schellenberg, M.J., Mueller, G.A., Fairweather, E., Watson, M., Little, J.N., Krahn, J., Waddell, I., London, R.E., Williams, R.S.

Citation:

Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease.
EMBO J. 37 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.183R free:0.222

NDB ID:

6CXZ

PDB ID:

6CXZ 

Release:

2018-08-29

Title:

RNA octamer containing 2'-F, 4'-Calpha-Me U.

Classification:

RNA

Authors:

Harp, J.M., Guenther, D.C., Bisbe, A., Perkins, L., Matsuda, S., Bommineni, G.R., Zlatev, I., Foster, D.J., Taneja, N., Charisse, K., Maier, M.A., Rajeev, K.G., Manoharan, M., Egli, M.

Citation:

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res. 46 pp.8090 - 8104 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.186R free:0.215

Equivalence Class: 

NR_all_86375.1 

Eq. Class Rep:

6CXZ

NDB ID:

6CY0

PDB ID:

6CY0 

Release:

2018-08-29

Title:

RNA octamer containing 2'-F, 4'-Cbeta-OMe U.

Classification:

RNA

Authors:

Harp, J.M., Guenther, D.C., Bisbe, A., Perkins, L., Matsuda, S., Bommineni, G.R., Zlatev, I., Foster, D.J., Taneja, N., Charisse, K., Maier, M.A., Rajeev, K.G., Manoharan, M., Egli, M.

Citation:

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res. 46 pp.8090 - 8104 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.398Å R work:0.202R free:0.242

Equivalence Class: 

NR_all_73564.1 

Eq. Class Rep:

6CY4

NDB ID:

6CY2

PDB ID:

6CY2 

Release:

2018-08-29

Title:

RNA octamer containing 2'-OMe, 4'Calpha-OMe U.

Classification:

RNA

Authors:

Harp, J.M., Guenther, D.C., Bisbe, A., Perkins, L., Matsuda, S., Bommineni, G.R., Zlatev, I., Foster, D.J., Taneja, N., Charisse, K., Maier, M.A., Rajeev, K.G., Manoharan, M., Egli, M.

Citation:

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res. 46 pp.8090 - 8104 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.184R free:0.205

Equivalence Class: 

NR_all_31969.1 

Eq. Class Rep:

6CY2

NDB ID:

6CY4

PDB ID:

6CY4 

Release:

2018-08-29

Title:

RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.

Classification:

RNA

Authors:

Harp, J.M., Guenther, D.C., Bisbe, A., Perkins, L., Matsuda, S., Bommineni, G.R., Zlatev, I., Foster, D.J., Taneja, N., Charisse, K., Maier, M.A., Rajeev, K.G., Manoharan, M., Egli, M.

Citation:

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res. 46 pp.8090 - 8104 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.851Å R work:0.226R free:0.231

Equivalence Class: 

NR_all_07963.1 

Eq. Class Rep:

6CY4

NDB ID:

6CY4

PDB ID:

6CY4 

Release:

2018-08-29

Title:

RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.

Classification:

RNA

Authors:

Harp, J.M., Guenther, D.C., Bisbe, A., Perkins, L., Matsuda, S., Bommineni, G.R., Zlatev, I., Foster, D.J., Taneja, N., Charisse, K., Maier, M.A., Rajeev, K.G., Manoharan, M., Egli, M.

Citation:

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res. 46 pp.8090 - 8104 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.851Å R work:0.226R free:0.231

Equivalence Class: 

NR_all_44426.1 

Eq. Class Rep:

6CY4

NDB ID:

6CY4

PDB ID:

6CY4 

Release:

2018-08-29

Title:

RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.

Classification:

RNA

Authors:

Harp, J.M., Guenther, D.C., Bisbe, A., Perkins, L., Matsuda, S., Bommineni, G.R., Zlatev, I., Foster, D.J., Taneja, N., Charisse, K., Maier, M.A., Rajeev, K.G., Manoharan, M., Egli, M.

Citation:

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.
Nucleic Acids Res. 46 pp.8090 - 8104 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.851Å R work:0.226R free:0.231

Equivalence Class: 

NR_all_73564.1 

Eq. Class Rep:

6CY4

NDB ID:

6DOI

PDB ID:

6DOI 

Release:

2018-08-22

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid (1.54 Angstrom wavelength): Soak in 0.5 mM EGTA and 200 mM K+ at 21 C

Classification:

HYDROLASE/RNA/DNA

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.948Å R work:0.146R free:0.195

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOI

PDB ID:

6DOI 

Release:

2018-08-22

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid (1.54 Angstrom wavelength): Soak in 0.5 mM EGTA and 200 mM K+ at 21 C

Classification:

HYDROLASE/RNA/DNA

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.948Å R work:0.146R free:0.195

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6GYV

PDB ID:

6GYV 

Release:

2018-08-22

Title:

Lariat-capping ribozyme (circular permutation form)

Classification:

RNA

Authors:

Meyer, M., Nielsen, H., Olieric, V., Roblin, P., Johansen, S.D., Westhof, E., Masquida, B.

Citation:

Speciation of a group I intron into a lariat capping ribozyme.
Proc. Natl. Acad. Sci. U.S.A. 111 pp.7659 - 7664 2014

Experiment:

SOLUTION SCATTERING Resolution:2.50004Å R work:0.198R free:0.244

Equivalence Class: 

NR_all_57460.2 

Eq. Class Rep:

4P95

NDB ID:

6GYV

PDB ID:

6GYV 

Release:

2018-08-22

Title:

Lariat-capping ribozyme (circular permutation form)

Classification:

RNA

Authors:

Meyer, M., Nielsen, H., Olieric, V., Roblin, P., Johansen, S.D., Westhof, E., Masquida, B.

Citation:

Speciation of a group I intron into a lariat capping ribozyme.
Proc. Natl. Acad. Sci. U.S.A. 111 pp.7659 - 7664 2014

Experiment:

X-RAY DIFFRACTION Resolution:2.50004Å R work:0.198R free:0.244

Equivalence Class: 

NR_all_57460.2 

Eq. Class Rep:

4P95

NDB ID:

5Z98

PDB ID:

5Z98 

Release:

2018-08-15

Title:

Crystal Structure of the Primate APOBEC3H Dimer mediated by RNA Duplex

Classification:

ANTIVIRAL PROTEIN/RNA

Authors:

Matsuoka, T., Nagae, T., Ode, H., Awazu, H., Kurosawa, T., Hamano, A., Matsuoka, K., Hachiya, A., Imahashi, M., Yokomaku, Y., Watanabe, N., Iwatani, Y.

Citation:

Structural basis of chimpanzee APOBEC3H dimerization stabilized by double-stranded RNA.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.251R free:0.32

Equivalence Class: 

NR_all_30582.1 

Eq. Class Rep:

5Z98

NDB ID:

5Z98

PDB ID:

5Z98 

Release:

2018-08-15

Title:

Crystal Structure of the Primate APOBEC3H Dimer mediated by RNA Duplex

Classification:

ANTIVIRAL PROTEIN/RNA

Authors:

Matsuoka, T., Nagae, T., Ode, H., Awazu, H., Kurosawa, T., Hamano, A., Matsuoka, K., Hachiya, A., Imahashi, M., Yokomaku, Y., Watanabe, N., Iwatani, Y.

Citation:

Structural basis of chimpanzee APOBEC3H dimerization stabilized by double-stranded RNA.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.251R free:0.32

Equivalence Class: 

NR_all_85489.1 

Eq. Class Rep:

5Z98

NDB ID:

6DMN

PDB ID:

6DMN 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked in 2 mM Ca2+ and 200 mM K+ at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.27Å R work:0.15R free:0.171

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DMN

PDB ID:

6DMN 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked in 2 mM Ca2+ and 200 mM K+ at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.27Å R work:0.15R free:0.171

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DMV

PDB ID:

6DMV 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked for 40 s in 2 mM Mg2+ and 200 mM K+ at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.52Å R work:0.161R free:0.181

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DMV

PDB ID:

6DMV 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked for 40 s in 2 mM Mg2+ and 200 mM K+ at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.52Å R work:0.161R free:0.181

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DO8

PDB ID:

6DO8 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 80 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.414Å R work:0.149R free:0.168

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DO8

PDB ID:

6DO8 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 80 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.414Å R work:0.149R free:0.168

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DO9

PDB ID:

6DO9 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.36Å R work:0.153R free:0.175

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DO9

PDB ID:

6DO9 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.36Å R work:0.153R free:0.175

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOA

PDB ID:

6DOA 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 480 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.474Å R work:0.159R free:0.186

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOA

PDB ID:

6DOA 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 480 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.474Å R work:0.159R free:0.186

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOB

PDB ID:

6DOB 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.343Å R work:0.168R free:0.195

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOB

PDB ID:

6DOB 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.343Å R work:0.168R free:0.195

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOC

PDB ID:

6DOC 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 240 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.496Å R work:0.188R free:0.221

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOC

PDB ID:

6DOC 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 240 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.496Å R work:0.188R free:0.221

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOD

PDB ID:

6DOD 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 360 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.535Å R work:0.16R free:0.194

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOD

PDB ID:

6DOD 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 360 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.535Å R work:0.16R free:0.194

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOE

PDB ID:

6DOE 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 420 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.451Å R work:0.17R free:0.198

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOE

PDB ID:

6DOE 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 420 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.451Å R work:0.17R free:0.198

Equivalence Class: 

NR_all_23205.2 

Eq. Class Rep:

6DO8

NDB ID:

6DOF

PDB ID:

6DOF 

Release:

2018-08-15

Title:

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 540 s at 21 C

Classification:

hydrolase/dna/rna

Authors:

Samara, N.L., Yang, W.

Citation:

Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol. 25 pp.715 - 721 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.433Å R work:0.161R free:0.186

Equivalence Class: 

NR_all_08576.2 

Eq. Class Rep:

6DO8