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As of 10-Feb-2016 number of released structures: 7984
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2939  Download results as an excel file       Gallery view

NDB ID:

5EBI

PDB ID:

5EBI 

Release:

2016-02-10

Title:

Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning

Classification:

DNA/RNA CHIMERA

Authors:

Gilski, M., Drozdzal, P., Kierzek, R., Jaskolski, M.

Citation:

Atomic resolution structure of a chimeric DNA-RNA Z-type duplex in complex with Ba2+ ions: a case of complicated multi-domain twinning
Acta Crystallogr.,Sect.D 72 pp.211 - 223 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.09Å R work:0.115R free:0.168

NDB ID:

2N0J

PDB ID:

2N0J 

Release:

2016-02-03

Title:

Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostamycin complex

Classification:

RNA

Authors:

Duchardt-Ferner, E., Gottstein-Schmidtke, S.R., Weigand, J.E., Ohlenschlager, O., Wurm, J.P., Hammann, C., Suess, B., Wohnert, J.

Citation:

What a Difference an OH Makes: Conformational Dynamics as the Basis for the Ligand Specificity of the Neomycin-Sensing Riboswitch.
Angew.Chem.Int.Ed.Engl. 55 pp.1527 - 1530 2016

Experiment:

SOLUTION NMR

NDB ID:

5F8K

PDB ID:

5F8K 

Release:

2016-02-03

Title:

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome

Authors:

Seefeldt, A.C., Graf, M., Perebaskine, N., Nguyen, F., Arenz, S., Mardirossian, M., Scocchi, M., Wilson, D.N., Innis, C.A.

Citation:

Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.248R free:0.291

NDB ID:

5E7K

PDB ID:

5E7K 

Release:

2016-01-27

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Khusainov, I., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 7 pp.10457 - 10457 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.191R free:0.257

NDB ID:

5E81

PDB ID:

5E81 

Release:

2016-01-27

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Khusainov, I., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 7 pp.10457 - 10457 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.195R free:0.241

NDB ID:

5EIM

PDB ID:

5EIM 

Release:

2016-01-27

Title:

YTH domain-containing protein mmi1 and RNA complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Wu, B.X., Xu, J.H., Su, S.C., Ma, J.B.

Citation:

Cystal structure of YTH domain of SpMmi1-DSR complex.
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.54Å R work:0.171R free:0.224

NDB ID:

5EL4

PDB ID:

5EL4 

Release:

2016-01-27

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Khusainov, I., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 7 pp.10457 - 10457 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.193R free:0.251

NDB ID:

5EL5

PDB ID:

5EL5 

Release:

2016-01-27

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Khusainov, I., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 7 pp.10457 - 10457 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.197R free:0.253

NDB ID:

5EL6

PDB ID:

5EL6 

Release:

2016-01-27

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Khusainov, I., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 7 pp.10457 - 10457 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.195R free:0.248

NDB ID:

5EL7

PDB ID:

5EL7 

Release:

2016-01-27

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Khusainov, I., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 7 pp.10457 - 10457 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.191R free:0.247

NDB ID:

5F9R

PDB ID:

5F9R 

Release:

2016-01-27

Title:

Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage

Classification:

HYDROLASE/DNA/RNA

Authors:

Jiang, F., Taylor, D.W., Chen, J.S., Kornfeld, J.E., Zhou, K., Thompson, A.J., Nogales, E., Doudna, J.A.

Citation:

Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage
Science pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.236R free:0.298

NDB ID:

5FDU

PDB ID:

5FDU 

Release:

2016-01-27

Title:

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Classification:

RIBOSOME

Authors:

Seefeldt, A.C., Graf, M., Perebaskine, N., Nguyen, F., Arenz, S., Mardirossian, M., Scocchi, M., Wilson, D.N., Innis, C.A.

Citation:

Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.183R free:0.233

NDB ID:

5FDV

PDB ID:

5FDV 

Release:

2016-01-27

Title:

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Classification:

RIBOSOME

Authors:

Seefeldt, A.C., Graf, M., Perebaskine, N., Nguyen, F., Arenz, S., Mardirossian, M., Scocchi, M., Wilson, D.N., Innis, C.A.

Citation:

Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.188R free:0.239

NDB ID:

4XW0

PDB ID:

4XW0 

Release:

2016-01-13

Title:

Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex

Classification:

RNA

Authors:

Rypniewski, W., Banaszak, K., Kulinski, T., Kiliszek, A.

Citation:

Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation.
Rna 22 pp.22 - 31 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.81Å R work:0.223R free:0.298

NDB ID:

4XW1

PDB ID:

4XW1 

Release:

2016-01-13

Title:

Crystal structure of (GCCU(G-LNA)CCUG)2 duplex

Classification:

RNA

Authors:

Rypniewski, W., Banaszak, K., Kulinski, T., Kiliszek, A.

Citation:

Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation.
Rna 22 pp.22 - 31 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.302Å R work:0.19R free:0.19

NDB ID:

5CKI

PDB ID:

5CKI 

Release:

2016-01-13

Title:

Crystal structure of 9DB1* deoxyribozyme (Cobalt hexammine soaked crystals)

Classification:

DNA

Authors:

Ponce-Salvatierra, A., Wawrzyniak-Turek, K., Steuerwald, U., Hobartner, C., Pena, V.

Citation:

Crystal structure of a DNA catalyst.
Nature 529 pp.231 - 234 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.985Å R work:0.256R free:0.31

NDB ID:

5CKK

PDB ID:

5CKK 

Release:

2016-01-13

Title:

Crystal structure of 9DB1* deoxyribozyme

Classification:

LIGASE

Authors:

Ponce-Salvatierra, A., Wawrzyniak-Turek, K., Steuerwald, U., Hobartner, C., Pena, V.

Citation:

Crystal structure of a DNA catalyst.
Nature 529 pp.231 - 234 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.801Å R work:0.274R free:0.287

NDB ID:

5DV7

PDB ID:

5DV7 

Release:

2016-01-13

Title:

Crystal Structure of NF90 tandem dsRBDs with dsRNA

Classification:

RNA BINDING PROTEIN

Authors:

Jayachandran, U., Grey, H., Cook, A.G.

Citation:

Nuclear factor 90 uses an ADAR2-like binding mode to recognize specific bases in dsRNA.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.239R free:0.273

NDB ID:

5ELR

PDB ID:

5ELR 

Release:

2016-01-13

Title:

Structure of the KH-QUA2 domain of T-STAR in complex with AAUAAU RNA

Classification:

RNA BINDING PROTEIN

Authors:

Feracci, M., Foot, J.N., Grellscheid, S.N., Danilenko, M., Stehle, R., Gonchar, O., Kang, H.S., Dalgliesh, C., Meyer, N.H., Liu, Y., Lahat, A., Sattler, M., Eperon, I.C., Elliott, D.J., Dominguez, C.

Citation:

Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68.
Nat Commun 7 pp.10355 - 10355 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.227R free:0.269

NDB ID:

5ELS

PDB ID:

5ELS 

Release:

2016-01-13

Title:

Structure of the KH domain of T-STAR in complex with AAAUAA RNA

Classification:

RNA BINDING PROTEIN

Authors:

Feracci, M., Foot, J.N., Grellscheid, S.N., Danilenko, M., Stehle, R., Gonchar, O., Kang, H.S., Dalgliesh, C., Meyer, N.H., Liu, Y., Lahat, A., Sattler, M., Eperon, I.C., Elliott, D.J., Dominguez, C.

Citation:

Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68.
Nat Commun 7 pp.10355 - 10355 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.873Å R work:0.187R free:0.235

NDB ID:

5ELT

PDB ID:

5ELT 

Release:

2016-01-13

Title:

Structure of the QUA1-KH domain of T-STAR in complex with UAAU RNA

Classification:

RNA BINDING PROTEIN

Authors:

Feracci, M., Foot, J.N., Grellscheid, S.N., Danilenko, M., Stehle, R., Gonchar, O., Kang, H.S., Dalgliesh, C., Meyer, N.H., Liu, Y., Lahat, A., Sattler, M., Eperon, I.C., Elliott, D.J., Dominguez, C.

Citation:

Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68.
Nat Commun 7 pp.10355 - 10355 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.13Å R work:0.204R free:0.256

NDB ID:

5EME

PDB ID:

5EME 

Release:

2016-01-13

Title:

Complex of RNA r(GCAGCAGC) with antisense PNA p(CTGCTGC)

Classification:

RNA

Authors:

Kiliszek, A., Banaszak, K., Dauter, Z., Rypniewski, W.

Citation:

The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.15Å R work:0.139R free:0.176

NDB ID:

5EMF

PDB ID:

5EMF 

Release:

2016-01-13

Title:

Crystal structure of RNA r(GCUGCUGC) with antisense PNA p(GCAGCAGC)

Classification:

RNA

Authors:

Kiliszek, A., Banaszak, K., Dauter, Z., Rypniewski, W.

Citation:

The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.14Å R work:0.121R free:0.152

NDB ID:

5EMO

PDB ID:

5EMO 

Release:

2016-01-13

Title:

Structure of the star domain of T-STAR in complex with AUUAAA RNA

Classification:

RNA BINDING PROTEIN

Authors:

Feracci, M., Foot, J.N., Grellscheid, S.N., Danilenko, M., Stehle, R., Gonchar, O., Kang, H.S., Dalgliesh, C., Meyer, N.H., Liu, Y., Lahat, A., Sattler, M., Eperon, I.C., Elliott, D.J., Dominguez, C.

Citation:

Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68.
Nat Commun 7 pp.10355 - 10355 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.22R free:0.268

NDB ID:

5EPI

PDB ID:

5EPI 

Release:

2016-01-13

Title:

CRYSTAL STRUCTURE OF INFLUENZA B POLYMERASE WITH BOUND 5' CRNA EXHIBITS A NOVEL DOMAIN ARRANGEMENT

Classification:

TRANSFERASE

Authors:

Thierry, E., Guilligay, D., Kosinski, J., Bock, T., Gaudon, S., Round, A., Pflug, A., Hengrung, N., El Omari, K., Baudin, F., Hart, D.J., Beck, M., Cusack, S.

Citation:

Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains.
Mol.Cell 61 pp.125 - 137 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.1Å R work:0.257R free:0.287

NDB ID:

5F98

PDB ID:

5F98 

Release:

2016-01-13

Title:

Crystal structure of RIG-I in complex with Cap-0 RNA

Classification:

hydrolase/rna

Authors:

Devarkar, S.C., Wang, C., Miller, M.T., Ramanathan, A., Jiang, F., Khan, A.G., Patel, S.S., Marcotrigiano, J.

Citation:

Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA 113 pp.596 - 601 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.28Å R work:0.221R free:0.277

NDB ID:

5F9F

PDB ID:

5F9F 

Release:

2016-01-13

Title:

Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA

Classification:

hydrolase/rna

Authors:

Devarkar, S.C., Wang, C., Miller, M.T., Ramanathan, A., Jiang, F., Khan, A.G., Patel, S.S., Marcotrigiano, J.

Citation:

Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA 113 pp.596 - 601 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.601Å R work:0.202R free:0.259

NDB ID:

5F9H

PDB ID:

5F9H 

Release:

2016-01-13

Title:

Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA

Classification:

hydrolase/rna

Authors:

Devarkar, S.C., Wang, C., Miller, M.T., Ramanathan, A., Jiang, F., Khan, A.G., Patel, S.S., Marcotrigiano, J.

Citation:

Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA 113 pp.596 - 601 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.213R free:0.265

NDB ID:

NA3383

PDB ID:

5FMZ 

Release:

2016-01-13

Title:

Crystal structure of Influenza B polymerase with bound 5' vRNA

Classification:

TRANSCRIPTION

Authors:

Thierry, E., Guilligay, D., Kosinski, J., Bock, T., Gaudon, S., Round, A., Pflug, A., Hengrung, N., El Omari, K., Baudin, F., Hart, D.J., Beck, M., Cusack, S.

Citation:

Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of Pb2 Domains.
Mol.Cell 61 pp.125 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.255R free:0.276

NDB ID:

4YYE

PDB ID:

4YYE 

Release:

2016-01-06

Title:

Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase (MST1) in complex with the canonical tRNAThr and threonyl sulfamoyl adenylate

Classification:

Ligase/RNA

Authors:

Holman, K.M., Wu, J., Ling, J., Simonovic, M.

Citation:

The crystal structure of yeast mitochondrial ThrRS in complex with the canonical threonine tRNA.
Nucleic Acids Res. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.301Å R work:0.16R free:0.202

NDB ID:

2N7M

PDB ID:

2N7M 

Release:

2015-12-30

Title:

NMR-SAXS/WAXS Structure of the core of the U4/U6 di-snRNA

Classification:

RNA

Authors:

Cornilescu, G., Didychuk, A.L., Rodgers, M.L., Michael, L.A., Burke, J.E., Montemayor, E.J., Hoskins, A.A., Butcher, S.E.

Citation:

Structural analysis of multi-helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.
J.Mol.Biol. pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

5DOX

PDB ID:

5DOX 

Release:

2015-12-30

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Classification:

Ribosome/Antibiotic

Authors:

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K.A., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

Citation:

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Mol.Cell 58 pp.832 - 844 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.232R free:0.283

NDB ID:

5DOY

PDB ID:

5DOY 

Release:

2015-12-30

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Classification:

Ribosome/Antibiotic

Authors:

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K.A., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

Citation:

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Mol.Cell 58 pp.832 - 844 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.233R free:0.282

NDB ID:

2MQO

PDB ID:

2MQO 

Release:

2015-12-23

Title:

Structural Investigation of hnRNP L bound to RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Blatter, M., Allain, F.

Citation:

Structural Investigation of hnRNP L bound to RNA
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MQP

PDB ID:

2MQP 

Release:

2015-12-23

Title:

Structural Investigation of hnRNP L bound to RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Blatter, M., Allain, F.

Citation:

Structural Investigation of hnRNP L bound to RNA
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

2MQQ

PDB ID:

2MQQ 

Release:

2015-12-23

Title:

Structural Investigation of hnRNP L bound to RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Blatter, M., Allain, F.

Citation:

Structural Investigation of hnRNP L bound to RNA
To be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

4WFN

PDB ID:

4WFN 

Release:

2015-12-23

Title:

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin

Classification:

RIBOSOME

Authors:

Wekselman, I., Zimmerman, E., Rozenberg, H., Bashan, A., Lindahl, L., Zengel, J.M., Yonath, A.

Citation:

A mutation in the ribosomal protein L22 modulates the structure of the nascent protein exit tunnel
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.54Å R work:0.233R free:0.282

NDB ID:

5CEU

PDB ID:

5CEU 

Release:

2015-12-23

Title:

Crystal structure of Rv2837c complexed with 5'-pApA

Classification:

HYDROLASE/RNA

Authors:

He, Q., Wang, F., Liu, S., Zhu, D., Cong, H., Gao, F., Li, B., Wang, H., Lin, Z., Liao, J., Gu, L.

Citation:

Structural and Biochemical Insight into the Mechanism of Rv2837c from Mycobacterium tuberculosis as a C-di-NMP Phosphodiesterase
J.Biol.Chem. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.363Å R work:0.225R free:0.28

NDB ID:

5DDO

PDB ID:

5DDO 

Release:

2015-12-23

Title:

Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Ren, A., Xue, Y., Peselis, A., Serganov, A., Al-Hashimi, H.M., Patel, D.J.

Citation:

Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep 13 pp.1800 - 1813 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.227R free:0.288

NDB ID:

5DDP

PDB ID:

5DDP 

Release:

2015-12-23

Title:

L-glutamine riboswitch bound with L-glutamine

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Ren, A., Xue, Y., Peselis, A., Serganov, A., Al-Hashimi, H.M., Patel, D.J.

Citation:

Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep 13 pp.1800 - 1813 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.302Å R work:0.19R free:0.243

NDB ID:

5DDQ

PDB ID:

5DDQ 

Release:

2015-12-23

Title:

L-glutamine riboswitch bound with L-glutamine soaked with Mn2+

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Ren, A., Xue, Y., Peselis, A., Serganov, A., Al-Hashimi, H.M., Patel, D.J.

Citation:

Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep 13 pp.1800 - 1813 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.196R free:0.256

NDB ID:

5DDR

PDB ID:

5DDR 

Release:

2015-12-23

Title:

L-glutamine riboswitch bound with L-glutamine soaked with Cs+

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Ren, A., Xue, Y., Peselis, A., Serganov, A., Al-Hashimi, H.M., Patel, D.J.

Citation:

Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep 13 pp.1800 - 1813 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.605Å R work:0.211R free:0.27

NDB ID:

4XWW

PDB ID:

4XWW 

Release:

2015-12-16

Title:

Crystal structure of RNase J complexed with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhao, Y., Lu, M., Zhang, H., Hu, J., Zhou, C., Xu, Q., Shah, A.M.U.H., Xu, H., Wang, L., Hua, Y.

Citation:

Structural insights into catalysis and dimerization enhanced exonuclease activity of RNase J
Nucleic Acids Res. 43 pp.5550 - 5559 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.194R free:0.216

NDB ID:

2MXS

PDB ID:

2MXS 

Release:

2015-12-09

Title:

Solution NMR-structure of the neomycin sensing riboswitch RNA bound to paromomycin

Classification:

RNA

Authors:

Duchardt-Ferner, E., Gottstein-Schmidtke, S.R., Weigand, J.E., Ohlenschlager, O., Wurm, J.P., Hammann, C., Suess, B., Wohnert, J.

Citation:

What a Difference an OH Makes: Conformational Dynamics as the Basis for the Ligand Specificity of the Neomycin-Sensing Riboswitch.
Angew.Chem.Int.Ed.Engl. 55 pp.1527 - 1530 2016

Experiment:

SOLUTION NMR

NDB ID:

5ELH

PDB ID:

5ELH 

Release:

2015-12-09

Title:

Crystal structure of mouse Unkempt zinc fingers 1-3 (ZnF1-3), bound to RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Murn, J., Teplova, M., Zarnack, K., Shi, Y., Patel, D.J.

Citation:

Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt.
Nat.Struct.Mol.Biol. 23 pp.16 - 23 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.178R free:0.215

NDB ID:

5ELK

PDB ID:

5ELK 

Release:

2015-12-09

Title:

Crystal structure of mouse Unkempt zinc fingers 4-6 (ZnF4-6), bound to RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Murn, J., Teplova, M., Zarnack, K., Shi, Y., Patel, D.J.

Citation:

Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt.
Nat.Struct.Mol.Biol. 23 pp.16 - 23 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.18R free:0.223

NDB ID:

5EX7

PDB ID:

5EX7 

Release:

2015-12-09

Title:

Crystal structure of Brat NHL domain in complex with an 8-nt hunchback mRNA

Classification:

TRANSLATION/RNA

Authors:

Wang, Y., Yu, Z., Wang, M., Liu, C.P., Yang, N., Xu, R.M.

Citation:

Crystal structure of Brat NHL domain in complex with an 8-nt hunchback mRNA
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.18R free:0.23

NDB ID:

2N4L

PDB ID:

2N4L 

Release:

2015-12-02

Title:

Solution Structure of the HIV-1 Intron Splicing Silencer and its Interactions with the UP1 Domain of hnRNP A1

Classification:

RNA

Authors:

Jain, N., Morgan, C.E., Rife, B.D., Salemi, M., Tolbert, B.S.

Citation:

Solution Structure of the HIV-1 Intron Splicing Silencer and its Interactions with the UP1 Domain of hnRNP A1
J.Biol.Chem. pp. - 2015

Experiment:

SOLUTION NMR

NDB ID:

5DTO

PDB ID:

5DTO 

Release:

2015-11-25

Title:

Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAH

Classification:

VIRAL PROTEIN/RNA

Authors:

Zhao, Y., Soh, T.S., Lim, S.P., Chung, K.Y., Swaminathan, K., Vasudevan, S.G., Shi, P.-Y., Lescar, J., Luo, D.

Citation:

Molecular basis for specific viral RNA recognition and 2'-O-ribose methylation by the dengue virus nonstructural protein 5 (NS5)
Proc.Natl.Acad.Sci.USA 112 pp.14834 - 14839 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.603Å R work:0.182R free:0.243

NDB ID:

4X62

PDB ID:

4X62 

Release:

2015-11-18

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome/antibiotic

Authors:

Choi, J., Ieong, K.W., Demirci, H., Chen, J., Petrov, A., Prabhakar, A., O'Leary, S.E., Dominissini, D., Rechavi, G., Soltis, S.M., Ehrenberg, M., Puglisi, J.D.

Citation:

N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics.
Nat.Struct.Mol.Biol. 23 pp.110 - 115 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.4492Å R work:0.18R free:0.214