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As of 27-Jul-2016 number of released structures: 8382
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3102  Download results as an excel file       Gallery view

NDB ID:

5IT8

PDB ID:

5IT8 

Release:

2016-07-27

Title:

High-resolution structure of the Escherichia coli ribosome

Classification:

RIBOSOME

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.12Å R work:0.189R free:0.219

NDB ID:

5J5B

PDB ID:

5J5B 

Release:

2016-07-27

Title:

Structure of the WT E coli ribosome bound to tetracycline

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.209R free:0.218

NDB ID:

5J7L

PDB ID:

5J7L 

Release:

2016-07-27

Title:

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.172R free:0.193

NDB ID:

5CH0

PDB ID:

5CH0 

Release:

2016-07-20

Title:

Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine

Classification:

DNA

Authors:

Sheng, J.

Citation:

Crystal structure of an A-form DNA duplex containing 5-hydroxylmethylcytidine
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.189R free:0.201

NDB ID:

5DEK

PDB ID:

5DEK 

Release:

2016-07-20

Title:

RNA octamer containing dT

Classification:

RNA

Authors:

Kel In, A.V., Zlatev, I., Harp, J., Jayaraman, M., Bisbe, A., O Shea, J., Taneja, N., Manoharan, R.M., Khan, S., Charisse, K., Maier, M.A., Egli, M., Rajeev, K.G., Manoharan, M.

Citation:

Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem. 81 pp.2261 - 2279 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.993Å R work:0.239R free:0.262

NDB ID:

5E6M

PDB ID:

5E6M 

Release:

2016-07-20

Title:

Crystal structure of human wild type GlyRS bound with tRNAGly

Classification:

LIGASE/RNA

Authors:

Qin, X., Deng, X., Chen, L., Xie, W.

Citation:

Crystal Structure of the Wild-Type Human GlyRS Bound with tRNA(Gly) in a Productive Conformation
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.927Å R work:0.193R free:0.243

NDB ID:

5GJB

PDB ID:

5GJB 

Release:

2016-07-20

Title:

Zika virus NS3 helicase in complex with ssRNA

Classification:

HYDROLASE/RNA

Authors:

Tian, H.L., Ji, X.Y., Yang, X.Y., Zhang, Z.X., Lu, Z.K., Yang, K.L., Chen, C., Zhao, Q., Chi, H., Mu, Z.Y., Xie, W., Wang, Z.F., Lou, H.Q., Yang, H.T., Rao, Z.H.

Citation:

The Structural Basis of Zika Virus Helicase in Recognizing Its Substrates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.702Å R work:0.153R free:0.195

NDB ID:

5JS1

PDB ID:

5JS1 

Release:

2016-07-20

Title:

Human Argonaute2 Bound to an siRNA

Classification:

HYDROLASE/RNA

Authors:

Schirle, N.T., Kinberger, G.A., Murray, H.F., Lima, W.F., Prakash, T.P., MacRae, I.J.

Citation:

Structural analysis of human Argonaute-2 bound to a modified siRNA guide.
J.Am.Chem.Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.499Å R work:0.216R free:0.247

NDB ID:

5JS2

PDB ID:

5JS2 

Release:

2016-07-20

Title:

Human Argonaute-2 Bound to a Modified siRNA

Classification:

HYDROLASE/RNA

Authors:

Schirle, N.T., Kinberger, G.A., Murray, H.F., Lima, W.F., Prakash, T.P., MacRae, I.J.

Citation:

Structural analysis of human Argonaute-2 bound to a modified siRNA guide.
J.Am.Chem.Soc. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.954Å R work:0.222R free:0.261

NDB ID:

5KI6

PDB ID:

5KI6 

Release:

2016-07-20

Title:

Human Argonaute-2 bound to a guide RNA with a nucleobase modification at position 1

Classification:

HYDROLASE/RNA

Authors:

Suter, S.R., Sheu-Gruttadauria, J., Schirle, N.T., Valenzuela, R., Ball-Jones, A.A., Onizuka, K., MacRae, I.J., Beal, P.A.

Citation:

Structure-Guided Control of siRNA Off-Target Effects.
J.Am.Chem.Soc. 138 pp.8667 - 8669 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.153Å R work:0.237R free:0.269

NDB ID:

5JEA

PDB ID:

5JEA 

Release:

2016-07-13

Title:

Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA

Classification:

HYDROLASE/RNA

Authors:

Kowalinski, E., Kogel, A., Ebert, J., Reichelt, P., Stegmann, E., Habermann, B., Conti, E.

Citation:

Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex.
Mol.Cell 63 pp.125 - 134 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.215R free:0.258

NDB ID:

5K7C

PDB ID:

5K7C 

Release:

2016-07-13

Title:

The native structure of native pistol ribozyme

Classification:

RNA/DNA

Authors:

Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R., Patel, D.J.

Citation:

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.73Å R work:0.2R free:0.25

NDB ID:

5K7D

PDB ID:

5K7D 

Release:

2016-07-13

Title:

The structure of native pistol ribozyme, bound to Iridium

Classification:

RNA/DNA

Authors:

Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R., Patel, D.J.

Citation:

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.68Å R work:0.189R free:0.239

NDB ID:

5K7E

PDB ID:

5K7E 

Release:

2016-07-13

Title:

The structure of pistol ribozyme, soaked with Mn2+

Classification:

RNA/DNA

Authors:

Ren, A., Vusurovic, N., Gebetsberger, J., Gao, P., Juen, M., Kreutz, C., Micura, R., Patel, D.J.

Citation:

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.27Å R work:0.239R free:0.289

NDB ID:

4YY3

PDB ID:

4YY3 

Release:

2016-07-06

Title:

30S ribosomal subunit- HigB complex

Classification:

RIBOSOME

Authors:

Schureck, M.A., Maehigashi, T., Miles, S.J., Marquez, J., Dunham, C.M.

Citation:

mRNA bound to the 30S subunit is a HigB toxin substrate.
Rna pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.214R free:0.238

NDB ID:

5AWH

PDB ID:

5AWH 

Release:

2016-07-06

Title:

Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex

Classification:

RNA BINDING PROTEIN/DNA/RNA

Authors:

Miyoshi, T., Ito, K., Murakami, R., Uchiumi, T.

Citation:

Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute.
Nat Commun 7 pp.11846 - 11846 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.184R free:0.232

NDB ID:

5DCV

PDB ID:

5DCV 

Release:

2016-07-06

Title:

Crystal structure of PhoRpp38-SL12M complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Oshima, K., Kakiuchi, Y., Tanaka, Y., Ueda, T., Nakashima, T., Kimura, M., Yao, M.

Citation:

Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38
Biochem.Biophys.Res.Commun. 474 pp.541 - 546 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.401Å R work:0.262R free:0.311

NDB ID:

5E02

PDB ID:

5E02 

Release:

2016-07-06

Title:

Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock

Classification:

Hydrolase, RNA BINDING PROTEIN/RNA

Authors:

Conrad, K.S., Hurley, J.M., Widom, J., Ringelberg, C.S., Loros, J.J., Dunlap, J.C., Crane, B.R.

Citation:

Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock.
Embo J. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.8Å R work:0.277R free:0.32

NDB ID:

5J88

PDB ID:

5J88 

Release:

2016-07-06

Title:

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Classification:

ribosome/antibiotic

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.32Å R work:0.175R free:0.218

NDB ID:

5J8A

PDB ID:

5J8A 

Release:

2016-07-06

Title:

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Classification:

ribosome/antibiotic

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.171R free:0.192

NDB ID:

5J91

PDB ID:

5J91 

Release:

2016-07-06

Title:

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Classification:

ribosome/antibiotic

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.96Å R work:0.208R free:0.221

NDB ID:

5JC9

PDB ID:

5JC9 

Release:

2016-07-06

Title:

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Classification:

RIBOSOME

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.03Å R work:0.172R free:0.2

NDB ID:

5K8H

PDB ID:

5K8H 

Release:

2016-07-06

Title:

The X-ray crystal structure of a parallel poly(rA) double helix generated by rA7 at acidic pH

Classification:

RNA

Authors:

Gleghorn, M.L., Zhao, J., Turner, D.H., Maquat, L.E.

Citation:

Crystal structure of a poly(rA) staggered zipper at acidic pH: evidence that adenine N1 protonation mediates parallel double helix formation.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.069Å R work:0.106R free:0.108

NDB ID:

5D8T

PDB ID:

5D8T 

Release:

2016-06-29

Title:

RNA octamer containing (S)-5' methyl, 2'-F U.

Classification:

RNA

Authors:

Kel In, A.V., Zlatev, I., Harp, J., Jayaraman, M., Bisbe, A., O Shea, J., Taneja, N., Manoharan, R.M., Khan, S., Charisse, K., Maier, M.A., Egli, M., Rajeev, K.G., Manoharan, M.

Citation:

Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem. 81 pp.2261 - 2279 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.2Å R work:0.119R free:0.157

NDB ID:

5DER

PDB ID:

5DER 

Release:

2016-06-29

Title:

RNA oligonucleotide containing (R)-C5'-ME-2'F U

Classification:

RNA

Authors:

Kel In, A.V., Zlatev, I., Harp, J., Jayaraman, M., Bisbe, A., O Shea, J., Taneja, N., Manoharan, R.M., Khan, S., Charisse, K., Maier, M.A., Egli, M., Rajeev, K.G., Manoharan, M.

Citation:

Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem. 81 pp.2261 - 2279 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.256R free:0.273

NDB ID:

5BWS

PDB ID:

5BWS 

Release:

2016-06-22

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)

Classification:

RNA/ANTIBIOTIC

Authors:

Kondo, J., Hanessian, S., Kanazawa, H.

Citation:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.178R free:0.232

NDB ID:

5BXK

PDB ID:

5BXK 

Release:

2016-06-22

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)

Classification:

RNA/ANTIBIOTIC

Authors:

Kondo, J., Hanessian, S., Kanazawa, H.

Citation:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.182R free:0.237

NDB ID:

5F8G

PDB ID:

5F8G 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S1 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.78Å R work:0.192R free:0.241

NDB ID:

5F8H

PDB ID:

5F8H 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S1/2 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.198R free:0.244

NDB ID:

5F8I

PDB ID:

5F8I 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.503Å R work:0.199R free:0.243

NDB ID:

5F8J

PDB ID:

5F8J 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S4 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.675Å R work:0.182R free:0.228

NDB ID:

5F8L

PDB ID:

5F8L 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C3S1 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.812Å R work:0.2R free:0.237

NDB ID:

5F8M

PDB ID:

5F8M 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C3S4/5 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.83Å R work:0.193R free:0.232

NDB ID:

5F8N

PDB ID:

5F8N 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C3S6 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.484Å R work:0.193R free:0.234

NDB ID:

5I2D

PDB ID:

5I2D 

Release:

2016-06-22

Title:

Crystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPo

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Feng, Y., Zhang, Y., Ebright, R.H.

Citation:

Structural basis of transcription activation.
Science 352 pp.1330 - 1333 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.405Å R work:0.241R free:0.284

NDB ID:

5I4L

PDB ID:

5I4L 

Release:

2016-06-22

Title:

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I.V., Akulich, K.A., Makeeva, D.S., Osterman, I.A., Skvortsov, D.A., Sergiev, P.V., Dontsova, O.A., Yusupova, G., Yusupov, M.M., Dmitriev, S.E.

Citation:

Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome.
Sci Rep 6 pp.27720 - 27720 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.212R free:0.251

NDB ID:

5FW2

PDB ID:

5FW2 

Release:

2016-06-15

Title:

Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA

Classification:

HYDROLASE/DNA/RNA

Authors:

Anders, C., Bargsten, K., Jinek, M.

Citation:

Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell 61 pp.895 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.676Å R work:0.204R free:0.231

NDB ID:

5FW3

PDB ID:

5FW3 

Release:

2016-06-15

Title:

Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA

Classification:

HYDROLASE/DNA/RNA

Authors:

Anders, C., Bargsten, K., Jinek, M.

Citation:

Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell 61 pp.895 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.214R free:0.241

NDB ID:

5J0M

PDB ID:

5J0M 

Release:

2016-06-08

Title:

Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat

Classification:

VIRAL PROTEIN

Authors:

Borkar, A.N., Bardaro, M.F., Camilloni, C., Aprile, F.A., Varani, G., Vendruscolo, M.

Citation:

Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA 113 pp.7171 - 7176 2016

Experiment:

SOLUTION NMR

NDB ID:

5J1O

PDB ID:

5J1O 

Release:

2016-06-08

Title:

Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat

Classification:

VIRAL PROTEIN

Authors:

Borkar, A.N., Bardaro, M.F., Camilloni, C., Aprile, F.A., Varani, G., Vendruscolo, M.

Citation:

Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA 113 pp.7171 - 7176 2016

Experiment:

SOLUTION NMR

NDB ID:

5J2W

PDB ID:

5J2W 

Release:

2016-06-08

Title:

Intermediate state lying on the pathway of release of Tat from HIV-1 TAR.

Classification:

VIRAL PROTEIN

Authors:

Borkar, A.N., Bardaro, M.F., Camilloni, C., Aprile, F.A., Varani, G., Vendruscolo, M.

Citation:

Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA 113 pp.7171 - 7176 2016

Experiment:

SOLUTION NMR

NDB ID:

5DC3

PDB ID:

5DC3 

Release:

2016-06-01

Title:

Complex of yeast 80S ribosome with non-modified eIF5A

Classification:

RIBOSOME

Authors:

Melnikov, S., Mailliot, J., Shin, B.S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Crystal structure of hypusine-containing translation factor eIF5A bound to a rotated eukaryotic ribosome.
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.252R free:0.3

NDB ID:

5JAJ

PDB ID:

5JAJ 

Release:

2016-06-01

Title:

Structure of chicken LGP2 witha 5'p 10-mer dsRNA and ADP-AlF4-Mg.

Classification:

RNA BINDING PROTEIN

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.133R free:0.168

NDB ID:

5JB2

PDB ID:

5JB2 

Release:

2016-06-01

Title:

Crystal structure of chicken LGP2 with 5'ppp 10-mer dsRNA and ADP-AlF4-Mg2+ at 2.2 A resolution.

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.188R free:0.244

NDB ID:

5JBG

PDB ID:

5JBG 

Release:

2016-06-01

Title:

Crystal structure of chicken LGP2 with 5'ppp 26-mer hairpin RNA with 3' GG overhang and ADP-AlF4-Mg2+ at 2.0 A resolution.

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.217R free:0.254

NDB ID:

5JBJ

PDB ID:

5JBJ 

Release:

2016-06-01

Title:

Crystal structure of chicken LGP2 with 5'p 12-mer dsRNA at 3.6 A resolution

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.58Å R work:0.253R free:0.318

NDB ID:

5JC3

PDB ID:

5JC3 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.6 A resolution (monoclinic form, twinned).

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.271R free:0.289

NDB ID:

5JC7

PDB ID:

5JC7 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 24-mer dsRNA and ADP-Mg2+ at 2.75 A resolution.

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.29R free:0.321

NDB ID:

5JCF

PDB ID:

5JCF 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.6 A resolution (orthorhombic form).

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.276R free:0.312

NDB ID:

5JCH

PDB ID:

5JCH 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.95 A resolution (untwinned).

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.255R free:0.27