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As of 04-Dec-2013 number of released structures: 6921
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2663   (Gallery view)

NDB ID:

 2M39

PDB ID:

2M39 

Release:

2013-11-27

Title:

The solution structure of 3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX

Classification:

RNA

Authors:

Plevnik, M., Cevec, M., Plavec, J.

Citation:

NMR structure of 2'-O-(2-methoxyethyl) modified and C5-methylated RNA dodecamer duplex.
Biochimie 95 pp.2385 - 2391 2013

Experiment:

 SOLUTION NMR

NDB ID:

 2M84

PDB ID:

2M84 

Release:

2013-11-27

Title:

Structure of 2'F-RNA/2'F-ANA chimeric duplex

Classification:

DNA, RNA

Authors:

Martin-Pintado, N., Deleavey, G.F., Portella, G., Campos-Olivas, R., Orozco, M., Damha, M.J., Gonzalez, C.

Citation:

Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids.
Angew.Chem.Int.Ed.Engl. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 2M8A

PDB ID:

2M8A 

Release:

2013-11-27

Title:

2'F-ANA/2'F-RNA alternated sequences

Classification:

DNA, RNA

Authors:

Martin-Pintado, N., Deleavey, G.F., Portella, G., Campos-Olivas, R., Orozco, M., Damha, M.J., Gonzalez, C.

Citation:

Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids.
Angew.Chem.Int.Ed.Engl. pp. - 2013

Experiment:

 SOLUTION NMR

NDB ID:

 NA2368

PDB ID:

4K27 

Release:

2013-11-27

Title:

Myotonic Dystrophy Type 2 RNA: Structural Studies and Designed Small Molecules that Modulate RNA Function

Classification:

RNA

Authors:

Childs-Disney, J., Yildirim, I., Park, H., Lohman, J., Guan, L., Tran, T., Sarkar, P., Schatz, G.C., Disney, M.D.

Citation:

Myotonic Dystrophy Type 2 RNA: Structural Studies and Designed Small Molecules that Modulate RNA Function
ACS CHEM.BIOL. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.35Å R work:0.194R free:0.239

Equivalence Class: 

NR_all_85656.1 

Eq. Class Rep:

4K27

NDB ID:

 NA2592

PDB ID:

4LGT 

Release:

2013-11-20

Title:

Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate

Classification:

ISOMERASE/RNA

Authors:

Czudnochowski, N., Ashley, G.W., Santi, D.V., Alian, A., Finer-Moore, J., Stroud, R.M.

Citation:

The mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs.
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.3Å R work:0.173R free:0.203

Equivalence Class: 

NR_all_51928.1 

Eq. Class Rep:

4LGT

NDB ID:

 NA2767

PDB ID:

4C7O 

Release:

2013-11-20

Title:

The structural basis of FtsY recruitment and GTPase activation by SRP RNA

Classification:

NUCLEAR PROTEIN/RNA

Authors:

Voigts-Hoffmann, F., Schmitz, N., Shen, K., Shan, S.O., Ataide, S.F., Ban, N.

Citation:

The Structural Basis of Ftsy Recruitment and Gtpase Activation by Srp RNA
Mol.Cell pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.163R free:0.225

Equivalence Class: 

NR_all_77643.1 

Eq. Class Rep:

4C7O

NDB ID:

 4BS2

PDB ID:

4BS2 

Release:

2013-11-13

Title:

NMR structure of human TDP-43 tandem RRMs in complex with UG-rich RNA

Classification:

TRANSCRIPTION

Authors:

Lukavsky, P.J., Daujotyte, D., Tollervey, J.R., Ule, J., Stuani, C., Buratti, E., Baralle, F.E., Damberger, F.F., Allain, F.H.T.

Citation:

Molecular Basis of Ug-Rich RNA Recognition by the Human Splicing Factor Tdp-43
Nat.Struct.Mol.Biol. pp. - 2013

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_67660.1 

Eq. Class Rep:

4BS2

NDB ID:

 NA2691

PDB ID:

4M7A 

Release:

2013-11-13

Title:

Crystal structure of Lsm2-8 complex bound to the 3' end sequence of U6 snRNA

Classification:

RNA BINDING PROTEIN

Authors:

Zhou, L., Hang, J., Zhou, Y., Wan, R., Lu, G., Yin, P., Yan, C., Shi, Y.

Citation:

Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA
Nature pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.781Å R work:0.244R free:0.278

Equivalence Class: 

NR_all_60160.1 

Eq. Class Rep:

4M7A

NDB ID:

 NA2692

PDB ID:

4M7D 

Release:

2013-11-13

Title:

Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU

Classification:

RNA BINDING PROTEIN

Authors:

Zhou, L., Hang, J., Zhou, Y., Wan, R., Lu, G., Yin, P., Yan, C., Shi, Y.

Citation:

Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA
Nature pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.595Å R work:0.239R free:0.282

Equivalence Class: 

NR_all_18083.1 

Eq. Class Rep:

4M7D

NDB ID:

 NA2278

PDB ID:

4JI2 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.64Å R work:0.155R free:0.211

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2279

PDB ID:

4JI0 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.492Å R work:0.166R free:0.211

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2280

PDB ID:

4JI1 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome/Antibiotic

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.144Å R work:0.164R free:0.207

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2281

PDB ID:

4JI3 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

RIBOSOME

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.35Å R work:0.167R free:0.215

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2282

PDB ID:

4JI4 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome/Antibiotic

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.692Å R work:0.156R free:0.214

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2283

PDB ID:

4JI5 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome/Antibiotic

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.85Å R work:0.152R free:0.202

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2284

PDB ID:

4JI6 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.55Å R work:0.15R free:0.201

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2285

PDB ID:

4JI7 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.158R free:0.201

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2286

PDB ID:

4JI8 

Release:

2013-11-06

Title:

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Classification:

Ribosome/Antibiotic

Authors:

Demirci, H., Wang, L., Murphy, F.V., Murphy, E.L., Carr, J.F., Blanchard, S.C., Jogl, G., Dahlberg, A.E., Gregory, S.T.

Citation:

The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna 19 pp.1791 - 1801 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.742Å R work:0.136R free:0.187

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

NDB ID:

 NA2731

PDB ID:

4BW0 

Release:

2013-11-06

Title:

The molecular recognition of kink turn structure by the L7Ae class of proteins

Classification:

RNA/RNA BINDING PROTEIN

Authors:

Huang, L., Lilley, D.M.J.

Citation:

The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA 19 pp.1703 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.33Å R work:0.18R free:0.2

Equivalence Class: 

NR_all_92583.1 

Eq. Class Rep:

4BW0

NDB ID:

 NA2732

PDB ID:

4C40 

Release:

2013-11-06

Title:

The molecular recognition of kink turn structure by the L7Ae class of proteins

Classification:

RNA

Authors:

Huang, L., Lilley, D.M.J.

Citation:

The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA 19 pp.1703 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.219R free:0.259

Equivalence Class: 

NR_all_88425.1 

Eq. Class Rep:

4C40

NDB ID:

 NA2768

PDB ID:

4C8Y 

Release:

2013-11-06

Title:

Cas6 (TTHA0078) substrate mimic complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Niewoehner, O., Jinek, M., Doudna, J.A.

Citation:

Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.19R free:0.215

Equivalence Class: 

NR_all_42942.1 

Eq. Class Rep:

4C8Y

NDB ID:

 NA2769

PDB ID:

4C8Z 

Release:

2013-11-06

Title:

Cas6 (TTHA0078) product complex

Classification:

HYDROLASE/RNA

Authors:

Niewoehner, O., Jinek, M., Doudna, J.A.

Citation:

Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.503Å R work:0.176R free:0.217

Equivalence Class: 

NR_all_71811.1 

Eq. Class Rep:

4C8Z

NDB ID:

 NA2686

PDB ID:

4M59 

Release:

2013-10-30

Title:

Crystal structure of the pentatricopeptide repeat protein PPR10 in complex with an 18-nt psaJ RNA element

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yin, P., Li, Q., Yan, C., Liu, Y., Liu, J., Yu, F., Wang, Z., Long, J., He, J., Wang, H.W., Wang, J., Zhu, J.K., Shi, Y., Yan, N.

Citation:

Structural basis for the modular recognition of single-stranded RNA by PPR proteins.
Nature pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.46Å R work:0.259R free:0.287

Equivalence Class: 

NR_all_00408.1 

Eq. Class Rep:

4M59

NDB ID:

 NA2714

PDB ID:

4N2S 

Release:

2013-10-30

Title:

Crystal Structure of THA8 in complex with Zm1a-6 RNA

Classification:

SPLICING/RNA

Authors:

Ke, J., Chen, R.Z., Ban, T., Zhou, X.E., Gu, X., Tan, M.H., Chen, C., Kang, Y., Brunzelle, J.S., Zhu, J.K., Melcher, K., Xu, H.E.

Citation:

Structural basis for RNA recognition by a dimeric PPR-protein complex.
Nat.Struct.Mol.Biol. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.205R free:0.231

Equivalence Class: 

NR_all_67714.1 

Eq. Class Rep:

4N2S

NDB ID:

 NA2715

PDB ID:

4N2Q 

Release:

2013-10-30

Title:

Crystal structure of THA8 in complex with Zm4 RNA

Classification:

SPLICING/RNA

Authors:

Ke, J., Chen, R.Z., Ban, T., Zhou, X.E., Gu, X., Tan, M.H., Chen, C., Kang, Y., Brunzelle, J.S., Zhu, J.K., Melcher, K., Xu, H.E.

Citation:

Structural basis for RNA recognition by a dimeric PPR-protein complex.
Nat.Struct.Mol.Biol. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.204R free:0.257

Equivalence Class: 

NR_all_25178.1 

Eq. Class Rep:

4N2Q

NDB ID:

 2M12

PDB ID:

2M12 

Release:

2013-10-23

Title:

Solution structure of the ID3 stem loop of domain 1 of the ai5gamma group II intron

Classification:

RNA

Authors:

Popovic, M., Greenbaum, N.L.

Citation:

Role of helical constraints of the EBS1-IBS1 duplex of a group II intron on demarcation of the 5' splice site
RNA pp. - 2013

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_76337.1 

Eq. Class Rep:

2M12

NDB ID:

 NA2702

PDB ID:

4MDX 

Release:

2013-10-23

Title:

Crystal structure of Bacillus subtilis MazF in complex with RNA

Classification:

HYDROLASE/RNA

Authors:

Simanshu, D.K., Yamaguchi, Y., Park, J.H., Inouye, M., Patel, D.J.

Citation:

Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
Mol.Cell 52 pp.447 - 458 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.164R free:0.177

Equivalence Class: 

NR_all_61358.1 

Eq. Class Rep:

4MDX

NDB ID:

 NA2709

PDB ID:

4MGM 

Release:

2013-10-23

Title:

Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly

Classification:

RNA

Authors:

Grigg, J.C., Ke, A.

Citation:

Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
Structure 21 pp.2025 - 2032 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.247R free:0.261

Equivalence Class: 

NR_all_56105.1 

Eq. Class Rep:

4MGM

NDB ID:

 NA2710

PDB ID:

4MGN 

Release:

2013-10-23

Title:

Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA

Classification:

RNA

Authors:

Grigg, J.C., Ke, A.

Citation:

Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
Structure 21 pp.2025 - 2032 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.236R free:0.278

Equivalence Class: 

NR_all_09043.1 

Eq. Class Rep:

4MGN

NDB ID:

 NA2557

PDB ID:

4KZ2 

Release:

2013-10-16

Title:

Crystal Structure of phi29 pRNA 3WJ Core

Classification:

RNA

Authors:

Zhang, H., Endrizzi, J.A., Shu, Y., Haque, F., Sauter, C., Shlyakhtenko, L.S., Lyubchenko, Y., Guo, P., Chi, Y.I.

Citation:

Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA.
Rna 19 pp.1226 - 1237 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.05Å R work:0.196R free:0.196

Equivalence Class: 

NR_all_97408.1 

Eq. Class Rep:

4KZ2

NDB ID:

 NA2703

PDB ID:

4MEG 

Release:

2013-10-16

Title:

In vitro evolved glmS ribozyme triple mutant, magnesium ion complex

Classification:

RNA

Authors:

Lau, M.W., Ferre-D'Amare, A.R.

Citation:

An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence.
Nat.Chem.Biol. 9 pp.805 - 810 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.252

Equivalence Class: 

NR_all_73572.2 

Eq. Class Rep:

2HO7

NDB ID:

 NA2704

PDB ID:

4MEH 

Release:

2013-10-16

Title:

In vitro evolved glmS ribozyme triple mutant, calcium ion complex

Classification:

RNA

Authors:

Lau, M.W., Ferre-D'Amare, A.R.

Citation:

An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence.
Nat.Chem.Biol. 9 pp.805 - 810 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.12Å R work:0.231R free:0.273

Equivalence Class: 

NR_all_73572.2 

Eq. Class Rep:

2HO7

NDB ID:

 4BY9

PDB ID:

4BY9 

Release:

2013-10-09

Title:

The structure of the Box CD enzyme reveals regulation of rRNA methylation

Classification:

TRANSFERASE/RNA

Authors:

Lapinaite, A., Simon, B., Skjaerven, L., Rakwalska-Bange, M., Gabel, F., Carlomagno, T.

Citation:

The Structure of the Box C/D Enzyme Reveals Regulation of RNA Methylation.
Nature 502 pp.519 - 2013

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_11298.1 

Eq. Class Rep:

4BY9

NDB ID:

 NA2391

PDB ID:

4KHS 

Release:

2013-10-09

Title:

Ternary complex of RB69 mutant L415F with a ribonucleotide at 0 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.12Å R work:0.176R free:0.216

NDB ID:

 NA2392

PDB ID:

4KHU 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.05Å R work:0.207R free:0.246

NDB ID:

 NA2393

PDB ID:

4KHW 

Release:

2013-10-09

Title:

Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.371Å R work:0.171R free:0.224

NDB ID:

 NA2394

PDB ID:

4KHY 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant L415F with ribonucleotide at -3 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.25Å R work:0.197R free:0.24

NDB ID:

 NA2395

PDB ID:

4KI4 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant L415F with ribonucleotides at 0 and -1 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.45Å R work:0.191R free:0.22

NDB ID:

 NA2396

PDB ID:

4KI6 

Release:

2013-10-09

Title:

Ternary complex of rb69 mutant l415f with ribonucleotides at -1 and -2 position

Classification:

TRANSFERASE/DNA

Authors:

Clausen, A.R., Murray, M.S., Passer, A.R., Pedersen, L.C., Kunkel, T.A.

Citation:

Structure-function analysis of ribonucleotide bypass by B family DNA replicases.
Proc.Natl.Acad.Sci.USA 110 pp.16802 - 16807 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.195R free:0.232

NDB ID:

 NA2593

PDB ID:

4LJ0 

Release:

2013-10-09

Title:

Nab2 Zn fingers complexed with polyadenosine

Classification:

RNA BINDING PROTEIN

Authors:

Kuhlmann, S.I., Valkov, E., Stewart, M.

Citation:

Structural basis for the molecular recognition of polyadenosine RNA by Nab2 Zn fingers.
Nucleic Acids Res. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.194R free:0.206

Equivalence Class: 

NR_all_06443.1 

Eq. Class Rep:

4LJ0

NDB ID:

 NA2565

PDB ID:

4L8H 

Release:

2013-10-02

Title:

Bacteriophage Qbeta coat protein in complex with RNA operator hairpin

Classification:

STRUCTURAL PROTEIN

Authors:

Rumnieks, J., Tars, K.

Citation:

Crystal structure of the bacteriophage Q beta coat protein in complex with the RNA operator of the replicase gene.
J.Mol.Biol. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.252R free:0.288

Equivalence Class: 

NR_all_51797.1 

Eq. Class Rep:

4L8H

NDB ID:

 NA2039

PDB ID:

4H8K 

Release:

2013-09-25

Title:

Crystal structure of LC11-RNase H1 in complex with RNA/DNA hybrid

Classification:

Hydrolase/DNA/RNA

Authors:

Nguyen, T.N., You, D.J., Matsumoto, H., Kanaya, E., Koga, Y., Kanaya, S.

Citation:

Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid
J.Struct.Biol. 182 pp.144 - 154 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.206R free:0.277

Equivalence Class: 

NR_all_57780.1 

Eq. Class Rep:

4H8K

NDB ID:

 NA2699

PDB ID:

4BOC 

Release:

2013-09-25

Title:

Structure of mitochondrial RNA polymerase elongation complex

Classification:

TRANSCRIPTION

Authors:

Schwinghammer, K., Cheung, A.C.M., Morozov, Y.I., Agaronyan, K., Temiakov, D., Cramer, P.

Citation:

Structure of Human Mitochondrial RNA Polymerase Elongation Complex
Nat.Struct.Mol.Biol. 20 pp.1298 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:2.65Å R work:0.179R free:0.209

Equivalence Class: 

NR_all_05495.1 

Eq. Class Rep:

4BOC

NDB ID:

 NA2689

PDB ID:

4BWM 

Release:

2013-09-18

Title:

KlenTaq mutant in complex with a RNA/DNA hybrid

Classification:

TRANSFERASE/DNA/RNA

Authors:

Blatter, N., Bergen, K., Welte, W., Diederichs, K., Marx, A.

Citation:

Klentaq Mutant in Complex with DNA and ddCTP
Angew.Chem.Int.Ed.Engl. pp. - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.749Å R work:0.167R free:0.207

Equivalence Class: 

NR_all_85939.1 

Eq. Class Rep:

4BWM

NDB ID:

 NA2665

PDB ID:

4BXX 

Release:

2013-09-11

Title:

Structures of RNA polymerase II complexes with Bye1, a chromatin- binding PHF3 DIDO homologue

Classification:

TRANSCRIPTION

Authors:

Kinkelin, K., Wozniak, G.G., Rothbart, S.B., Lidschreiber, M., Strahl, B.D., Cramer, P.

Citation:

Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
Proc.Natl.Acad.Sci.USA 110 pp.15277 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.28Å R work:0.179R free:0.207

Equivalence Class: 

NR_all_59728.1 

Eq. Class Rep:

4BXX

NDB ID:

 NA2666

PDB ID:

4BY1 

Release:

2013-09-11

Title:

elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP

Classification:

TRANSCRIPTION

Authors:

Kinkelin, K., Wozniak, G.G., Rothbart, S.B., Lidschreiber, M., Strahl, B.D., Cramer, P.

Citation:

Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
Proc.Natl.Acad.Sci.USA 110 pp.15277 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.6Å R work:0.174R free:0.206

Equivalence Class: 

NR_all_91301.2 

Eq. Class Rep:

1RRR

NDB ID:

 NA2667

PDB ID:

4BY7 

Release:

2013-09-11

Title:

elongating RNA Polymerase II-Bye1 TLD complex

Classification:

TRANSCRIPTION

Authors:

Kinkelin, K., Wozniak, G.G., Rothbart, S.B., Lidschreiber, M., Strahl, B.D., Cramer, P.

Citation:

Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
Proc.Natl.Acad.Sci.USA 110 pp.15277 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.15Å R work:0.189R free:0.211

Equivalence Class: 

NR_all_91301.2 

Eq. Class Rep:

1RRR

NDB ID:

 NA2298

PDB ID:

4JIY 

Release:

2013-09-04

Title:

RNA three-way junction stabilized by a supramolecular di-iron(II) cylinder drug

Classification:

RNA

Authors:

Phongtongpasuk, S., Paulus, S., Schnabl, J., Sigel, R.K., Spingler, B., Hannon, M.J., Freisinger, E.

Citation:

Binding of a designed anti-cancer drug to the central cavity of an RNA three-way junction.
Angew.Chem.Int.Ed.Engl. 52 pp.11513 - 11516 2013

Experiment:

 X-RAY DIFFRACTION Resolution:1.91Å R work:0.224R free:0.27

Equivalence Class: 

NR_all_52369.1 

Eq. Class Rep:

4JIY

NDB ID:

 NA2445

PDB ID:

4KJI 

Release:

2013-09-04

Title:

Novel re-arrangement of an RsmA/cSRa family protein to create a structurally distinct new RNA-binding family member

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Morris, E.R., Hall, G., Li, C., Heeb, S., Kulkarni, R.V., Lovelock, L., Silistre, H., Messina, M., Camara, M., Emsley, J., Williams, P., Searle, M.S.

Citation:

Structural Rearrangement in an RsmA/CsrA Ortholog of Pseudomonas aeruginosa Creates a Dimeric RNA-Binding Protein, RsmN.
Structure 21 pp.1659 - 1671 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.222R free:0.317

Equivalence Class: 

NR_all_07632.1 

Eq. Class Rep:

4KJI

NDB ID:

 NA2635

PDB ID:

4BYB 

Release:

2013-08-28

Title:

Structure of Thermus thermophilus 30s ribosome

Classification:

RIBOSOME

Authors:

Feng, S., Chen, Y., Kamada, K., Wang, H., Tang, K., Wang, M., Gao, Y.

Citation:

Yoeb-Ribosome Structure: A Canonical Rnase that Requires the Ribosome for its Specific Activity.
Nucleic Acids Res. 41 pp.9549 - 2013

Experiment:

 X-RAY DIFFRACTION Resolution:3.35Å R work:0.223R free:0.261

Equivalence Class: 

NR_all_42982.22 

Eq. Class Rep:

1FJG

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