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As of 13-Feb-2019 number of released structures: 10032
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4908  Download results as an excel file       Gallery view

NDB ID:

6N8F

PDB ID:

6N8F 

Release:

2019-02-13

Title:

RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG

Classification:

RNA

Authors:

Berger, K.D., Kennedy, S.D., Turner, D.H.

Citation:

Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6N8H

PDB ID:

6N8H 

Release:

2019-02-13

Title:

RNA Duplex containing the internal loop 5'-GCAU/3'-UACG

Classification:

RNA

Authors:

Berger, K.D., Kennedy, S.D., Turner, D.H.

Citation:

Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

6N8I

PDB ID:

6N8I 

Release:

2019-02-13

Title:

RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU

Classification:

RNA

Authors:

Berger, K.D., Kennedy, S.D., Turner, D.H.

Citation:

Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry pp. - 2019

Experiment:

SOLUTION NMR

NDB ID:

5Z71

PDB ID:

5Z71 

Release:

2019-01-30

Title:

Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)

Classification:

RNA

Authors:

Kanazawa, H., Tsurumi, N., Baasov, T., Kondo, J.

Citation:

Structural studies of aminoglycoside antibiotics G418 and its derivatives with readthrough activities
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.269R free:0.305

NDB ID:

5ZSA

PDB ID:

5ZSA 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with IMDQ and UUUUUU

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.198R free:0.249

NDB ID:

5ZSB

PDB ID:

5ZSB 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with IMDQ and AAUUAA

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.191R free:0.251

NDB ID:

5ZSC

PDB ID:

5ZSC 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with IMDQ and CCUUCC

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.191R free:0.227

NDB ID:

5ZSD

PDB ID:

5ZSD 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with IMDQ and GGUUGG

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.603Å R work:0.19R free:0.233

NDB ID:

5ZSE

PDB ID:

5ZSE 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with IMDQ and GGUCCC

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.201Å R work:0.195R free:0.232

NDB ID:

5ZSL

PDB ID:

5ZSL 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with GGUUGG

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.217R free:0.258

NDB ID:

5ZSM

PDB ID:

5ZSM 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with GGUCCC

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.228R free:0.273

NDB ID:

5ZSN

PDB ID:

5ZSN 

Release:

2019-01-30

Title:

Crystal structure of monkey TLR7 in complex with AAUUAA

Classification:

IMMUNE SYSTEM

Authors:

Shimizu, T.

Citation:

To be published
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.202R free:0.245

NDB ID:

6FHH

PDB ID:

6FHH 

Release:

2019-01-30

Title:

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter bound to a 22-mer modified Pol II CTD peptide with serine 5 thiophosphorylated.

Classification:

VIRAL PROTEIN

Authors:

Claron, M., Lukarska, M., Uhrig, U., Sehr, P., Drncova, P., Lewis, J.D., Will, D.W., Cusack, S.

Citation:

Towards New Anti-Influenza Therapeutics: Structure-Activity Relationships in the Interaction between Heterotrimeric Influenza Polymerase and Pol II C-terminal domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.212R free:0.257

NDB ID:

6FHI

PDB ID:

6FHI 

Release:

2019-01-30

Title:

Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter bound to a 19-mer serine 5 phosphorylated Pol II CTD peptide with a truncated linker.

Classification:

VIRAL PROTEIN

Authors:

Claron, M., Lukarska, M., Uhrig, U., Sehr, P., Drncova, P., Lewis, J.D., Will, D.W., Cusack, S.

Citation:

Towards New Anti-Influenza Therapeutics: Structure-Activity Relationships in the Interaction between Heterotrimeric Influenza Polymerase and Pol II C-terminal domain
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.23R free:0.269

NDB ID:

6GC5

PDB ID:

6GC5 

Release:

2019-01-30

Title:

Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM

Classification:

RNA BINDING PROTEIN

Authors:

Ripin, N., Boudet, J., Duszczyk, M.M., Hinniger, A., Faller, M., Krepl, M., Gadi, A., Schneider, R.J., Sponer, J., Meisner-Kober, N.C., Allain, F.H.

Citation:

Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.2R free:0.231

NDB ID:

6NOC

PDB ID:

6NOC 

Release:

2019-01-30

Title:

Crystal structure of FBF-2 repeat 5 mutant (C363A, R364Y) in complex with 8-nt RNA

Classification:

rna binding protein/rna

Authors:

Bhat, V.D., McCann, K.L., Wang, Y., Fonseca, D.R., Shukla, T., Alexander, J.C., Qiu, C., Wickens, M., Lo, T.W., Tanaka Hall, T.M., Campbell, Z.T.

Citation:

Engineering a conserved RNA regulatory protein repurposes its biological functionin vivo.
Elife 8 pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.849Å R work:0.219R free:0.277

NDB ID:

6NOD

PDB ID:

6NOD 

Release:

2019-01-30

Title:

Crystal structure of C. elegans PUF-8 in complex with RNA

Classification:

rna binding protein/rna

Authors:

Bhat, V.D., McCann, K.L., Wang, Y., Fonseca, D.R., Shukla, T., Alexander, J.C., Qiu, C., Wickens, M., Lo, T.W., Tanaka Hall, T.M., Campbell, Z.T.

Citation:

Engineering a conserved RNA regulatory protein repurposes its biological functionin vivo.
Elife 8 pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.547Å R work:0.229R free:0.285

NDB ID:

6NOF

PDB ID:

6NOF 

Release:

2019-01-30

Title:

Crystal structure of FBF-2 repeat 5 mutant (C363A, R364Y, Q367S) in complex with 8-nt RNA

Classification:

rna binding protein/rna

Authors:

Bhat, V.D., McCann, K.L., Wang, Y., Fonseca, D.R., Shukla, T., Alexander, J.C., Qiu, C., Wickens, M., Lo, T.W., Tanaka Hall, T.M., Campbell, Z.T.

Citation:

Engineering a conserved RNA regulatory protein repurposes its biological functionin vivo.
Elife 8 pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.251Å R work:0.164R free:0.222

NDB ID:

6NOH

PDB ID:

6NOH 

Release:

2019-01-30

Title:

Crystal structure of FBF-2 repeat 5 mutant (C363S, R364Y, Q367S) in complex with 8-nt RNA

Classification:

rna binding protein/rna

Authors:

Bhat, V.D., McCann, K.L., Wang, Y., Fonseca, D.R., Shukla, T., Alexander, J.C., Qiu, C., Wickens, M., Lo, T.W., Tanaka Hall, T.M., Campbell, Z.T.

Citation:

Engineering a conserved RNA regulatory protein repurposes its biological functionin vivo.
Elife 8 pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.249Å R work:0.158R free:0.205

NDB ID:

6I1K

PDB ID:

6I1K 

Release:

2019-01-23

Title:

Crystal structure of catalytically inactive FnCas12a in complex with a crRNA guide and a dsDNA target

Classification:

HYDROLASE

Authors:

Swarts, D.C., Jinek, M.

Citation:

Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.
Mol. Cell pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.248R free:0.263

NDB ID:

6I1L

PDB ID:

6I1L 

Release:

2019-01-23

Title:

Crystal structure of FnCas12a in complex with a crRNA guide and ssDNA target

Classification:

HYDROLASE

Authors:

Swarts, D.C., Jinek, M.

Citation:

Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.
Mol. Cell pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.98Å R work:0.203R free:0.231

NDB ID:

6IFO

PDB ID:

6IFO 

Release:

2019-01-23

Title:

Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Liu, L., Yin, M., Wang, M., Wang, Y.

Citation:

Phage AcrIIA2 DNA Mimicry: Structural Basis of the CRISPR and Anti-CRISPR Arms Race.
Mol. Cell pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.313Å R work:0.222R free:0.268

NDB ID:

5ZC9

PDB ID:

5ZC9 

Release:

2019-01-16

Title:

Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex

Classification:

TRANSLATION/RNA

Authors:

Iwasaki, S., Iwasaki, W., Takahashi, M., Sakamoto, A., Watanabe, C., Shichino, Y., Floor, S.N., Fujiwara, K., Mito, M., Dodo, K., Sodeoka, M., Imataka, H., Honma, T., Fukuzawa, K., Ito, T., Ingolia, N.T.

Citation:

The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA.
Mol. Cell pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.192R free:0.23

NDB ID:

6BJG

PDB ID:

6BJG 

Release:

2019-01-16

Title:

CIRV p19 mutant T111H in complex with siRNA

Classification:

RNA BINDING PROTEIN

Authors:

Foss, D.V., Schirle, N.T., MacRae, I.J., Pezacki, J.P.

Citation:

Structural examination of p19 mutants with high affinity for human miRNA-122
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.29Å R work:0.212R free:0.257

NDB ID:

6BJH

PDB ID:

6BJH 

Release:

2019-01-16

Title:

CIRV p19 mutant T111S in complex with siRNA

Classification:

RNA BINDING PROTEIN

Authors:

Foss, D.V., Schirle, N.T., MacRae, I.J., Pezacki, J.P.

Citation:

Structural examination of p19 mutants with high affinity for human miRNA-122.
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.58Å R work:0.224R free:0.277

NDB ID:

6BJV

PDB ID:

6BJV 

Release:

2019-01-16

Title:

CIRV p19 protein in complex with siRNA

Classification:

RNA BINDING PROTEIN

Authors:

Foss, D.V., Schirle, N.T., MacRae, I.J., Pezacki, J.P.

Citation:

Structural examination of p19 mutants with high affinity for human miRNA-122
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.198Å R work:0.259R free:0.297

NDB ID:

6C27

PDB ID:

6C27 

Release:

2019-01-09

Title:

SAM-III riboswitch ON-state

Classification:

RNA

Authors:

Price, I.R., Grigg, J.C., Martell, D.J., Ding, F., Peng, C., Ke, A.

Citation:

Evidence for two-tiered conformation selection in the SAM-III riboswitch
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.601Å R work:0.21R free:0.243

NDB ID:

6HAG

PDB ID:

6HAG 

Release:

2019-01-09

Title:

The structure of the SAM/SAH-binding riboswitch.

Classification:

RNA

Authors:

Weickhmann, A.K., Keller, H., Wurm, J.P., Strebitzer, E., Juen, M.A., Kremser, J., Weinberg, Z., Kreutz, C., Duchardt-Ferner, E., Wohnert, J.

Citation:

The structure of the SAM/SAH-binding riboswitch.
Nucleic Acids Res. pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6MJ0

PDB ID:

6MJ0 

Release:

2019-01-09

Title:

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

Classification:

RNA

Authors:

Hartwick, E.W., Costantino, D.A., MacFadden, A., Nix, J.C., Tian, S., Das, R., Kieft, J.S.

Citation:

Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels.
Nat Commun 9 pp.5074 - 5074 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.226R free:0.266

NDB ID:

5OC6

PDB ID:

5OC6 

Release:

2018-12-26

Title:

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA

Classification:

RNA BINDING PROTEIN

Authors:

Bou-Nader, C., Barraud, P., Pecqueur, L., Perez, J., Velours, C., Shepard, W., Fontecave, M., Tisne, C., Hamdane, D.

Citation:

Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
Nucleic Acids Res. pp. - 2019

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.225R free:0.241

NDB ID:

6DCB

PDB ID:

6DCB 

Release:

2018-12-19

Title:

Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA

Classification:

Transferase/RNA

Authors:

Yang, Y., Eichhorn, C.D., Wang, Y., Cascio, D., Feigon, J.

Citation:

Structural basis of 7SK RNA 5'-gamma-phosphate methylation and retention by MePCE.
Nat. Chem. Biol. 15 pp.132 - 140 2019

Experiment:

X-RAY DIFFRACTION Resolution:1.998Å R work:0.159R free:0.178

NDB ID:

6DCC

PDB ID:

6DCC 

Release:

2018-12-19

Title:

Structure of methylphosphate capping enzyme methyltransferase domain in complex with 5' end of 7SK RNA

Classification:

Transferase/RNA

Authors:

Yang, Y., Eichhorn, C.D., Wang, Y., Cascio, D., Feigon, J.

Citation:

Structural basis of 7SK RNA 5'-gamma-phosphate methylation and retention by MePCE.
Nat. Chem. Biol. 15 pp.132 - 140 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.174R free:0.198

NDB ID:

5YYN

PDB ID:

5YYN 

Release:

2018-12-12

Title:

Crystal structures of E.coli arginyl-trna synthetase (argrs) in complex with substrate TRNA(Arg)

Classification:

LIGASE/RNA

Authors:

Zhou, M., Ye, S., Stephen, P., Zhang, R.G., Wang, E.D., Giege, R., Lin, S.X.

Citation:

Crystal Structures Of E.Coli Arginyl-Trna Synthetase (Argrs) In Complex With Substrates
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.219R free:0.268

Equivalence Class: 

NR_all_55114.1 

Eq. Class Rep:

5B63

NDB ID:

6CYT

PDB ID:

6CYT 

Release:

2018-12-12

Title:

HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb

Classification:

TRANSCRIPTION/RNA

Authors:

Schulze-Gahmen, U., Hurley, J.H.

Citation:

Structural mechanism for HIV-1 TAR loop recognition by Tat and the super elongation complex.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.12973 - 12978 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.247R free:0.282

Equivalence Class: 

NR_all_82132.1 

Eq. Class Rep:

6CMN

NDB ID:

6D2U

PDB ID:

6D2U 

Release:

2018-12-12

Title:

Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA

Classification:

Peptide/RNA

Authors:

Shortridge, M.D., Wille, P.T., Jones, A.N., Davidson, A., Bogdanovic, J., Arts, E., Karn, J., Robinson, J.A., Varani, G.

Citation:

An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb.
Nucleic Acids Res. pp. - 2018

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_82132.1 

Eq. Class Rep:

6CMN

NDB ID:

6E4P

PDB ID:

6E4P 

Release:

2018-12-12

Title:

Structure of the T. brucei RRM domain in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Travis, B., Shaw, P.L.R., Liu, B., Ravindra, K., Iliff, H., Al-Hashimi, H.M., Schumacher, M.A.

Citation:

The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.949Å R work:0.18R free:0.228

Equivalence Class: 

NR_all_96683.4 

Eq. Class Rep:

5Z4J

NDB ID:

6IFN

PDB ID:

6IFN 

Release:

2018-12-12

Title:

Crystal structure of Type III-A CRISPR Csm complex

Classification:

RNA BINDING PROTEIN

Authors:

You, L., Ma, J., Wang, J., Artamonova, D., Wang, M., Liu, L., Xiang, H., Severinov, K., Zhang, X., Wang, Y.

Citation:

Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference
Cell 176 pp.239 - 253.e16 2019

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.201R free:0.244

Equivalence Class: 

NR_all_80808.1 

Eq. Class Rep:

6IFN

NDB ID:

6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

Equivalence Class: 

NR_all_60049.2 

Eq. Class Rep:

3CD6

NDB ID:

6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

Equivalence Class: 

NR_all_65795.42 

Eq. Class Rep:

4LFB

NDB ID:

6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

Equivalence Class: 

NR_all_97519.37 

Eq. Class Rep:

4Y4O

NDB ID:

6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

Equivalence Class: 

NR_all_42622.37 

Eq. Class Rep:

5FDV

NDB ID:

6N9E

PDB ID:

6N9E 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.277

Equivalence Class: 

NR_all_35542.55 

Eq. Class Rep:

5L4O

NDB ID:

6N9F

PDB ID:

6N9F 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.279

Equivalence Class: 

NR_all_65795.42 

Eq. Class Rep:

4LFB

NDB ID:

6N9F

PDB ID:

6N9F 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.279

Equivalence Class: 

NR_all_97519.37 

Eq. Class Rep:

4Y4O

NDB ID:

6N9F

PDB ID:

6N9F 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.279

Equivalence Class: 

NR_all_42622.37 

Eq. Class Rep:

5FDV

NDB ID:

6N9F

PDB ID:

6N9F 

Release:

2018-12-12

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Classification:

RIBOSOME

Authors:

Melnikov, S.V., Khabibullina, N.F., Mairhofer, E., Vargas-Rodriguez, O., Reynolds, N.M., Micura, R., Soll, D., Polikanov, Y.S.

Citation:

Mechanistic insights into the slow peptide bond formation with D-amino acids in the ribosomal active site.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.236R free:0.279

Equivalence Class: 

NR_all_35542.55 

Eq. Class Rep:

5L4O

NDB ID:

5YTS

PDB ID:

5YTS 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCUUCU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CUUC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.77Å R work:0.187R free:0.226

Equivalence Class: 

NR_all_32973.1 

Eq. Class Rep:

5YTS

NDB ID:

5YTT

PDB ID:

5YTT 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAUGU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.182R free:0.217

Equivalence Class: 

NR_all_50496.1 

Eq. Class Rep:

5YTT

NDB ID:

5YTV

PDB ID:

5YTV 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAUCU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Yang, X., Huang, Y.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CAUC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.196R free:0.227

Equivalence Class: 

NR_all_23427.1 

Eq. Class Rep:

5YTV

NDB ID:

5YTX

PDB ID:

5YTX 

Release:

2018-12-05

Title:

Crystal structure of YB1 cold-shock domain in complex with UCAACU

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Huang, Y., Yang, X.

Citation:

Crystal structure of YB1 cold-shock domain in complex with CAAC
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.551Å R work:0.2R free:0.24

Equivalence Class: 

NR_all_82993.1 

Eq. Class Rep:

5YTX