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As of 28-Sep-2016 number of released structures: 8524
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3150  Download results as an excel file       Gallery view

NDB ID:

 2NCI

PDB ID:

2NCI 

Release:

2016-09-28

Title:

RNA Bulge Loop that Specifically Binds Metal Ions

Classification:

RNA

Authors:

Gu, X., Park, S.Y., Tonelli, M., Cornilescu, G., Xia, T., Zhong, D., Schroeder, S.J.

Citation:

NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions.
J Phys Chem Lett pp.3841 - 3846 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5D0A

PDB ID:

5D0A 

Release:

2016-09-28

Title:

Crystal structure of epoxyqueuosine reductase with cleaved RNA stem loop

Classification:

oxidoreductase/RNA

Authors:

Dowling, D.P., Miles, Z.D., Kohrer, C., Maiocco, S.J., Elliott, S.J., Bandarian, V., Drennan, C.L.

Citation:

Molecular basis of cobalamin-dependent RNA modification
Nucleic Acids Res. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.1Å R work:0.184R free:0.224

NDB ID:

 5D0B

PDB ID:

5D0B 

Release:

2016-09-28

Title:

Crystal structure of epoxyqueuosine reductase with a tRNA-TYR epoxyqueuosine-modified tRNA stem loop

Classification:

oxidoreductase/RNA

Authors:

Dowling, D.P., Miles, Z.D., Kohrer, C., Maiocco, S.J., Elliott, S.J., Bandarian, V., Drennan, C.L.

Citation:

Molecular basis of cobalamin-dependent RNA modification
Nucleic Acids Res. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.645Å R work:0.191R free:0.221

NDB ID:

 5FJ0

PDB ID:

5FJ0 

Release:

2016-09-28

Title:

Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. 44 pp.5390 - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.202R free:0.237

NDB ID:

 5G4T

PDB ID:

5G4T 

Release:

2016-09-28

Title:

The structure of a quasi-cyclic six k-turn duplex RNA species

Classification:

RNA

Authors:

Huang, L., Lilley, D.M.J.

Citation:

A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale 8 pp.15189 - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.751Å R work:0.194R free:0.234

NDB ID:

 5G4U

PDB ID:

5G4U 

Release:

2016-09-28

Title:

Association of three two-k-turn units based on Kt-7 3bU,3nU, forming a triangular-shaped structure

Classification:

RNA/PROTEIN

Authors:

Huang, L., Lilley, D.M.J.

Citation:

A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale 8 pp.15189 - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.65Å R work:0.229R free:0.257

NDB ID:

 5G4V

PDB ID:

5G4V 

Release:

2016-09-28

Title:

Association of four two-k-turn units based on Kt-7 3bG,3nC, forming a square-shaped structure

Classification:

DNA BINDING

Authors:

Huang, L., Lilley, D.M.J.

Citation:

A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale 8 pp.15189 - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.87Å R work:0.211R free:0.273

NDB ID:

 5JRC

PDB ID:

5JRC 

Release:

2016-09-28

Title:

Crystal structure of NeC3PO in complex with ssRNA.

Classification:

DNA BINDING PROTEIN

Authors:

Zhang, J., Liu, H., Yao, Q., Yu, X., Chen, Y., Cui, R., Wu, B., Zheng, L., Zuo, J., Huang, Z., Ma, J., Gan, J.

Citation:

Structural basis for single-stranded RNA recognition and cleavage by C3PO
Nucleic Acids Res. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:1.9Å R work:0.205R free:0.229

NDB ID:

 5T8Y

PDB ID:

5T8Y 

Release:

2016-09-28

Title:

Structure of epoxyqueuosine reductase from Bacillus subtilis with the Asp134 catalytic loop swung out of the active site.

Classification:

OXIDOREDUCTASE/RNA

Authors:

Dowling, D.P., Miles, Z.D., Kohrer, C., Maiocco, S.J., Elliott, S.J., Bandarian, V., Drennan, C.L.

Citation:

Molecular basis of cobalamin-dependent RNA modification
Nucleic Acids Res. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.653Å R work:0.237R free:0.266

NDB ID:

 5DO5

PDB ID:

5DO5 

Release:

2016-09-21

Title:

Crystal Structure of 2'-Fluoro-RNA bearing a phosphorodithioate

Classification:

RNA

Authors:

Pallan, P.S., Egli, M.

Citation:

Crystal Structure of 2'-Fluoro-RNA bearing a phosphorodithioate
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.2Å R work:0.189R free:0.229

NDB ID:

 5E08

PDB ID:

5E08 

Release:

2016-09-21

Title:

Specific Recognition of a Single-stranded RNA Sequence by an Engineered Synthetic Antibody Fragment

Classification:

Immune system/RNA

Authors:

Shao, Y., Huang, H., Qin, D., Li, N.S., Koide, A., Staley, J.P., Koide, S., Kossiakoff, A.A., Piccirilli, J.A.

Citation:

Specific Recognition of a Single-stranded RNA Sequence by a Synthetic Antibody Fragment.
J.Mol.Biol. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.38Å R work:0.209R free:0.233

NDB ID:

 5SWM

PDB ID:

5SWM 

Release:

2016-09-21

Title:

BACILLUS HALODURANS RNASE H MUTANT D132N IN COMPLEX WITH 12-MER FRNA/DNA HYBRID

Classification:

HYDROLASE/RNA/DNA

Authors:

Pallan, P.S., Prakash, T.P., De Leon, A.R., Egli, M.

Citation:

Limits of RNA 2'-OH Mimicry by Fluorine: Crystal Structure of Bacillus halodurans RNase H Bound to a 2'F-RNA:DNA Hybrid.
Biochemistry pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.16R free:0.185

NDB ID:

 5D6G

PDB ID:

5D6G 

Release:

2016-09-14

Title:

CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII

Classification:

TRANSLATION

Authors:

Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.

Citation:

CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.3Å R work:0.245R free:0.298

NDB ID:

 5DAR

PDB ID:

5DAR 

Release:

2016-09-14

Title:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Classification:

RIBOSOMAL PROTEIN

Authors:

Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.

Citation:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.264R free:0.296

NDB ID:

 5DO4

PDB ID:

5DO4 

Release:

2016-09-14

Title:

Thrombin-RNA aptamer complex

Classification:

Hydrolase/RNA

Authors:

Abeydeera, N.D., Egli, M., Cox, N., Mercier, K., Conde, J.N., Pallan, P.S., Mizurini, D.M., Sierant, M., Hibti, F.E., Hassell, T., Wang, T., Liu, F.W., Liu, H.M., Martinez, C., Sood, A.K., Lybrand, T.P., Frydman, C., Monteiro, R.Q., Gomer, R.H., Nawrot, B., Yang, X.

Citation:

Evoking picomolar binding in RNA by a single phosphorodithioate linkage.
Nucleic Acids Res. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:1.859Å R work:0.188R free:0.223

NDB ID:

 5GIN

PDB ID:

5GIN 

Release:

2016-09-14

Title:

Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates

Classification:

TRANSFERASE/RNA

Authors:

Yang, Z., Lin, J., Ye, K.

Citation:

Box C/D guide RNAs recognize maximal ten bases of substrates
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.308Å R work:0.25R free:0.303

NDB ID:

 5GIO

PDB ID:

5GIO 

Release:

2016-09-14

Title:

Crystal structure of box C/D RNP with 12 nt guide regions and 13 nt substrates

Classification:

TRANSFERASE/RNA

Authors:

Yang, Z., Lin, J., Ye, K.

Citation:

Box C/D guide RNAs recognize maximal ten bases of substrates
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.604Å R work:0.255R free:0.298

NDB ID:

 5GIP

PDB ID:

5GIP 

Release:

2016-09-14

Title:

Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates

Classification:

TRANSFERASE/RNA

Authors:

Yang, Z., Lin, J., Ye, K.

Citation:

Box C/D guide RNAs recognize maximal ten bases of substrates
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.129Å R work:0.178R free:0.233

NDB ID:

 4ZSN

PDB ID:

4ZSN 

Release:

2016-09-07

Title:

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Classification:

RIBOSOME

Authors:

Schureck, M.A., Repack, A., Miles, S.J., Marquez, J., Dunham, C.M.

Citation:

Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res. pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.6Å R work:0.198R free:0.233

NDB ID:

 5DAT

PDB ID:

5DAT 

Release:

2016-08-31

Title:

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Classification:

RIBOSOME

Authors:

Melnikov, S., Mailliot, J., Shin, B.-S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.15Å R work:0.203R free:0.252

NDB ID:

 5D8H

PDB ID:

5D8H 

Release:

2016-08-24

Title:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON

Classification:

RIBOSOMAL PROTEIN

Authors:

Gabdulkhakov, A.G., Mitroshin, I.V., Garber, M.B.

Citation:

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.208R free:0.245

NDB ID:

 5KGV

PDB ID:

5KGV 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KI7

PDB ID:

5KI7 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KIB

PDB ID:

5KIB 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KIE

PDB ID:

5KIE 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KIF

PDB ID:

5KIF 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KIH

PDB ID:

5KIH 

Release:

2016-08-24

Title:

Structural impact of single ribonucleotides in DNA

Classification:

DNA

Authors:

Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.

Citation:

Structural Impact of Single Ribonucleotide Residues in DNA.
Chembiochem pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KQE

PDB ID:

5KQE 

Release:

2016-08-24

Title:

Solution structure of P2a-J2a/b-P2b of medaka telomerase RNA

Classification:

RNA

Authors:

Wang, Y., Yesselman, J.D., Zhang, Q., Kang, M., Feigon, J.

Citation:

Structural conservation in the template/pseudoknot domain of vertebrate telomerase RNA from teleost fish to human.
Proc.Natl.Acad.Sci.USA 113 pp.E5125 - E5134 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5KX9

PDB ID:

5KX9 

Release:

2016-08-24

Title:

Selective Small Molecule Inhibition of the FMN Riboswitch

Classification:

RNA/inhibitor

Authors:

Howe, J.A., Xiao, L., Fischmann, T.O., Wang, H., Tang, H., Villafania, A., Zhang, R., Barbieri, C.M., Roemer, T.

Citation:

Atomic resolution mechanistic studies of ribocil: A highly selective unnatural ligand mimic of the E. coli FMN riboswitch.
Rna Biol. pp.1 - 9 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.216R free:0.251

NDB ID:

 5KL1

PDB ID:

5KL1 

Release:

2016-08-17

Title:

Crystal structure of the Pumilio-Nos-hunchback RNA complex

Classification:

RNA binding protein/RNA

Authors:

Weidmann, C.A., Qiu, C., Arvola, R.M., Lou, T.F., Killingsworth, J., Campbell, Z.T., Tanaka Hall, T.M., Goldstrohm, A.C.

Citation:

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.
Elife 5 pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.701Å R work:0.264R free:0.3

NDB ID:

 5KL8

PDB ID:

5KL8 

Release:

2016-08-17

Title:

Crystal structure of the Pumilio-Nos-CyclinB RNA complex

Classification:

RNA-binding protein/RNA

Authors:

Weidmann, C.A., Qiu, C., Arvola, R.M., Lou, T.F., Killingsworth, J., Campbell, Z.T., Tanaka Hall, T.M., Goldstrohm, A.C.

Citation:

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.
Elife 5 pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:4.0Å R work:0.282R free:0.311

NDB ID:

 5KLA

PDB ID:

5KLA 

Release:

2016-08-17

Title:

Crystal structure of the drosophila Pumilio RNA-binding domain in complex with hunchback RNA

Classification:

RNA-binding protein/RNA

Authors:

Weidmann, C.A., Qiu, C., Arvola, R.M., Lou, T.F., Killingsworth, J., Campbell, Z.T., Tanaka Hall, T.M., Goldstrohm, A.C.

Citation:

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.
Elife 5 pp. - 2016

Experiment:

 X-RAY DIFFRACTION Resolution:1.14Å R work:0.16R free:0.173

NDB ID:

 2N3O

PDB ID:

2N3O 

Release:

2016-08-10

Title:

Structure of PTB RRM1(41-163) bound to an RNA stemloop containing a structured loop derived from viral internal ribosomal entry site RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Maris, C., Jayne, S.F., Damberger, F.F., Ravindranathan, S., Allain, F.H.-T.

Citation:

C-terminal helix folding upon pyrimidine-rich hairpin binding to PTB RRM1. Implications for PTB function in Encephalomyocarditis virus IRES activity.
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2NBX

PDB ID:

2NBX 

Release:

2016-08-10

Title:

Solution structure of the J-K region of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2NBY

PDB ID:

2NBY 

Release:

2016-08-10

Title:

Solution structure of the J domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2NBZ

PDB ID:

2NBZ 

Release:

2016-08-10

Title:

Solution structure of the K domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2NC0

PDB ID:

2NC0 

Release:

2016-08-10

Title:

Solution structure of the St domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 2NC1

PDB ID:

2NC1 

Release:

2016-08-10

Title:

Solution structure of the delta-J-delta-K domain of EMCV IRES

Classification:

RNA

Authors:

Imai, S., Hellen, C., D'Souza, V., Wagner, G.

Citation:

An accurately pre-organized IRES RNA structure enables eIF4G capture for initiating viral translation
To be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 5D5L

PDB ID:

5D5L 

Release:

2016-08-10

Title:

PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+

Classification:

RNA

Authors:

Belashov, I.A., Liberman, J.A., Salim, M., Wedekind, J.E.

Citation:

Cesium(I) binding to G-U-wobble base pairs in preQ1 riboswitches with implications for crystallographic phasing
to be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.198R free:0.246

NDB ID:

 5KK5

PDB ID:

5KK5 

Release:

2016-08-10

Title:

AsCpf1(E993A)-crRNA-DNA ternary complex

Classification:

Hydrolase/DNA/RNA

Authors:

Gao, P., Yang, H., Rajashankar, K.R., Huang, Z., Patel, D.J.

Citation:

Type V CRISPR-Cas Cpf1 endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition.
Cell Res. 26 pp.901 - 913 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.289Å R work:0.216R free:0.254

NDB ID:

 2N6S

PDB ID:

2N6S 

Release:

2016-08-03

Title:

Structure of CssA4 (bottom stem) of CssA thermometer

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 2N6T

PDB ID:

2N6T 

Release:

2016-08-03

Title:

NMR Assignment and NMR Structure of CssA3 (top stem) of CssA thermometer

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 2N6W

PDB ID:

2N6W 

Release:

2016-08-03

Title:

NMR Assignment and structure of CssA Thermometer from Neisseria meningitidis

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 2N6X

PDB ID:

2N6X 

Release:

2016-08-03

Title:

NMR Assignment and structure of CssA5 (middle region) of CssA thermometer from Neisseria meningitidis

Classification:

RNA

Authors:

Barnwal, R.P., Loh, E., Godin, K.S., Yip, J., Lavender, H., Tang, C.M., Varani, G.

Citation:

Structure and mechanism of a molecular rheostat, an RNA thermometer that modulates immune evasion by Neisseria meningitidis.
Nucleic Acids Res. pp. - 2016

Experiment:

 SOLUTION NMR

NDB ID:

 5AXM

PDB ID:

5AXM 

Release:

2016-08-03

Title:

Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)

Classification:

Transferase/RNA

Authors:

Kimura, S., Suzuki, T., Chen, M., Kato, K., Yu, J., Nakamura, A., Tanaka, I., Yao, M.

Citation:

Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv 2 pp.e1501397 - e1501397 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.21Å R work:0.215R free:0.242

NDB ID:

 5AXN

PDB ID:

5AXN 

Release:

2016-08-03

Title:

Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP

Classification:

Transferase/RNA

Authors:

Kimura, S., Suzuki, T., Chen, M., Kato, K., Yu, J., Nakamura, A., Tanaka, I., Yao, M.

Citation:

Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv 2 pp.e1501397 - e1501397 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.703Å R work:0.225R free:0.267

NDB ID:

 5KVJ

PDB ID:

5KVJ 

Release:

2016-08-03

Title:

Crystal structure of the 16-mer doublestranded RNA. Northeast Structural Genomics Consortium (NESG) target RNA1

Classification:

RNA

Authors:

Vorobiev, S.M., Ma, L.-C., Montelione, G.T.

Citation:

Crystal structure of the 16-mer double stranded RNA.
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.261Å R work:0.193R free:0.233

NDB ID:

 5IT8

PDB ID:

5IT8 

Release:

2016-07-27

Title:

High-resolution structure of the Escherichia coli ribosome

Classification:

RIBOSOME

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.12Å R work:0.189R free:0.219

NDB ID:

 5J5B

PDB ID:

5J5B 

Release:

2016-07-27

Title:

Structure of the WT E coli ribosome bound to tetracycline

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

 X-RAY DIFFRACTION Resolution:2.8Å R work:0.209R free:0.218

NDB ID:

 5J7L

PDB ID:

5J7L 

Release:

2016-07-27

Title:

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Cocozaki, A.I., Altman, R.B., Huang, J., Buurman, E.T., Kazmirski, S.L., Doig, P., Prince, D.B., Blanchard, S.C., Cate, J.H., Ferguson, A.D.

Citation:

Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA 113 pp.8188 - 8193 2016

Experiment:

 X-RAY DIFFRACTION Resolution:3.0Å R work:0.172R free:0.193

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