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As of 14-Oct-2020 number of released structures: 11024
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5451  Download results as an excel file       Gallery view

NDB ID:

6NSH

PDB ID:

6NSH 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Subramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing
Elife pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.397Å R work:0.197R free:0.236

NDB ID:

6NTA

PDB ID:

6NTA 

Release:

2020-10-14

Title:

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Subramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing
Elife pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.244R free:0.274

NDB ID:

6NUO

PDB ID:

6NUO 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Subramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing
Elife pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.224R free:0.256

NDB ID:

6NWY

PDB ID:

6NWY 

Release:

2020-10-14

Title:

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Subramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing
Elife pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.24R free:0.257

NDB ID:

6O3M

PDB ID:

6O3M 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Subramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing
Elife pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.97Å R work:0.228R free:0.254

NDB ID:

6OSI

PDB ID:

6OSI 

Release:

2020-10-14

Title:

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Classification:

RIBOSOME

Authors:

Hoffer, E.D., Subramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

Citation:

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing
Elife pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:4.14Å R work:0.247R free:0.293

NDB ID:

6XH0

PDB ID:

6XH0 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.9

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.228R free:0.288

NDB ID:

6XH1

PDB ID:

6XH1 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.7 mutant

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.601Å R work:0.215R free:0.254

NDB ID:

6XH2

PDB ID:

6XH2 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM 6.6

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.71Å R work:0.191R free:0.209

NDB ID:

6XH3

PDB ID:

6XH3 

Release:

2020-10-14

Title:

Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM TBP6.3

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Chavali, S.S., Mali, S.M., Jenkins, J.L., Fasan, R., Wedekind, J.E.

Citation:

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.353Å R work:0.212R free:0.252

NDB ID:

6YRB

PDB ID:

6YRB 

Release:

2020-10-14

Title:

Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 7.5

Classification:

VIRAL PROTEIN

Authors:

Serris, A., Stass, R., Bignon, E.A., Muena, N.A., Manuguerra, J.C., Jangra, R.K., Li, S., Chandran, K., Tischler, N.D., Huiskonen, J.T., Rey, F.A., Guardado-Calvo, P.

Citation:

The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.351Å R work:0.225R free:0.265

NDB ID:

6YRQ

PDB ID:

6YRQ 

Release:

2020-10-14

Title:

Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 4.6

Classification:

VIRAL PROTEIN

Authors:

Serris, A., Stass, R., Bignon, E.A., Muena, N.A., Manuguerra, J.C., Jangra, R.K., Li, S., Chandran, K., Tischler, N.D., Huiskonen, J.T., Rey, F.A., Guardado-Calvo, P.

Citation:

The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.902Å R work:0.187R free:0.23

NDB ID:

7K16

PDB ID:

7K16 

Release:

2020-10-14

Title:

Tamana Bat Virus xrRNA1

Classification:

RNA

Authors:

Jones, R.A., Steckelberg, A.L., Vicens, Q., Szucs, M.J., Akiyama, B.M., Kieft, J.S.

Citation:

Different tertiary interactions create the same important 3-D features in a distinct flavivirus xrRNA.
Rna pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.186R free:0.246

NDB ID:

6SX0

PDB ID:

6SX0 

Release:

2020-10-07

Title:

Specific dsRNA recognition by wild type H7N1 NS1 RNA-binding domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.75Å R work:0.171R free:0.202

Equivalence Class: 

NR_all_48564.1 

Eq. Class Rep:

6SX2

NDB ID:

6SX2

PDB ID:

6SX2 

Release:

2020-10-07

Title:

dsRNA recognition by R38AK41A mutant of H7N1 NS1 RNA Binding Domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.167R free:0.191

Equivalence Class: 

NR_all_48564.1 

Eq. Class Rep:

6SX2

NDB ID:

6XLV

PDB ID:

6XLV 

Release:

2020-10-07

Title:

Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site

Classification:

RNA BINDING PROTEIN/SPLICING

Authors:

Maji, D., Jenkins, J.L., Kielkopf, C.L.

Citation:

Crystal structure of leukemia-associated N196K mutant of U2AF65 bound to AdML splice site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.4Å R work:0.141R free:0.168

Equivalence Class: 

NR_all_94195.1 

Eq. Class Rep:

6XLW

NDB ID:

6XLW

PDB ID:

6XLW 

Release:

2020-10-07

Title:

Crystal structure of U2AF65 bound to AdML splice site sequence

Classification:

RNA BINDING PROTEIN/SPLICING

Authors:

Maji, D., Jenkins, J.L., Kielkopf, C.L.

Citation:

Crystal structure of U2AF65 bound to AdML splice site sequence
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.13R free:0.153

Equivalence Class: 

NR_all_94195.1 

Eq. Class Rep:

6XLW

NDB ID:

6XLX

PDB ID:

6XLX 

Release:

2020-10-07

Title:

Crystal structure of cancer-associated G301D mutant of U2AF65 bound to AdML splice site

Classification:

RNA BINDING PROTEIN/SPLICING

Authors:

Maji, D., Jenkins, J.L., Kielkopf, C.L.

Citation:

Crystal structure of cancer-associated G301D mutant of U2AF65 bound to AdML splice site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.162R free:0.194

Equivalence Class: 

NR_all_94195.1 

Eq. Class Rep:

6XLW

NDB ID:

6ZLC

PDB ID:

6ZLC 

Release:

2020-10-07

Title:

Non-specific dsRNA recognition by wildtype H7N1 RNA-binding domain

Classification:

VIRAL PROTEIN

Authors:

Wacquiez, A., Coste, F., Kut, E., Gaudon, V., Trapp, S., Castaing, B., Marc, D.

Citation:

Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1.
Viruses 12 pp. - 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.19R free:0.22

Equivalence Class: 

NR_all_21658.1 

Eq. Class Rep:

2ZKO

NDB ID:

7JU1

PDB ID:

7JU1 

Release:

2020-10-07

Title:

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

Classification:

RNA

Authors:

Shi, H., Rangadurai, A., Abou-Assi, H., Roy, R., Case, D.A., Herschlag, D., Yesselman, J.D., Al-Hashimi, H.M.

Citation:

Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction
Nat Commun pp. - 2020

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_97403.1 

Eq. Class Rep:

7JU1

NDB ID:

6L0Y

PDB ID:

6L0Y 

Release:

2020-09-30

Title:

Structure of dsRNA with G-U wobble base pairs

Classification:

RNA

Authors:

Kim, K.-H., Hwang, J., Kim, J.H., Son, K.-P., Jang, Y., Kim, M., Kang, S.-J., Lee, J.-O., Choi, B.-S.

Citation:

Structure of dsRNA with G-U wobble base pairs
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.232R free:0.279

Equivalence Class: 

NR_all_70696.1 

Eq. Class Rep:

6L0Y

NDB ID:

6M6V

PDB ID:

6M6V 

Release:

2020-09-30

Title:

Cyystal structure the toxin-antitoxin MntA-HpeT

Classification:

ANTITOXIN

Authors:

Yao, J.Y., Zhen, X.K., Wang, X.

Citation:

A unique AMPylation mechanism of Toxin-Antitoxin pair in Bacteria and Archaea
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.08Å R work:0.22R free:0.276

Equivalence Class: 

NR_all_65223.4 

Eq. Class Rep:

6Q1H

NDB ID:

6TB7

PDB ID:

6TB7 

Release:

2020-09-30

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.53Å R work:0.203R free:0.237

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

7C06

PDB ID:

7C06 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.02Å R work:0.214R free:0.248

Equivalence Class: 

NR_all_26439.1 

Eq. Class Rep:

7C06

NDB ID:

7C06

PDB ID:

7C06 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.02Å R work:0.214R free:0.248

Equivalence Class: 

NR_all_68707.1 

Eq. Class Rep:

7C06

NDB ID:

7C06

PDB ID:

7C06 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.02Å R work:0.214R free:0.248

Equivalence Class: 

NR_all_86209.1 

Eq. Class Rep:

7C06

NDB ID:

7C07

PDB ID:

7C07 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 5'-AAGGU RNA.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.254R free:0.285

Equivalence Class: 

NR_all_02802.1 

Eq. Class Rep:

7C07

NDB ID:

7C07

PDB ID:

7C07 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 5'-AAGGU RNA.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.254R free:0.285

Equivalence Class: 

NR_all_03625.1 

Eq. Class Rep:

7C07

NDB ID:

7C07

PDB ID:

7C07 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 5'-AAGGU RNA.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.254R free:0.285

Equivalence Class: 

NR_all_63119.1 

Eq. Class Rep:

7C07

NDB ID:

7C07

PDB ID:

7C07 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 5'-AAGGU RNA.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.254R free:0.285

Equivalence Class: 

NR_all_67835.1 

Eq. Class Rep:

7C07

NDB ID:

7C07

PDB ID:

7C07 

Release:

2020-09-30

Title:

Crystal structure of yeast U2AF1 complex bound to 5'-AAGGU RNA.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.254R free:0.285

Equivalence Class: 

NR_all_93248.1 

Eq. Class Rep:

7C07

NDB ID:

7C08

PDB ID:

7C08 

Release:

2020-09-30

Title:

Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.214R free:0.252

Equivalence Class: 

NR_all_26439.1 

Eq. Class Rep:

7C06

NDB ID:

7C08

PDB ID:

7C08 

Release:

2020-09-30

Title:

Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.214R free:0.252

Equivalence Class: 

NR_all_68707.1 

Eq. Class Rep:

7C06

NDB ID:

7C08

PDB ID:

7C08 

Release:

2020-09-30

Title:

Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.214R free:0.252

Equivalence Class: 

NR_all_24667.1 

Eq. Class Rep:

7C08

NDB ID:

7C08

PDB ID:

7C08 

Release:

2020-09-30

Title:

Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.214R free:0.252

Equivalence Class: 

NR_all_65098.1 

Eq. Class Rep:

7C08

NDB ID:

7C08

PDB ID:

7C08 

Release:

2020-09-30

Title:

Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU.

Classification:

SPLICING/RNA

Authors:

Yoshida, H., Park, S.Y., Sakashita, G., Nariai, Y., Kuwasako, K., Muto, Y., Urano, T., Obayashi, E.

Citation:

Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Nat Commun 11 pp.4744 - 4744 2020

Experiment:

X-RAY DIFFRACTION Resolution:3.35Å R work:0.214R free:0.252

Equivalence Class: 

NR_all_80069.1 

Eq. Class Rep:

7C08

NDB ID:

6KYV

PDB ID:

6KYV 

Release:

2020-09-23

Title:

Crystal Structure of RIG-I and hairpin RNA with G-U wobble base pairs

Classification:

IMMUNE SYSTEM

Authors:

Kim, K.-H., Hwang, J., Kim, J.H., Son, K.-P., Jang, Y., Kim, M., Kang, S.-J., Lee, J.-O., Choi, B.-S.

Citation:

Structure of RIG-I dCARD and hairpin RNA with G-U wobble base pairs
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.222R free:0.274

Equivalence Class: 

NR_all_01689.1 

Eq. Class Rep:

6KYV

NDB ID:

6TF0

PDB ID:

6TF0 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.209R free:0.257

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TF1

PDB ID:

6TF1 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.215R free:0.244

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TF2

PDB ID:

6TF2 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.207R free:0.238

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TF3

PDB ID:

6TF3 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.66Å R work:0.211R free:0.241

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TFE

PDB ID:

6TFE 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.239R free:0.257

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TFF

PDB ID:

6TFF 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.52Å R work:0.213R free:0.225

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TFG

PDB ID:

6TFG 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.192R free:0.225

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6TFH

PDB ID:

6TFH 

Release:

2020-09-23

Title:

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+)

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna 26 pp.878 - 887 2020

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.221R free:0.266

Equivalence Class: 

NR_all_80360.2 

Eq. Class Rep:

6TFF

NDB ID:

6W3M

PDB ID:

6W3M 

Release:

2020-09-23

Title:

Solution NMR Structure of 5'UTR Stem Loop B in DENV4 Flavivirus.

Classification:

RNA

Authors:

Sharma, S., Varani, G.

Citation:

NMR structure of Dengue West Nile viruses stem-loop B: A key cis-acting element for flavivirus replication.
Biochem.Biophys.Res.Commun. 531 pp.522 - 527 2020

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_43471.1 

Eq. Class Rep:

6W3M

NDB ID:

7K1Z

PDB ID:

7K1Z 

Release:

2020-09-23

Title:

Solution structure of the HIV-1 PBS-segment

Classification:

RNA

Authors:

Song, Z., Heng, X.

Citation:

Structure of the HIV-1 PBS-segment is conserved for viral infectivity
To Be Published pp. - 0

Experiment:

SOLUTION NMR

Equivalence Class: 

NR_all_31583.1 

Eq. Class Rep:

6WB0

NDB ID:

7K1Z

PDB ID:

7K1Z 

Release:

2020-09-23

Title:

Solution structure of the HIV-1 PBS-segment

Classification:

RNA

Authors:

Song, Z., Heng, X.

Citation:

Structure of the HIV-1 PBS-segment is conserved for viral infectivity
To Be Published pp. - 0

Experiment:

SOLUTION SCATTERING

Equivalence Class: 

NR_all_31583.1 

Eq. Class Rep:

6WB0

NDB ID:

6KXZ

PDB ID:

6KXZ 

Release:

2020-09-16

Title:

HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 EPIRUBICIN (EPI) MOLECULES

Classification:

DNA

Authors:

Barthwal, R., Raje, S., Pandav, K.

Citation:

HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 EPIRUBICIN (DM6) MOLECULES
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

7JYY

PDB ID:

7JYY 

Release:

2020-09-16

Title:

Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).

Classification:

VIRAL PROTEIN/RNA

Authors:

Minasov, G., Shuvalova, L., Rosas-Lemus, M., Kiryukhina, O., Brunzelle, J.S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Citation:

Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.05Å R work:0.165R free:0.184

Equivalence Class: 

NR_all_11762.1 

Eq. Class Rep:

7JYY