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As of 1-Jul-2015 number of released structures: 7543
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 2761  Download results as an excel file       Gallery view

NDB ID:

5BS3

PDB ID:

5BS3 

Release:

2015-06-17

Title:

Crystal Structure of S.A. gyrase in complex with Compound 7

Classification:

Isomerase/DNA/RNA

Authors:

Singh, S.B., Kaelin, D.E., Wu, J., Miesel, L., Tan, C.M., Black, T., Nargund, R., Meinke, P.T., Olsen, D.B., Lagrutta, A., Lu, J., Patel, S., Rickert, K.W., Smith, R.F., Soisson, S., Sherer, E., Joyce, L.A., Wei, C., Peng, X., Wang, X., Fukuda, H., Kishii, R., Takei, M., Takano, H., Shibasaki, M., Yajima, M., Nishimura, A., Shibata, T., Fukuda, Y.

Citation:

Tricyclic 1,5-naphthyridinone oxabicyclooctane-linked novel bacterial topoisomerase inhibitors as broad-spectrum antibacterial agents-SAR of left-hand-side moiety (Part-2).
Bioorg.Med.Chem.Lett. 25 pp.1831 - 1835 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.17R free:0.212

NDB ID:

4WQ1

PDB ID:

4WQ1 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.188R free:0.234

NDB ID:

4WQR

PDB ID:

4WQR 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.15Å R work:0.189R free:0.231

NDB ID:

4WR6

PDB ID:

4WR6 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.204R free:0.249

NDB ID:

4WRA

PDB ID:

4WRA 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.194R free:0.248

NDB ID:

4WRO

PDB ID:

4WRO 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.193R free:0.23

NDB ID:

4WSD

PDB ID:

4WSD 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.193R free:0.234

NDB ID:

4WSM

PDB ID:

4WSM 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.185

NDB ID:

4WT1

PDB ID:

4WT1 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.05Å R work:0.199

NDB ID:

4WU1

PDB ID:

4WU1 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Classification:

ribosome

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.187R free:0.238

NDB ID:

4WZD

PDB ID:

4WZD 

Release:

2015-06-10

Title:

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Classification:

ribosome

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.226R free:0.193

NDB ID:

4WZO

PDB ID:

4WZO 

Release:

2015-06-10

Title:

Complex of 70S ribosome with tRNA-fMet and mRNA

Classification:

RIBOSOME

Authors:

Rozov, A., Demeshkina, N., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

Structural insights into the translational infidelity mechanism.
Nat Commun 6 pp.7251 - 7251 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.3Å R work:0.19R free:0.257

NDB ID:

4XCO

PDB ID:

4XCO 

Release:

2015-06-10

Title:

Signal-sequence induced conformational changes in the signal recognition particle

Classification:

RNA BINDING PROTEIN

Authors:

Hainzl, T., Sauer-Eriksson, A.E.

Citation:

Signal-sequence induced conformational changes in the signal recognition particle.
Nat Commun 6 pp.7163 - 7163 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.208R free:0.257

NDB ID:

4YOE

PDB ID:

4YOE 

Release:

2015-06-10

Title:

Structure of UP1 bound to RNA 5'-AGU-3'

Classification:

RNA Binding Protein/RNA

Authors:

Morgan, C.E., Meagher, J.L., Levengood, J.D., Delproposto, J., Rollins, C., Stuckey, J.A., Tolbert, B.S.

Citation:

The First Crystal Structure of the UP1 Domain of hnRNP A1 bound to RNA Reveals a New Look for an Old RNA Binding Protein.
J.Mol.Biol. pp. - 2015

Experiment:

X-RAY DIFFRACTION Resolution:1.92Å R work:0.185R free:0.237

NDB ID:

4Z3Q

PDB ID:

4Z3Q 

Release:

2015-06-03

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Classification:

Ribosome/Antibiotic

Authors:

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K.A., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

Citation:

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Mol.Cell 58 pp.832 - 844 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.232R free:0.282

NDB ID:

4Z3R

PDB ID:

4Z3R 

Release:

2015-06-03

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Classification:

Ribosome/Antibiotic

Authors:

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K.A., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

Citation:

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Mol.Cell 58 pp.832 - 844 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.231R free:0.283

NDB ID:

4Z3S

PDB ID:

4Z3S 

Release:

2015-06-03

Title:

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Classification:

Ribosome/Antibiotic

Authors:

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K.A., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

Citation:

Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Mol.Cell 58 pp.832 - 844 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.225R free:0.27

NDB ID:

4Z8C

PDB ID:

4Z8C 

Release:

2015-05-20

Title:

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Classification:

ribosome/antibiotic

Authors:

Roy, R.N., Lomakin, I.B., Gagnon, M.G., Steitz, T.A.

Citation:

The mechanism of inhibition of protein synthesis by the proline-rich peptide oncocin.
Nat.Struct.Mol.Biol. 22 pp.466 - 469 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.202R free:0.247

NDB ID:

4ZER

PDB ID:

4ZER 

Release:

2015-05-20

Title:

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Classification:

Ribosome

Authors:

Seefeldt, A.C., Nguyen, F., Antunes, S., Perebaskine, N., Graf, M., Arenz, S., Inampudi, K.K., Douat, C., Guichard, G., Wilson, D.N., Innis, C.A.

Citation:

The proline-rich antimicrobial peptide Onc112 inhibits translation by blocking and destabilizing the initiation complex.
Nat.Struct.Mol.Biol. 22 pp.470 - 475 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.23R free:0.271

NDB ID:

4TUA

PDB ID:

4TUA 

Release:

2015-05-13

Title:

Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome

Classification:

ribosome

Authors:

Fagan, C.E., Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna 20 pp.1944 - 1954 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.207R free:0.251

NDB ID:

4TUB

PDB ID:

4TUB 

Release:

2015-05-13

Title:

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Classification:

RIBOSOME

Authors:

Fagan, C.E., Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna 20 pp.1944 - 1954 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.216R free:0.258

NDB ID:

4TUC

PDB ID:

4TUC 

Release:

2015-05-13

Title:

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Classification:

RIBOSOME

Authors:

Fagan, C.E., Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna 20 pp.1944 - 1954 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.214R free:0.252

NDB ID:

4TUD

PDB ID:

4TUD 

Release:

2015-05-13

Title:

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Classification:

RIBOSOME

Authors:

Fagan, C.E., Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna 20 pp.1944 - 1954 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.204R free:0.244

NDB ID:

4TUE

PDB ID:

4TUE 

Release:

2015-05-13

Title:

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Classification:

RIBOSOME

Authors:

Fagan, C.E., Maehigashi, T., Dunkle, J.A., Miles, S.J., Dunham, C.M.

Citation:

Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna 20 pp.1944 - 1954 2014

Experiment:

X-RAY DIFFRACTION Resolution:3.5Å R work:0.214R free:0.249

NDB ID:

4PGY

PDB ID:

4PGY 

Release:

2015-05-06

Title:

Structure of human DNA polymerase beta complexed with a nicked DNA containing a GT at N-1 position and GC at N position

Classification:

Transferase,Lyase/DNA

Authors:

Koag, M.C., Lee, S.

Citation:

The spontaneous base substitution mechanisms of human DNA polymerase beta
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.26Å R work:0.209R free:0.264

NDB ID:

4WB3

PDB ID:

4WB3 

Release:

2015-05-06

Title:

Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a-desArg complement anaphylatoxin

Classification:

DNA-RNA HYBRID

Authors:

Yatime, L., Maasch, C., Hoehlig, K., Klussmann, S., Andersen, G.R., Vater, A.

Citation:

Structural basis for the targeting of complement anaphylatoxin C5a using a mixed L-RNA/L-DNA aptamer.
Nat Commun 6 pp.6481 - 6481 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.162R free:0.199

NDB ID:

4WZM

PDB ID:

4WZM 

Release:

2015-05-06

Title:

Mutant K18E of RNA dependent RNA polymerase from Foot-and-Mouth Disease Virus complexed with RNA

Classification:

TRANSFERASE

Authors:

Ferrer-Orta, C., de la Higuera, I., Caridi, F., Sanchez-Aparicio, M.T., Moreno, E., Perales, C., Singh, K., Sarafianos, S.G., Sobrino, F., Domingo, E., Verdaguer, N.

Citation:

Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol. 89 pp.6848 - 6859 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.52Å R work:0.224R free:0.261

NDB ID:

4WZQ

PDB ID:

4WZQ 

Release:

2015-05-06

Title:

Mutant K20E of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with RNA

Classification:

TRANSFERASE

Authors:

Ferrer-Orta, C., de la Higuera, I., Caridi, F., Sanchez-Aparicio, M.T., Moreno, E., Perales, C., Singh, K., Sarafianos, S.G., Sobrino, F., Domingo, E., Verdaguer, N.

Citation:

Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol. 89 pp.6848 - 6859 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.249R free:0.27

NDB ID:

4X2B

PDB ID:

4X2B 

Release:

2015-05-06

Title:

K20A RNA dependent RNA polymerase mutant from Foot-and-Mouth disease Virus complexed with an RNA

Classification:

TRANSFERASE

Authors:

Ferrer-Orta, C., de la Higuera, I., Caridi, F., Sanchez-Aparicio, M.T., Moreno, E., Perales, C., Singh, K., Sarafianos, S.G., Sobrino, F., Domingo, E., Verdaguer, N.

Citation:

Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol. 89 pp.6848 - 6859 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.94Å R work:0.215R free:0.258

NDB ID:

4XNR

PDB ID:

4XNR 

Release:

2015-05-06

Title:

Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine

Classification:

RNA

Authors:

Liu, Y., Holmstrom, E., Zhang, J., Yu, P., Wang, J., Dyba, M.A., Chen, D., Ying, J., Lockett, S., Nesbitt, D.J., Ferre-D'Amare, A.R., Sousa, R., Stagno, J.R., Wang, Y.X.

Citation:

Synthesis and applications of RNAs with position-selective labelling and mosaic composition.
Nature 522 pp.368 - 372 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.21Å R work:0.2R free:0.219

NDB ID:

4YCO

PDB ID:

4YCO 

Release:

2015-04-22

Title:

E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe

Classification:

OXIDOREDUCTASE

Authors:

Byrne, R.T., Jenkins, H.T., Peters, D.T., Whelan, F., Stowell, J., Aziz, N., Kasatsky, P., Rodnina, M.V., Koonin, E.V., Konevega, A.L., Antson, A.A.

Citation:

Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA 112 pp.6033 - 6037 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.1Å R work:0.192R free:0.223

NDB ID:

4YCP

PDB ID:

4YCP 

Release:

2015-04-22

Title:

E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp

Classification:

Oxidoreductase/RNA

Authors:

Byrne, R.T., Jenkins, H.T., Peters, D.T., Whelan, F., Stowell, J., Aziz, N., Kasatsky, P., Rodnina, M.V., Koonin, E.V., Konevega, A.L., Antson, A.A.

Citation:

Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA 112 pp.6033 - 6037 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.55Å R work:0.208R free:0.234

NDB ID:

4YLN

PDB ID:

4YLN 

Release:

2015-04-22

Title:

E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Zuo, Y., Steitz, T.A.

Citation:

Crystal Structures of the E. coli Transcription Initiation Complexes with a Complete Bubble.
Mol.Cell 58 pp.534 - 540 2015

Experiment:

X-RAY DIFFRACTION Resolution:5.5Å R work:0.244R free:0.328

NDB ID:

4YLO

PDB ID:

4YLO 

Release:

2015-04-22

Title:

E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Zuo, Y., Steitz, T.A.

Citation:

Crystal Structures of the E. coli Transcription Initiation Complexes with a Complete Bubble.
Mol.Cell 58 pp.534 - 540 2015

Experiment:

X-RAY DIFFRACTION Resolution:6.0Å R work:0.226R free:0.314

NDB ID:

4YLP

PDB ID:

4YLP 

Release:

2015-04-22

Title:

E. coli Transcription Initiation Complex - 16-bp spacer and 5-nt RNA

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Zuo, Y., Steitz, T.A.

Citation:

Crystal Structures of the E. coli Transcription Initiation Complexes with a Complete Bubble.
Mol.Cell 58 pp.534 - 540 2015

Experiment:

X-RAY DIFFRACTION Resolution:5.5Å R work:0.23R free:0.313

NDB ID:

4YN6

PDB ID:

4YN6 

Release:

2015-04-22

Title:

Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs)

Classification:

RNA

Authors:

Kumar, A.

Citation:

Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.301Å R work:0.216R free:0.26

NDB ID:

2MN0

PDB ID:

2MN0 

Release:

2015-04-15

Title:

D loop of tRNA(Met)

Classification:

RNA

Authors:

Dyubankova, N., Sochacka, E., Kraszewska, K., Nawrot, B., Herdewijn, P., Lescrinier, E.

Citation:

Contribution of dihydrouridine in folding of the D-arm in tRNA.
Org.Biomol.Chem. 13 pp.4960 - 4966 2015

Experiment:

SOLUTION NMR

NDB ID:

4WC2

PDB ID:

4WC2 

Release:

2015-04-15

Title:

Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.215R free:0.267

NDB ID:

4WC3

PDB ID:

4WC3 

Release:

2015-04-15

Title:

Structure of tRNA-processing enzyme complex 1

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.24R free:0.288

NDB ID:

4WC4

PDB ID:

4WC4 

Release:

2015-04-15

Title:

tRNA-processing enzyme complex 2

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.501Å R work:0.276R free:0.301

NDB ID:

4WC5

PDB ID:

4WC5 

Release:

2015-04-15

Title:

Structure of tRNA-processing enzyme complex 3

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.41Å R work:0.266R free:0.308

NDB ID:

4WC6

PDB ID:

4WC6 

Release:

2015-04-15

Title:

Structure of tRNA-processing enzyme complex 4

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.41Å R work:0.266R free:0.327

NDB ID:

4WC7

PDB ID:

4WC7 

Release:

2015-04-15

Title:

Structure of tRNA-processing enzyme complex 5

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.102Å R work:0.277R free:0.321

NDB ID:

4X0A

PDB ID:

4X0A 

Release:

2015-04-15

Title:

Structure of tRNA-processing enzyme complex 6

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.505Å R work:0.258R free:0.312

NDB ID:

4X0B

PDB ID:

4X0B 

Release:

2015-04-15

Title:

Structure of tRNA-processing enzyme complex 7

Classification:

TRANSFERASE/RNA

Authors:

Yamashita, S., Martinez, A., Tomita, K.

Citation:

Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure 23 pp.830 - 842 2015

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.267R free:0.303

NDB ID:

4YAZ

PDB ID:

4YAZ 

Release:

2015-04-15

Title:

3',3'-cGAMP riboswitch bound with 3',3'-cGAMP

Classification:

RNA

Authors:

Ren, A., Wang, X.C., Kellenberger, C.A., Rajashankar, K.R., Jones, R.A., Hammond, M.C., Patel, D.J.

Citation:

Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep 11 pp.1 - 12 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.212R free:0.249

NDB ID:

4YB0

PDB ID:

4YB0 

Release:

2015-04-15

Title:

3',3'-cGAMP riboswitch bound with c-di-GMP

Classification:

RNA

Authors:

Ren, A., Wang, X.C., Kellenberger, C.A., Rajashankar, K.R., Jones, R.A., Hammond, M.C., Patel, D.J.

Citation:

Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep 11 pp.1 - 12 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.121Å R work:0.228R free:0.261

NDB ID:

4YB1

PDB ID:

4YB1 

Release:

2015-04-15

Title:

20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP

Classification:

RNA/RNA BINDING PROTEIN

Authors:

Ren, A., Wang, X.C., Kellenberger, C.A., Rajashankar, K.R., Jones, R.A., Hammond, M.C., Patel, D.J.

Citation:

Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep 11 pp.1 - 12 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.081Å R work:0.218R free:0.298

NDB ID:

2MZ1

PDB ID:

2MZ1 

Release:

2015-04-08

Title:

Solution structure of hnRNP C RRM in complex with 5'-UUUUC-3' RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Cienikova, Z., Damberger, F.F., Hall, J., Allain, F.H., Maris, C.

Citation:

Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif.
J.Am.Chem.Soc. 136 pp.14536 - 14544 2014

Experiment:

SOLUTION NMR

NDB ID:

4Y1I

PDB ID:

4Y1I 

Release:

2015-04-08

Title:

Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+

Classification:

RNA

Authors:

Price, I.R., Gaballa, A., Ding, F., Helmann, J.D., Ke, A.

Citation:

Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches.
Mol.Cell 57 pp.1110 - 1123 2015

Experiment:

X-RAY DIFFRACTION Resolution:2.85Å R work:0.192R free:0.223