A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Jul-2018 number of released structures: 9584
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4591  Download results as an excel file       Gallery view

NDB ID:

5ZW4

PDB ID:

5ZW4 

Release:

2018-07-11

Title:

Crystal structure of tRNA bound TrmR

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Ryu, H., Grove, T.L., Almo, S.C., Kim, J.

Citation:

Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.7Å R work:0.192R free:0.222

NDB ID:

6DT8

PDB ID:

6DT8 

Release:

2018-07-11

Title:

Bacteriophage N4 RNA polymerase II elongation complex 1

Classification:

transcription/dna/rna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

Bacteriophage N4 RNA polymerase II elongation complex 1
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.2Å R work:0.189R free:0.242

NDB ID:

6DTA

PDB ID:

6DTA 

Release:

2018-07-11

Title:

Bacteriophage N4 RNA polymerase II elongation complex 2

Classification:

transcription/dna/rna

Authors:

Molodtsov, V., Murakami, K.S.

Citation:

Bacteriophage N4 RNA polymerase II elongation complex 2
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.694Å R work:0.19R free:0.222

NDB ID:

6BJX

PDB ID:

6BJX 

Release:

2018-07-04

Title:

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Classification:

RNA

Authors:

Shoffner, G.M., Wang, R., Podell, E., Cech, T.R., Guo, F.

Citation:

In Crystallo Selection to Establish New RNA Crystal Contacts.
Structure pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.14Å R work:0.211R free:0.229

NDB ID:

6CVP

PDB ID:

6CVP 

Release:

2018-07-04

Title:

Human Aprataxin (Aptx) R199H bound to RNA-DNA, AMP and Zn product complex

Classification:

HYDROLASE/DNA/RNA

Authors:

Tumbale, P., Schellenberg, M.J., Mueller, G.A., Fairweather, E., Watson, M., Little, J.N., Krahn, J., Waddell, I., London, R.E., Williams, R.S.

Citation:

Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease.
EMBO J. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.999Å R work:0.164R free:0.213

NDB ID:

6CVQ

PDB ID:

6CVQ 

Release:

2018-07-04

Title:

Human Aprataxin (Aptx) H201Q bound to RNA-DNA, AMP and Zn product complex

Classification:

HYDROLASE/DNA/RNA

Authors:

Tumbale, P., Schellenberg, M.J., Mueller, G.A., Fairweather, E., Watson, M., Little, J.N., Krahn, J., Waddell, I., London, R.E., Williams, R.S.

Citation:

Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease.
EMBO J. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.65Å R work:0.117R free:0.167

NDB ID:

6CVR

PDB ID:

6CVR 

Release:

2018-07-04

Title:

Human Aprataxin (Aptx) S242N bound to RNA-DNA, AMP and Zn product complex

Classification:

HYDROLASE/DNA/RNA

Authors:

Tumbale, P., Schellenberg, M.J., Mueller, G.A., Fairweather, E., Watson, M., Little, J.N., Krahn, J., Waddell, I., London, R.E., Williams, R.S.

Citation:

Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease.
EMBO J. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.88Å R work:0.166R free:0.189

NDB ID:

6CVT

PDB ID:

6CVT 

Release:

2018-07-04

Title:

Human Aprataxin (Aptx) V263G bound to RNA-DNA, AMP and Zn product complex

Classification:

HYDROLASE/DNA/RNA

Authors:

Tumbale, P., Schellenberg, M.J., Mueller, G.A., Fairweather, E., Watson, M., Little, J.N., Krahn, J., Waddell, I., London, R.E., Williams, R.S.

Citation:

Mechanism of APTX nicked DNA sensing and pleiotropic inactivation in neurodegenerative disease.
EMBO J. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.941Å R work:0.246R free:0.289

NDB ID:

6D8M

PDB ID:

6D8M 

Release:

2018-07-04

Title:

Group I self-splicing intron P4-P6 domain mutant A125U/G126U

Classification:

RNA

Authors:

Shoffner, G.M., Wang, R., Podell, E., Cech, T.R., Guo, F.

Citation:

In Crystallo Selection to Establish New RNA Crystal Contacts.
Structure pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.7Å R work:0.199R free:0.229

NDB ID:

6D8O

PDB ID:

6D8O 

Release:

2018-07-04

Title:

Group I self-splicing intron P4-P6 domain mutant A230U

Classification:

RNA

Authors:

Shoffner, G.M., Wang, R., Podell, E., Cech, T.R., Guo, F.

Citation:

In Crystallo Selection to Establish New RNA Crystal Contacts.
Structure pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.80112Å R work:0.21R free:0.226

NDB ID:

6FZ0

PDB ID:

6FZ0 

Release:

2018-07-04

Title:

Crystal structure of the metY SAM V riboswitch

Classification:

RNA

Authors:

Huang, L., Lilley, D.M.

Citation:

Structure and ligand binding of the SAM-V riboswitch.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.499Å R work:0.231R free:0.269

NDB ID:

6GSJ

PDB ID:

6GSJ 

Release:

2018-07-04

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Wolff, P., Grosjean, H., Yusupov, M., Yusupova, G., Westhof, E.

Citation:

Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.96Å R work:0.195R free:0.251

NDB ID:

6GSK

PDB ID:

6GSK 

Release:

2018-07-04

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Wolff, P., Grosjean, H., Yusupov, M., Yusupova, G., Westhof, E.

Citation:

Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.36Å R work:0.2R free:0.264

NDB ID:

6GSL

PDB ID:

6GSL 

Release:

2018-07-04

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Wolff, P., Grosjean, H., Yusupov, M., Yusupova, G., Westhof, E.

Citation:

Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.16Å

NDB ID:

5Z9X

PDB ID:

5Z9X 

Release:

2018-06-27

Title:

Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate

Classification:

PLANT PROTEIN/RNA

Authors:

Chen, J., Liu, L., You, C., Gu, J., Ruan, W., Zhang, L., Cao, C., Gan, J., Huang, Y., Chen, X., Ma, J.

Citation:

Structure of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with a single-stranded RNA substrate
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.251R free:0.261

NDB ID:

6D12

PDB ID:

6D12 

Release:

2018-06-27

Title:

Crystal structure of C-terminal xRRM domain of human Larp7 bound to 7SK stem-loop 4 RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Eichhorn, C.D., Yang, Y., Repeta, L., Feigon, J.

Citation:

Structural basis for recognition of human 7SK long noncoding RNA by the La-related protein Larp7.
Proc. Natl. Acad. Sci. U.S.A. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.205Å R work:0.227R free:0.267

NDB ID:

6DCL

PDB ID:

6DCL 

Release:

2018-06-27

Title:

Crystal structure of UP1 bound to pri-miRNA-18a terminal loop

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Kooshapur, H., Choudhury, N.R., Simon, B., Muhlbauer, M., Jussupow, A., Fernandez, N., Jones, A.N., Dallmann, A., Gabel, F., Camilloni, C., Michlewski, G., Caceres, J.F., Sattler, M.

Citation:

Structural basis for terminal loop recognition and stimulation of pri-miRNA-18a processing by hnRNP A1.
Nat Commun 9 pp.2479 - 2479 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.497Å R work:0.201R free:0.228

NDB ID:

5VOE

PDB ID:

5VOE 

Release:

2018-06-20

Title:

DesGla-XaS195A Bound to Aptamer 11F7t

Classification:

HYDROLASE/RNA

Authors:

Gunaratne, R., Kumar, S., Frederiksen, J.W., Stayrook, S., Lohrmann, J.L., Perry, K., Bompiani, K.M., Chabata, C.V., Thalji, N.K., Ho, M.D., Arepally, G., Camire, R.M., Krishnaswamy, S., Sullenger, B.A.

Citation:

Combination of aptamer and drug for reversible anticoagulation in cardiopulmonary bypass.
Nat. Biotechnol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.212R free:0.248

NDB ID:

5W4U

PDB ID:

5W4U 

Release:

2018-06-20

Title:

Pol II elongation complex with an N6-methyladenine-containing template

Classification:

DNA BINDING PROTEIN/RNA/DNA

Authors:

Wang, W., Wang, D.

Citation:

Pol II elongation complex with an N6-methyladenine-containing template
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.6Å R work:0.226R free:0.259

NDB ID:

5W51

PDB ID:

5W51 

Release:

2018-06-20

Title:

Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP

Classification:

DNA BINDING PROTEIN/RNA/DNA

Authors:

Wang, W., Wang, D.

Citation:

Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.404Å R work:0.226R free:0.253

NDB ID:

6CK4

PDB ID:

6CK4 

Release:

2018-06-20

Title:

G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp

Classification:

RNA

Authors:

Knappenberger, A.J., Reiss, C.W., Strobel, S.A.

Citation:

Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA.
Elife 7 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.097Å R work:0.248R free:0.304

NDB ID:

6CK5

PDB ID:

6CK5 

Release:

2018-06-20

Title:

PRPP riboswitch from T. mathranii bound to PRPP

Classification:

RNA

Authors:

Knappenberger, A.J., Reiss, C.W., Strobel, S.A.

Citation:

Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA.
Elife 7 pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.49Å R work:0.214R free:0.252

NDB ID:

6D3P

PDB ID:

6D3P 

Release:

2018-06-20

Title:

Crystal structure of an exoribonuclease-resistant RNA from Sweet clover necrotic mosaic virus (SCNMV)

Classification:

RNA

Authors:

Steckelberg, A.L., Akiyama, B.M., Costantino, D.A., Sit, T.L., Nix, J.C., Kieft, J.S.

Citation:

A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure.
Proc. Natl. Acad. Sci. U.S.A. 115 pp.6404 - 6409 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.9Å R work:0.241R free:0.258

NDB ID:

6F4G

PDB ID:

6F4G 

Release:

2018-06-20

Title:

'Crystal structure of the Drosophila melanogaster SNF/U2A'/U2-SL4 complex

Classification:

SPLICING

Authors:

Weber, G., DeKoster, G.T., Holton, N., Hall, K.B., Wahl, M.C.

Citation:

Molecular principles underlying dual RNA specificity in the Drosophila SNF protein.
Nat Commun 9 pp.2220 - 2220 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.166R free:0.217

NDB ID:

6F4H

PDB ID:

6F4H 

Release:

2018-06-20

Title:

Crystal structure of the Drosophila melanogaster SNF/U1-SL2 complex

Classification:

SPLICING

Authors:

Weber, G., DeKoster, G.T., Holton, N., Hall, K.B., Wahl, M.C.

Citation:

Molecular principles underlying dual RNA specificity in the Drosophila SNF protein.
Nat Commun 9 pp.2220 - 2220 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.169R free:0.211

NDB ID:

5VOF

PDB ID:

5VOF 

Release:

2018-06-13

Title:

DesGla-XaS195A Bound to Aptamer 11F7t and Rivaroxaban

Classification:

HYDROLASE/HYDROLASE INHIBITOR/RNA

Authors:

Gunaratne, R., Kumar, S., Frederiksen, J.W.,, Stayrook, S., Lohrmann, J.L., Perry, K., Chabata, C.V., Thalji, N.K., Ho, M.D., Arepally, G., Camire, R.M., Krishnaswamy, S.K., Sullenger, B.A.

Citation:

DesGla-XaS195A Bound to Aptamer 11F7t and Rivaroxaban
Nat.Biotechnol. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.22R free:0.253

NDB ID:

6BY4

PDB ID:

6BY4 

Release:

2018-06-13

Title:

Single-State 14-mer UUCG Tetraloop calculated from Exact NOEs

Classification:

RNA

Authors:

Nichols, P.J., Henen, M.A., Born, A., Strotz, D., Guntert, P., Vogeli, B.

Citation:

High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints
Commun Biol pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6BY5

PDB ID:

6BY5 

Release:

2018-06-13

Title:

Two-State 14-mer UUCG Tetraloop calculated from Exact NOEs (State one: Conformers 1-5, State Two: Conformers 6-10)

Classification:

RNA

Authors:

Nichols, P.J., Henen, M.A., Born, A., Strotz, D., Guntert, P., Vogeli, B.

Citation:

High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints
Commun Biol pp. - 2018

Experiment:

SOLUTION NMR

NDB ID:

6CB3

PDB ID:

6CB3 

Release:

2018-06-13

Title:

Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium

Classification:

RNA

Authors:

Bachas, S.T., Ferre-D'Amare, A.R.

Citation:

Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators.
Cell Chem Biol pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.891Å R work:0.14R free:0.173

NDB ID:

6CC1

PDB ID:

6CC1 

Release:

2018-06-13

Title:

Crystal structure of ykoY-alx riboswitch chimera bound to cadmium

Classification:

RNA

Authors:

Bachas, S.T., Ferre-D'Amare, A.R.

Citation:

Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators.
Cell Chem Biol pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.54Å R work:0.221R free:0.28

NDB ID:

6CC3

PDB ID:

6CC3 

Release:

2018-06-13

Title:

Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium

Classification:

RNA

Authors:

Bachas, S.T., Ferre-D'Amare, A.R.

Citation:

Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators.
Cell Chem Biol pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.698Å R work:0.195R free:0.248

NDB ID:

6GMY

PDB ID:

6GMY 

Release:

2018-06-13

Title:

Tc-DNA/RNA duplex

Classification:

DNA-RNA HYBRID

Authors:

Istrate, A., Johannsen, S., Istrate, A., Sigel, R.K.O., Leumann, C.

Citation:

NMR solution structure of fully modified tc-DNA/RNA, tc-DNA/DNA and tc-DNA/tc-DNA duplexes
To Be Published pp. - 0

Experiment:

SOLUTION NMR

NDB ID:

6CMN

PDB ID:

6CMN 

Release:

2018-06-06

Title:

Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Belashov, I.A., Crawford, D.W., Cavender, C.E., Dai, P., Beardslee, P.C., Mathews, D.H., Pentelute, B.L., McNaughton, B.R., Wedekind, J.E.

Citation:

Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.796Å R work:0.189R free:0.221

NDB ID:

5Z1H

PDB ID:

5Z1H 

Release:

2018-05-30

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicin

Classification:

RNA

Authors:

Kanazawa, H., Saavedra, O.M., Maianti, J.P., Young, S.A., Izquierdo, L., Smith, T.K., Hanessian, S., Kondo, J.

Citation:

Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside.
ChemMedChem pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.212R free:0.263

NDB ID:

5Z1I

PDB ID:

5Z1I 

Release:

2018-05-30

Title:

Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin

Classification:

RNA

Authors:

Kanazawa, H., Saavedra, O.M., Maianti, J.P., Young, S.A., Izquierdo, L., Smith, T.K., Hanessian, S., Kondo, J.

Citation:

Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside.
ChemMedChem pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.903Å R work:0.195R free:0.224

NDB ID:

6C8D

PDB ID:

6C8D 

Release:

2018-05-30

Title:

RNA-dGMP complex with Mg ion

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.92Å R work:0.219R free:0.281

NDB ID:

6C8E

PDB ID:

6C8E 

Release:

2018-05-30

Title:

RNA-imidazolium-bridged intermediate complex, 4h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.8Å R work:0.267R free:0.289

NDB ID:

6C8I

PDB ID:

6C8I 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 5 min soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.77Å R work:0.23R free:0.282

NDB ID:

6C8J

PDB ID:

6C8J 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 15 min soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.21R free:0.244

NDB ID:

6C8K

PDB ID:

6C8K 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 30 min soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.259Å R work:0.223R free:0.302

NDB ID:

6C8L

PDB ID:

6C8L 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 1h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.25Å R work:0.169R free:0.252

NDB ID:

6C8M

PDB ID:

6C8M 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer, 1.5h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.4Å R work:0.239R free:0.271

NDB ID:

6C8N

PDB ID:

6C8N 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer complex, 2h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.9Å R work:0.245R free:0.306

NDB ID:

6C8O

PDB ID:

6C8O 

Release:

2018-05-30

Title:

RNA-activated 2-AIpG monomer, 3h soaking

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.85Å R work:0.231R free:0.281

NDB ID:

6CAB

PDB ID:

6CAB 

Release:

2018-05-30

Title:

RNA-dGMP complex with Sr ion

Classification:

RNA

Authors:

Zhang, W., Walton, T., Li, L., Szostak, J.W.

Citation:

Crystallographic observation of nonenzymatic RNA primer extension
Elife 7 pp.e36422 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.215R free:0.28

NDB ID:

6BOH

PDB ID:

6BOH 

Release:

2018-05-23

Title:

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Classification:

RIBOSOME/ANTIBIOTIC

Authors:

Svidritskiy, E., Korostelev, A.A.

Citation:

Conformational Control of Translation Termination on the 70S Ribosome.
Structure 26 pp.821 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å

NDB ID:

6BOK

PDB ID:

6BOK 

Release:

2018-05-23

Title:

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Classification:

RIBOSOME

Authors:

Svidritskiy, E., Korostelev, A.A.

Citation:

Conformational Control of Translation Termination on the 70S Ribosome.
Structure 26 pp.821 - 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.55Å

NDB ID:

6D1V

PDB ID:

6D1V 

Release:

2018-05-23

Title:

Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA

Classification:

isomerase/hydrolase/rna

Authors:

Gao, A., Vasilyev, N., Luciano, D.J., Levenson-Palmer, R., Richards, J., Marsiglia, W.M., Traaseth, N.J., Belasco, J.G., Serganov, A.

Citation:

Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res. pp. - 2018

Experiment:

X-RAY DIFFRACTION Resolution:1.81Å R work:0.198R free:0.219

NDB ID:

5NPM

PDB ID:

5NPM 

Release:

2018-05-16

Title:

CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN TTHL1 LACKING 8 N-TERMINAL RESIDUES IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS

Classification:

RNA

Authors:

Gabdulkhakov, A.G., Tishchenko, T.V., Nevskaya, N.A., Nikonov, S.V., Garber, M.B.

Citation:

CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN TTHL1 LACKING 8 N-TERMINAL RESIDUES IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.201R free:0.248

NDB ID:

5VSU

PDB ID:

5VSU 

Release:

2018-05-09

Title:

Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA

Classification:

SPLICING

Authors:

Montemayor, E.J., Didychuk, A.L., Yake, A.D., Sidhu, G.K., Brow, D.A., Butcher, S.E.

Citation:

Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun 9 pp.1749 - 1749 2018

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.233R free:0.298