A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Jul-2019 number of released structures: 10288
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 5050  Download results as an excel file       Gallery view

NDB ID:

 6GZK

PDB ID:

6GZK 

Release:

2019-07-17

Title:

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Classification:

RNA

Authors:

Duchardt-Ferner, E., Kreutz, C.R., Ohlenschlager, O., Wohnert, J.

Citation:

Structure of an RNA aptamer binding to the fluorophore tetramethylrhodamine
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 6GZR

PDB ID:

6GZR 

Release:

2019-07-17

Title:

Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Classification:

RNA

Authors:

Duchardt-Ferner, E., Kreutz, C.R., Ohlenschlager, O., Wohnert, J.

Citation:

Structure of an RNA aptamer binding to the fluorophore tetramethylrhodamine
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

NDB ID:

 6OD9

PDB ID:

6OD9 

Release:

2019-07-17

Title:

Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser

Classification:

RNA

Authors:

Jones, C.P., Tran, B., Conrad, C., Stango, J., Trachman, R.J., Fischer, P., Meents, A., Ferre-D'Amare, A.R.

Citation:

Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
Acta Crystallogr.,Sect.F pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:4.102Å R work:0.258R free:0.307

NDB ID:

 6NY5

PDB ID:

6NY5 

Release:

2019-07-03

Title:

Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Qiu, C., Dutcher, R.C., Porter, D.F., Arava, Y., Wickens, M., Hall, T.M.T.

Citation:

Cooperative activity of distinct RNA-binding modules define recognition specificity of a fungal Puf1 protein
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.002Å R work:0.21R free:0.263

Equivalence Class: 

NR_all_12115.1 

Eq. Class Rep:

6NY5

NDB ID:

 6OL3

PDB ID:

6OL3 

Release:

2019-07-03

Title:

Crystal structure of an adenovirus virus-associated RNA

Classification:

RNA

Authors:

Hood, I.V., Gordon, J.M., Bou-Nader, C., Henderson, F.E., Bahmanjah, S., Zhang, J.

Citation:

Crystal structure of an adenovirus virus-associated RNA.
Nat Commun 10 pp.2871 - 2871 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.74Å R work:0.217R free:0.235

Equivalence Class: 

NR_all_80225.1 

Eq. Class Rep:

6OL3

NDB ID:

 6Q8U

PDB ID:

6Q8U 

Release:

2019-07-03

Title:

Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein

Classification:

RNA

Authors:

Ashraf, S., Huang, L., Lilley, D.M.J.

Citation:

Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol. pp.1 - 9 2019

Experiment:

 X-RAY DIFFRACTION Resolution:1.99Å R work:0.188R free:0.227

Equivalence Class: 

NR_all_67355.2 

Eq. Class Rep:

4CS1

NDB ID:

 6Q8V

PDB ID:

6Q8V 

Release:

2019-07-03

Title:

Structure of the standard kink turn HmKt-7 variant A2bm6A.

Classification:

RNA

Authors:

Ashraf, S., Huang, L., Lilley, D.M.J.

Citation:

Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol. pp.1 - 9 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.09Å R work:0.205R free:0.21

Equivalence Class: 

NR_all_63269.1 

Eq. Class Rep:

6Q8V

NDB ID:

 6R47

PDB ID:

6R47 

Release:

2019-07-03

Title:

The structure of pistol ribozyme bound to magnesium

Classification:

RNA

Authors:

Wilson, T.J., Liu, Y., Li, N.S., Dai, Q., Piccirilli, J.A., Lilley, D.M.J.

Citation:

Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
J.Am.Chem.Soc. 141 pp.7865 - 7875 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.175R free:0.18

Equivalence Class: 

NR_all_80776.1 

Eq. Class Rep:

6R47

NDB ID:

 6DVK

PDB ID:

6DVK 

Release:

2019-06-26

Title:

Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program - construct 6 (miniTTR 6)

Classification:

RNA

Authors:

Yesselman, J.D., Eiler, D.R., Carlson, E.D., Ooms, A.N., Kladwang, W., Shi, X., Costantino, D.A., Herschlag, D., Jewett, M.C., Kieft, J.S., Das, R.

Citation:

Computational design of asymmetric three-dimensional RNA structures and machines
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.55Å R work:0.231R free:0.268

Equivalence Class: 

NR_all_89968.1 

Eq. Class Rep:

6DVK

NDB ID:

 6A6J

PDB ID:

6A6J 

Release:

2019-06-19

Title:

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhang, M., Wu, B., Ma, J., Huang, Y.

Citation:

Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA
To be published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.255Å R work:0.224R free:0.272

Equivalence Class: 

NR_all_65220.1 

Eq. Class Rep:

6A6J

NDB ID:

 6A6L

PDB ID:

6A6L 

Release:

2019-06-19

Title:

Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Huang, Y.

Citation:

Crystal structure of the cold shock domain of YB-1 in complex with m5C RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.78Å R work:0.179R free:0.206

Equivalence Class: 

NR_all_65220.1 

Eq. Class Rep:

6A6J

NDB ID:

 6IV8

PDB ID:

6IV8 

Release:

2019-06-19

Title:

the selenomethionine(SeMet)-derived Cas13d binary complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhang, B., Ye, Y., Ye, W., Perculija, V., Jiang, H., Chen, Y., Li, Y., Chen, J., Lin, J., Wang, S., Chen, Q., Han, Y.S., Ouyang, S.

Citation:

Two HEPN domains dictate CRISPR RNA maturation and target cleavage in Cas13d.
Nat Commun 10 pp.2544 - 2544 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.188R free:0.21

Equivalence Class: 

NR_all_65403.1 

Eq. Class Rep:

6IV9

NDB ID:

 6IV9

PDB ID:

6IV9 

Release:

2019-06-19

Title:

the Cas13d binary complex

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Zhang, B., Ye, Y., Ye, W., Perculija, V., Jiang, H., Chen, Y., Li, Y., Chen, J., Lin, J., Wang, S., Chen, Q., Han, Y.S., Ouyang, S.

Citation:

Two HEPN domains dictate CRISPR RNA maturation and target cleavage in Cas13d.
Nat Commun 10 pp.2544 - 2544 2019

Experiment:

 X-RAY DIFFRACTION Resolution:1.86Å R work:0.169R free:0.195

Equivalence Class: 

NR_all_65403.1 

Eq. Class Rep:

6IV9

NDB ID:

 6OY6

PDB ID:

6OY6 

Release:

2019-06-19

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.096Å R work:0.211R free:0.264

Equivalence Class: 

NR_all_99511.1 

Eq. Class Rep:

6OY6

NDB ID:

 6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_65795.49 

Eq. Class Rep:

4LFB

NDB ID:

 6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_97519.44 

Eq. Class Rep:

4Y4O

NDB ID:

 6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_42622.44 

Eq. Class Rep:

5FDV

NDB ID:

 6QNQ

PDB ID:

6QNQ 

Release:

2019-06-19

Title:

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.5Å R work:0.187R free:0.251

Equivalence Class: 

NR_all_35542.62 

Eq. Class Rep:

5L4O

NDB ID:

 6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_65795.49 

Eq. Class Rep:

4LFB

NDB ID:

 6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_97519.44 

Eq. Class Rep:

4Y4O

NDB ID:

 6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_19951.30 

Eq. Class Rep:

4YCO

NDB ID:

 6QNR

PDB ID:

6QNR 

Release:

2019-06-19

Title:

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Classification:

RIBOSOME

Authors:

Rozov, A., Khusainov, I., El Omari, K., Duman, R., Mykhaylyk, V., Yusupov, M., Westhof, E., Wagner, A., Yusupova, G.

Citation:

Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction.
Nat Commun 10 pp.2519 - 2519 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.196R free:0.253

Equivalence Class: 

NR_all_42622.44 

Eq. Class Rep:

5FDV

NDB ID:

 6JQ5

PDB ID:

6JQ5 

Release:

2019-06-12

Title:

The structure of Hatchet Ribozyme

Classification:

RNA

Authors:

Zheng, L., Falschlunger, C., Huang, K., Mairhofer, E., Yuan, S., Wang, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA 116 pp.10783 - 10791 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.059Å R work:0.192R free:0.23

Equivalence Class: 

NR_all_18859.1 

Eq. Class Rep:

6JQ5

NDB ID:

 6JQ6

PDB ID:

6JQ6 

Release:

2019-06-12

Title:

Hatchet Ribozyme Structure soaking with Ir(NH3)6+

Classification:

RNA

Authors:

Zheng, L., Falschlunger, C., Huang, K., Mairhofer, E., Yuan, S., Wang, J., Patel, D.J., Micura, R., Ren, A.

Citation:

Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA 116 pp.10783 - 10791 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.626Å R work:0.196R free:0.229

Equivalence Class: 

NR_all_85745.1 

Eq. Class Rep:

6JQ6

NDB ID:

 6K3K

PDB ID:

6K3K 

Release:

2019-06-12

Title:

Solution structure of APOBEC3G-CD2 with ssDNA, Product B

Classification:

HYDROLASE/DNA

Authors:

Yan, X., Lan, W., Wang, C., Cao, C.

Citation:

Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA.
Chem Asian J 14 pp.2235 - 2241 2019

Experiment:

 SOLUTION NMR

NDB ID:

 6N6A

PDB ID:

6N6A 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pGG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pGG
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.146R free:0.16

Equivalence Class: 

NR_all_89612.5 

Eq. Class Rep:

6N6I

NDB ID:

 6N6C

PDB ID:

6N6C 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pAA

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pAA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.619Å R work:0.146R free:0.154

Equivalence Class: 

NR_all_80570.7 

Eq. Class Rep:

6N6C

NDB ID:

 6N6D

PDB ID:

6N6D 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pAG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pAG
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.534Å R work:0.145R free:0.157

Equivalence Class: 

NR_all_94833.1 

Eq. Class Rep:

6N6D

NDB ID:

 6N6E

PDB ID:

6N6E 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pGA

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pGA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.578Å R work:0.151R free:0.158

Equivalence Class: 

NR_all_04288.2 

Eq. Class Rep:

6N6E

NDB ID:

 6N6F

PDB ID:

6N6F 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pGC

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pGC
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.735Å R work:0.154R free:0.169

Equivalence Class: 

NR_all_50478.3 

Eq. Class Rep:

6N6F

NDB ID:

 6N6G

PDB ID:

6N6G 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pCG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pCG
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.018Å R work:0.161R free:0.186

Equivalence Class: 

NR_all_08576.3 

Eq. Class Rep:

6DO8

NDB ID:

 6N6H

PDB ID:

6N6H 

Release:

2019-06-12

Title:

Vibrio cholerae Oligoribonuclease bound to pCpU

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Vibrio cholerae Oligoribonuclease bound to pCpU
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.757Å R work:0.16R free:0.183

Equivalence Class: 

NR_all_96254.1 

Eq. Class Rep:

6N6H

NDB ID:

 6N6I

PDB ID:

6N6I 

Release:

2019-06-12

Title:

Human REXO2 bound to pGG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Human REXO2 bound to pGG
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.431Å R work:0.158R free:0.178

Equivalence Class: 

NR_all_89612.5 

Eq. Class Rep:

6N6I

NDB ID:

 6N6J

PDB ID:

6N6J 

Release:

2019-06-12

Title:

Human REXO2 bound to pAA

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

TBD
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.317Å R work:0.152R free:0.17

Equivalence Class: 

NR_all_80570.7 

Eq. Class Rep:

6N6C

NDB ID:

 6N6K

PDB ID:

6N6K 

Release:

2019-06-12

Title:

Human REXO2 bound to pAG

Classification:

rna binding protein/rna

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Human REXO2 bound to pAG
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.418Å R work:0.153R free:0.172

Equivalence Class: 

NR_all_94833.1 

Eq. Class Rep:

6N6D

NDB ID:

 6QN3

PDB ID:

6QN3 

Release:

2019-06-12

Title:

Structure of the Glutamine II Riboswitch

Classification:

RNA

Authors:

Huang, L., Wang, J., Watkins, A.M., Das, R., Lilley, D.M.J.

Citation:

Structure and ligand binding of the glutamine-II riboswitch.
Nucleic Acids Res. pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.3Å R work:0.242R free:0.294

Equivalence Class: 

NR_all_12561.1 

Eq. Class Rep:

6QN3

NDB ID:

 6AAS

PDB ID:

6AAS 

Release:

2019-06-05

Title:

Solution Structure for helix 45 in 3' end of 12S rRNA

Classification:

RNA

Authors:

Liu, X.

Citation:

Solution Structure for helix 45 in 3' end of 12S rRNA
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_73700.1 

Eq. Class Rep:

6AAS

NDB ID:

 6AAU

PDB ID:

6AAU 

Release:

2019-06-05

Title:

Solution Structure for m62A helix 45 in 3' end of 12S rRNA

Classification:

RNA

Authors:

Liu, X.

Citation:

Solution Structure for m62A helix 45 in 3' end of 12S rRNA
To Be Published pp. - 0

Experiment:

 SOLUTION NMR

Equivalence Class: 

NR_all_73700.1 

Eq. Class Rep:

6AAS

NDB ID:

 6AAX

PDB ID:

6AAX 

Release:

2019-06-05

Title:

Crystal structure of TFB1M and h45 with SAM in homo sapiens

Classification:

TRANSFERASE/RNA

Authors:

Liu, X., Shen, S., Wu, P., Li, F., Wu, J., Zhang, H., Shi, Y.

Citation:

Crystal structure of TFB1M and h45 with SAM in homo sapiens
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.994Å R work:0.222R free:0.27

Equivalence Class: 

NR_all_18914.1 

Eq. Class Rep:

6AAX

NDB ID:

 6AJK

PDB ID:

6AJK 

Release:

2019-06-05

Title:

Crystal structure of TFB1M and h45 in homo sapiens

Classification:

TRANSFERASE/RNA

Authors:

Liu, X., Shen, S., Wu, P., Li, F., Wang, C., Gong, Q., Wu, J., Zhang, H., Shi, Y.

Citation:

Crystal structure of TFB1M and h45 in homo sapiens
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.001Å R work:0.196R free:0.241

Equivalence Class: 

NR_all_44743.1 

Eq. Class Rep:

6AJK

NDB ID:

 6OY5

PDB ID:

6OY5 

Release:

2019-06-05

Title:

X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Shin, Y., Murakami, K.S.

Citation:

Structural basis of reiterative transcription from the pyrG promoter
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.207R free:0.259

Equivalence Class: 

NR_all_89612.5 

Eq. Class Rep:

6N6I

NDB ID:

 6QCV

PDB ID:

6QCV 

Release:

2019-06-05

Title:

Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP

Classification:

VIRAL PROTEIN

Authors:

Kouba, T., Drncova, P., Cusack, S.

Citation:

Structural snapshots of actively transcribing influenza polymerase.
Nat.Struct.Mol.Biol. 26 pp.460 - 470 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.24Å R work:0.208R free:0.234

Equivalence Class: 

NR_all_45043.1 

Eq. Class Rep:

4WRT

NDB ID:

 6QCW

PDB ID:

6QCW 

Release:

2019-06-05

Title:

Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer

Classification:

VIRAL PROTEIN

Authors:

Kouba, T., Drncova, P., Cusack, S.

Citation:

Structural snapshots of actively transcribing influenza polymerase.
Nat.Struct.Mol.Biol. 26 pp.460 - 470 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.88Å R work:0.214R free:0.233

Equivalence Class: 

NR_all_45043.1 

Eq. Class Rep:

4WRT

NDB ID:

 6QCX

PDB ID:

6QCX 

Release:

2019-06-05

Title:

Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer

Classification:

VIRAL PROTEIN

Authors:

Kouba, T., Drncova, P., Cusack, S.

Citation:

Structural snapshots of actively transcribing influenza polymerase.
Nat.Struct.Mol.Biol. 26 pp.460 - 470 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.08Å R work:0.202R free:0.225

Equivalence Class: 

NR_all_45043.1 

Eq. Class Rep:

4WRT

NDB ID:

 6JCX

PDB ID:

6JCX 

Release:

2019-05-29

Title:

Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt RNA

Classification:

TRANSCRIPTION

Authors:

Fang, C., Li, L., Shen, L., Shi, J., Wang, S., Feng, Y., Zhang, Y.

Citation:

Structures and mechanism of transcription initiation by bacterial ECF factors.
Nucleic Acids Res. pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.903Å R work:0.21R free:0.256

Equivalence Class: 

NR_all_36524.1 

Eq. Class Rep:

6JCY

NDB ID:

 6JCY

PDB ID:

6JCY 

Release:

2019-05-29

Title:

Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E

Classification:

TRANSCRIPTION

Authors:

Fang, C., Li, L., Shen, L., Shi, J., Wang, S., Feng, Y., Zhang, Y.

Citation:

Structures and mechanism of transcription initiation by bacterial ECF factors.
Nucleic Acids Res. pp. - 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.106Å R work:0.194R free:0.238

Equivalence Class: 

NR_all_36524.1 

Eq. Class Rep:

6JCY

NDB ID:

 6R9J

PDB ID:

6R9J 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with A7 RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.326Å R work:0.247R free:0.298

Equivalence Class: 

NR_all_98950.1 

Eq. Class Rep:

6R9J

NDB ID:

 6R9M

PDB ID:

6R9M 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGAA RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.329Å R work:0.236R free:0.295

Equivalence Class: 

NR_all_67948.1 

Eq. Class Rep:

6R9M

NDB ID:

 6R9O

PDB ID:

6R9O 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGA RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

 X-RAY DIFFRACTION Resolution:3.319Å R work:0.254R free:0.309

Equivalence Class: 

NR_all_28508.1 

Eq. Class Rep:

6R9O

NDB ID:

 6R9P

PDB ID:

6R9P 

Release:

2019-05-22

Title:

Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAUUAA RNA

Classification:

HYDROLASE

Authors:

Tang, T.T.L., Stowell, J.A.W., Hill, C.H., Passmore, L.A.

Citation:

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases.
Nat.Struct.Mol.Biol. 26 pp.433 - 442 2019

Experiment:

 X-RAY DIFFRACTION Resolution:2.98Å R work:0.261R free:0.308

Equivalence Class: 

NR_all_19332.1 

Eq. Class Rep:

6R9P

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