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As of 22-Jun-2016 number of released structures: 8305
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Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 3076  Download results as an excel file       Gallery view

NDB ID:

5BWS

PDB ID:

5BWS 

Release:

2016-06-22

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)

Classification:

RNA/ANTIBIOTIC

Authors:

Kondo, J., Hanessian, S., Kanazawa, H.

Citation:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.178R free:0.232

NDB ID:

5BXK

PDB ID:

5BXK 

Release:

2016-06-22

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)

Classification:

RNA/ANTIBIOTIC

Authors:

Kondo, J., Hanessian, S., Kanazawa, H.

Citation:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.182R free:0.237

NDB ID:

5F8G

PDB ID:

5F8G 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S1 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.78Å R work:0.192R free:0.241

NDB ID:

5F8H

PDB ID:

5F8H 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S1/2 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.45Å R work:0.198R free:0.244

NDB ID:

5F8I

PDB ID:

5F8I 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.503Å R work:0.199R free:0.243

NDB ID:

5F8J

PDB ID:

5F8J 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C1S4 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.675Å R work:0.182R free:0.228

NDB ID:

5F8L

PDB ID:

5F8L 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C3S1 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.812Å R work:0.2R free:0.237

NDB ID:

5F8M

PDB ID:

5F8M 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C3S4/5 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.83Å R work:0.193R free:0.232

NDB ID:

5F8N

PDB ID:

5F8N 

Release:

2016-06-22

Title:

Enterovirus 71 Polymerase Elongation Complex (C3S6 Form)

Classification:

TRANSFERASE/RNA

Authors:

Shu, B., Gong, P.

Citation:

Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.484Å R work:0.193R free:0.234

NDB ID:

5I2D

PDB ID:

5I2D 

Release:

2016-06-22

Title:

Crystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPo

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Feng, Y., Zhang, Y., Ebright, R.H.

Citation:

Structural basis of transcription activation.
Science 352 pp.1330 - 1333 2016

Experiment:

X-RAY DIFFRACTION Resolution:4.405Å R work:0.241R free:0.284

NDB ID:

5I4L

PDB ID:

5I4L 

Release:

2016-06-22

Title:

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Classification:

RIBOSOME

Authors:

Prokhorova, I.V., Akulich, K.A., Makeeva, D.S., Osterman, I.A., Skvortsov, D.A., Sergiev, P.V., Dontsova, O.A., Yusupova, G., Yusupov, M.M., Dmitriev, S.E.

Citation:

Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome.
Sci Rep 6 pp.27720 - 27720 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.212R free:0.251

NDB ID:

5FW2

PDB ID:

5FW2 

Release:

2016-06-15

Title:

Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA

Classification:

HYDROLASE/DNA/RNA

Authors:

Anders, C., Bargsten, K., Jinek, M.

Citation:

Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell 61 pp.895 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.676Å R work:0.204R free:0.231

NDB ID:

5FW3

PDB ID:

5FW3 

Release:

2016-06-15

Title:

Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA

Classification:

HYDROLASE/DNA/RNA

Authors:

Anders, C., Bargsten, K., Jinek, M.

Citation:

Structural Plasticity of Pam Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9.
Mol.Cell 61 pp.895 - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.7Å R work:0.214R free:0.241

NDB ID:

5J0M

PDB ID:

5J0M 

Release:

2016-06-08

Title:

Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat

Classification:

VIRAL PROTEIN

Authors:

Borkar, A.N., Bardaro, M.F., Camilloni, C., Aprile, F.A., Varani, G., Vendruscolo, M.

Citation:

Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5J1O

PDB ID:

5J1O 

Release:

2016-06-08

Title:

Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat

Classification:

VIRAL PROTEIN

Authors:

Borkar, A.N., Bardaro, M.F., Camilloni, C., Aprile, F.A., Varani, G., Vendruscolo, M.

Citation:

Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5J2W

PDB ID:

5J2W 

Release:

2016-06-08

Title:

Intermediate state lying on the pathway of release of Tat from HIV-1 TAR.

Classification:

VIRAL PROTEIN

Authors:

Borkar, A.N., Bardaro, M.F., Camilloni, C., Aprile, F.A., Varani, G., Vendruscolo, M.

Citation:

Structure of a low-population binding intermediate in protein-RNA recognition.
Proc.Natl.Acad.Sci.USA pp. - 2016

Experiment:

SOLUTION NMR

NDB ID:

5DC3

PDB ID:

5DC3 

Release:

2016-06-01

Title:

Complex of yeast 80S ribosome with non-modified eIF5A

Classification:

RIBOSOME

Authors:

Melnikov, S., Mailliot, J., Shin, B.S., Rigger, L., Yusupova, G., Micura, R., Dever, T.E., Yusupov, M.

Citation:

Crystal structure of hypusine-containing translation factor eIF5A bound to a rotated eukaryotic ribosome.
J.Mol.Biol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.25Å R work:0.252R free:0.3

NDB ID:

5JAJ

PDB ID:

5JAJ 

Release:

2016-06-01

Title:

Structure of chicken LGP2 witha 5'p 10-mer dsRNA and ADP-AlF4-Mg.

Classification:

RNA BINDING PROTEIN

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.5Å R work:0.133R free:0.168

NDB ID:

5JB2

PDB ID:

5JB2 

Release:

2016-06-01

Title:

Crystal structure of chicken LGP2 with 5'ppp 10-mer dsRNA and ADP-AlF4-Mg2+ at 2.2 A resolution.

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.2Å R work:0.188R free:0.244

NDB ID:

5JBG

PDB ID:

5JBG 

Release:

2016-06-01

Title:

Crystal structure of chicken LGP2 with 5'ppp 26-mer hairpin RNA with 3' GG overhang and ADP-AlF4-Mg2+ at 2.0 A resolution.

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.0Å R work:0.217R free:0.254

NDB ID:

5JBJ

PDB ID:

5JBJ 

Release:

2016-06-01

Title:

Crystal structure of chicken LGP2 with 5'p 12-mer dsRNA at 3.6 A resolution

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.58Å R work:0.253R free:0.318

NDB ID:

5JC3

PDB ID:

5JC3 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.6 A resolution (monoclinic form, twinned).

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.271R free:0.289

NDB ID:

5JC7

PDB ID:

5JC7 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 24-mer dsRNA and ADP-Mg2+ at 2.75 A resolution.

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.29R free:0.321

NDB ID:

5JCF

PDB ID:

5JCF 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.6 A resolution (orthorhombic form).

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.276R free:0.312

NDB ID:

5JCH

PDB ID:

5JCH 

Release:

2016-06-01

Title:

Crystal structure of chicken MDA5 with 5'p 10-mer dsRNA and ADP-Mg2+ at 2.95 A resolution (untwinned).

Classification:

IMMUNE SYSTEM

Authors:

Uchikawa, E., Lethier, M., Malet, H., Brunel, J., Gerlier, D., Cusack, S.

Citation:

Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5.
Mol.Cell 62 pp.586 - 602 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.255R free:0.27

NDB ID:

5JXS

PDB ID:

5JXS 

Release:

2016-06-01

Title:

Mutant GC216/7AA of 3D polymerase from Foot-and-Mouth Disease Virus

Classification:

TRANSFERASE

Authors:

Herod, M.R., Ferrer-Orta, C., Loundras, E.A., Ward, J.C., Verdaguer, N., Rowlands, D.J., Stonehouse, N.J.

Citation:

Both Cis- and Trans- Activities of the Foot-and-Mouth Disease Virus 3D Polymerase are Essential for Viral RNA Replication.
J.Virol. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.205R free:0.264

NDB ID:

5FJ1

PDB ID:

5FJ1 

Release:

2016-05-25

Title:

Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.75Å R work:0.166R free:0.182

NDB ID:

5FJ4

PDB ID:

5FJ4 

Release:

2016-05-25

Title:

Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins

Classification:

TRANSCRIPTION

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.198R free:0.236

NDB ID:

5FJC

PDB ID:

5FJC 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:1.71Å R work:0.2R free:0.24

NDB ID:

5FK1

PDB ID:

5FK1 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.238R free:0.289

NDB ID:

5FK2

PDB ID:

5FK2 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.215R free:0.272

NDB ID:

5FK3

PDB ID:

5FK3 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.206R free:0.267

NDB ID:

5FK4

PDB ID:

5FK4 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.43Å R work:0.189R free:0.248

NDB ID:

5FK5

PDB ID:

5FK5 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.315Å R work:0.199R free:0.248

NDB ID:

5FK6

PDB ID:

5FK6 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.5Å R work:0.213R free:0.275

NDB ID:

5FKD

PDB ID:

5FKD 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.232R free:0.293

NDB ID:

5FKE

PDB ID:

5FKE 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.246R free:0.305

NDB ID:

5FKF

PDB ID:

5FKF 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.8Å R work:0.204R free:0.257

NDB ID:

5FKG

PDB ID:

5FKG 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.95Å R work:0.233R free:0.298

NDB ID:

5FKH

PDB ID:

5FKH 

Release:

2016-05-25

Title:

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU

Classification:

RNA

Authors:

Huang, L., Wang, J., Lilley, D.M.J.

Citation:

A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.65Å R work:0.23R free:0.277

NDB ID:

5IB7

PDB ID:

5IB7 

Release:

2016-05-25

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Classification:

TRANSLATION

Authors:

Rozov, A., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.99Å R work:0.201R free:0.241

NDB ID:

5IB8

PDB ID:

5IB8 

Release:

2016-05-25

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.13Å R work:0.192R free:0.243

NDB ID:

5IBB

PDB ID:

5IBB 

Release:

2016-05-25

Title:

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Classification:

RIBOSOME

Authors:

Rozov, A., Westhof, E., Yusupov, M., Yusupova, G.

Citation:

The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res. pp. - 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.96Å R work:0.2R free:0.242

NDB ID:

5J8B

PDB ID:

5J8B 

Release:

2016-05-25

Title:

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Classification:

RIBOSOME

Authors:

Gagnon, M.G., Lin, J., Steitz, T.A.

Citation:

Elongation factor 4 remodels the A-site tRNA on the ribosome.
Proc.Natl.Acad.Sci.USA 113 pp.4994 - 4999 2016

Experiment:

X-RAY DIFFRACTION Resolution:2.6Å R work:0.191R free:0.26

NDB ID:

5J4D

PDB ID:

5J4D 

Release:

2016-05-18

Title:

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Classification:

RIBOSOME

Authors:

Svidritskiy, E., Madireddy, R., Korostelev, A.A.

Citation:

Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.
J.Mol.Biol. 428 pp.2228 - 2236 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.221R free:0.256

NDB ID:

5FCI

PDB ID:

5FCI 

Release:

2016-05-11

Title:

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Classification:

Ribosome

Authors:

Mailliot, J., Garreau de Loubresse, N., Yusupova, G., Meskauskas, A., Dinman, J.D., Yusupov, M.

Citation:

Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol. 428 pp.2195 - 2202 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.4Å R work:0.234R free:0.284

NDB ID:

5FCJ

PDB ID:

5FCJ 

Release:

2016-05-11

Title:

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Classification:

RIBOSOME

Authors:

Mailliot, J., Garreau de Loubresse, N., Yusupova, G., Meskauskas, A., Dinman, J.D., Yusupov, M.

Citation:

Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol. 428 pp.2195 - 2202 2016

Experiment:

X-RAY DIFFRACTION Resolution:3.1Å R work:0.234R free:0.29

NDB ID:

4P3S

PDB ID:

4P3S 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin

Classification:

RNA/ANTIBIOTIC

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:2.3Å R work:0.219R free:0.264

NDB ID:

4P3T

PDB ID:

4P3T 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site

Classification:

RNA

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:1.6Å R work:0.247R free:0.27

NDB ID:

4P3U

PDB ID:

4P3U 

Release:

2016-05-04

Title:

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)

Classification:

RNA

Authors:

Kondo, J., Koganei, M.

Citation:

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)
To Be Published pp. - 0

Experiment:

X-RAY DIFFRACTION Resolution:3.0Å R work:0.295R free:0.302