A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Sep-2021 number of released structures: 11696
Search for released structures

RNA Search Options:

Polymer

All
RNA Only
Protein RNA Complexes
Drug RNA Complexes
Hybrids and Chimera
Peptide Nucleic Acid / Mimetics

RNA Type

All
tRNA
tRNA fragment
Ribosome
Ribozyme
Hairpin Ribozyme
Hammerhead Ribozyme
Group I intron Ribozyme
Group II intron Ribozyme
Rnase P Ribozyme
Polymerase Ribozyme
Ligase Ribozyme
Leadzyme
Ribozyme fragment
Virus
Viral fragment
Riboswitch
Riboswitch fragment
Aptamer
Telomerase RNA
Small nucleotide fragments
Double Helices
Triple Helices
Quadruple Helices

Protein Function

All
Enzymes
Structural
Regulatory

Experimental Method

All
XRAY
NMR

Representative RNA 3D Structure Sets

All RNA Structures
Representative sets of RNA-containing 3D structures
Resolution cutoff:

Text Search

Filter results by text search

Use this option to narrow your results down considerably (>50% reduction) using any word seen in the results page. Eg: Any author name found in the right side



Polymer Type: All + RNA Type: All + Protein Function: All + Experimental Method: All + RNA Sequence Type: All RNA Sequence

Results: 4321  Download results as an excel file       Gallery view

NDB ID:

 7MJV

PDB ID:

7MJV 

Release:

2021-09-15

Title:

MiaB in the complex with s-adenosylmethionine and RNA

Classification:

TRANSFERASE/RNA

Authors:

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

Citation:

Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB
Nature pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.24Å R work:0.243R free:0.272

Equivalence Class: 

NR_all_67601.1 

Eq. Class Rep:

7MJV

NDB ID:

 7MJW

PDB ID:

7MJW 

Release:

2021-09-15

Title:

Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

Classification:

TRANSFERASE/RNA

Authors:

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

Citation:

Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB
Nature pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.4Å R work:0.149R free:0.173

Equivalence Class: 

NR_all_31728.1 

Eq. Class Rep:

7MJW

NDB ID:

 7MJX

PDB ID:

7MJX 

Release:

2021-09-15

Title:

MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

Classification:

TRANSFERASE/RNA

Authors:

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

Citation:

Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB
Nature pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.5Å R work:0.148R free:0.17

Equivalence Class: 

NR_all_31728.1 

Eq. Class Rep:

7MJW

NDB ID:

 7MJY

PDB ID:

7MJY 

Release:

2021-09-15

Title:

MiaB in the complex with s-adenosyl-L-homocysteine and RNA

Classification:

TRANSFERASE/RNA

Authors:

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

Citation:

Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB
Nature pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.86Å R work:0.174R free:0.208

Equivalence Class: 

NR_all_65501.1 

Eq. Class Rep:

7MJY

NDB ID:

 7MPL

PDB ID:

7MPL 

Release:

2021-09-15

Title:

Bartonella henselae NrnC bound to pGG

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Structural characterization of NrnC identifies unifying features of dinucleotidases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.8Å R work:0.15R free:0.171

Equivalence Class: 

NR_all_98428.1 

Eq. Class Rep:

6N6I

NDB ID:

 7MPM

PDB ID:

7MPM 

Release:

2021-09-15

Title:

Bartonella henselae NrnC bound to pAA

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Structural characterization of NrnC identifies unifying features of dinucleotidases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.95Å R work:0.145R free:0.179

Equivalence Class: 

NR_all_53003.1 

Eq. Class Rep:

6N6C

NDB ID:

 7MPN

PDB ID:

7MPN 

Release:

2021-09-15

Title:

Bartonella henselae NrnC bound to pGC

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Structural characterization of NrnC identifies unifying features of dinucleotidases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.94Å R work:0.194R free:0.224

Equivalence Class: 

NR_all_65789.1 

Eq. Class Rep:

6N6F

NDB ID:

 7MPQ

PDB ID:

7MPQ 

Release:

2021-09-15

Title:

Bartonella henselae NrnC cleaving pGG in the presence of Mn2+

Classification:

RNA BINDING PROTEIN

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Structural characterization of NrnC identifies unifying features of dinucleotidases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.35Å R work:0.161R free:0.206

Equivalence Class: 

NR_all_98428.1 

Eq. Class Rep:

6N6I

NDB ID:

 7MPU

PDB ID:

7MPU 

Release:

2021-09-15

Title:

Brucella melitensis NrnC bound to pGG

Classification:

RNA BINDING PROTEIN/RNA

Authors:

Lormand, J.D., Sondermann, H.

Citation:

Structural characterization of NrnC identifies unifying features of dinucleotidases
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.72Å R work:0.155R free:0.183

Equivalence Class: 

NR_all_98428.1 

Eq. Class Rep:

6N6I

NDB ID:

 7OX7

PDB ID:

7OX7 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with TRAC chimeric RNA-DNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.209R free:0.229

NDB ID:

 7OX8

PDB ID:

7OX8 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with TRAC full RNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.75Å R work:0.209R free:0.247

Equivalence Class: 

NR_all_09588.1 

Eq. Class Rep:

7OX8

NDB ID:

 7OX9

PDB ID:

7OX9 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with AAVS1 all-RNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.45Å R work:0.194R free:0.232

Equivalence Class: 

NR_all_92730.1 

Eq. Class Rep:

7OX9

NDB ID:

 7OXA

PDB ID:

7OXA 

Release:

2021-09-15

Title:

Target-bound SpCas9 complex with AAVS1 chimeric RNA-DNA guide

Classification:

HYDROLASE

Authors:

Donohoue, P.D., Pacesa, M., Lau, E., Vidal, B., Irby, M.J., Nyer, D.B., Rotstein, T., Banh, L., Toh, M.S., Gibson, J., Kohrs, B., Baek, K., Owen, A.L.G., Slorach, E.M., van Overbeek, M., Fuller, C.K., May, A.P., Jinek, M., Cameron, P.

Citation:

Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells.
Mol.Cell 81 pp.3637 - 3649.e5 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.15Å R work:0.197R free:0.225

NDB ID:

 7JRR

PDB ID:

7JRR 

Release:

2021-09-08

Title:

Crystal structures of artificially designed homomeric RNA nanoarchitectures

Classification:

RNA

Authors:

Liu, D., Shao, Y., Piccirilli, J.A., Weizmann, Y.

Citation:

Crystal structures of artificially designed homomeric RNA nanoarchitectures
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.16Å R work:0.226R free:0.259

Equivalence Class: 

NR_all_18633.1 

Eq. Class Rep:

7JRR

NDB ID:

 7JRS

PDB ID:

7JRS 

Release:

2021-09-08

Title:

Crystal structures of artificially designed homomeric RNA nanoarchitectures

Classification:

RNA

Authors:

Liu, D., Shao, Y., Piccirilli, J.A., Weizmann, Y.

Citation:

Crystal structures of artificially designed homomeric RNA nanoarchitectures
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.21Å R work:0.274R free:0.296

Equivalence Class: 

NR_all_45061.1 

Eq. Class Rep:

7JRS

NDB ID:

 7JRT

PDB ID:

7JRT 

Release:

2021-09-08

Title:

Crystal structures of artificially designed homomeric RNA nanoarchitectures

Classification:

RNA

Authors:

Liu, D., Shao, Y., Piccirilli, J.A., Weizmann, Y.

Citation:

Crystal structures of artificially designed homomeric RNA nanoarchitectures
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.07Å R work:0.188R free:0.226

Equivalence Class: 

NR_all_51052.1 

Eq. Class Rep:

7JRT

NDB ID:

 7KUK

PDB ID:

7KUK 

Release:

2021-09-08

Title:

High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.67Å R work:0.201R free:0.22

Equivalence Class: 

NR_all_01949.4 

Eq. Class Rep:

5UED

NDB ID:

 7KUL

PDB ID:

7KUL 

Release:

2021-09-08

Title:

DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.64Å R work:0.207R free:0.246

Equivalence Class: 

NR_all_01949.4 

Eq. Class Rep:

5UED

NDB ID:

 7KUM

PDB ID:

7KUM 

Release:

2021-09-08

Title:

LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.714Å R work:0.205R free:0.22

Equivalence Class: 

NR_all_01949.4 

Eq. Class Rep:

5UED

NDB ID:

 7KUN

PDB ID:

7KUN 

Release:

2021-09-08

Title:

2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.58Å R work:0.193R free:0.23

Equivalence Class: 

NR_all_69465.1 

Eq. Class Rep:

7KUN

NDB ID:

 7KUO

PDB ID:

7KUO 

Release:

2021-09-08

Title:

FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.281Å R work:0.203R free:0.263

Equivalence Class: 

NR_all_01949.4 

Eq. Class Rep:

5UED

NDB ID:

 7KUP

PDB ID:

7KUP 

Release:

2021-09-08

Title:

2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.44Å R work:0.198R free:0.218

Equivalence Class: 

NR_all_01949.4 

Eq. Class Rep:

5UED

NDB ID:

 7LNE

PDB ID:

7LNE 

Release:

2021-09-08

Title:

ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.53Å R work:0.191R free:0.225

Equivalence Class: 

NR_all_07962.1 

Eq. Class Rep:

7LNE

NDB ID:

 7LNF

PDB ID:

7LNF 

Release:

2021-09-08

Title:

3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Szostak, J.W.

Citation:

Sugar conformation impacts on nonezymatic RNA primer extension
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.652Å R work:0.208R free:0.239

Equivalence Class: 

NR_all_07962.1 

Eq. Class Rep:

7LNE

NDB ID:

 7LNG

PDB ID:

7LNG 

Release:

2021-09-08

Title:

TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Classification:

RNA

Authors:

Giurgiu, C., Fang, Z., Aitken, H.R.M., Kim, S.C., Pazienza, L., Mittal, S., Szostak, J.W.

Citation:

Structure-activity relationships in nonenzymatic template-directed RNA synthesis.
Angew.Chem.Int.Ed.Engl. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.2Å R work:0.224R free:0.274

Equivalence Class: 

NR_all_07962.1 

Eq. Class Rep:

7LNE

NDB ID:

 7A0R

PDB ID:

7A0R 

Release:

2021-08-18

Title:

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Classification:

ANTIBIOTIC

Authors:

Breiner, E., Eyal, Z., Matzov, D., Halfon, Y., Cimicata, G., Rozenberg, H., Zimmerman, E., Bashan, A., Yonath, A.

Citation:

50S Deinococcus radiodurans ribosome bounded with mycinamicin I
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.3Å R work:0.215R free:0.249

Equivalence Class: 

NR_all_17405.8 

Eq. Class Rep:

7A0S

NDB ID:

 7A0S

PDB ID:

7A0S 

Release:

2021-08-18

Title:

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Classification:

ANTIBIOTIC

Authors:

Breiner, E., Eyal, Z., Matzov, D., Halfon, Y., Cimicata, G., Rozenberg, H., Zimmerman, E., Bashan, A., Yonath, A.

Citation:

50S Deinococcus radiodurans ribosome bounded with mycinamicin I
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:3.22Å R work:0.223R free:0.253

Equivalence Class: 

NR_all_17405.8 

Eq. Class Rep:

7A0S

NDB ID:

 7K9Y

PDB ID:

7K9Y 

Release:

2021-08-18

Title:

GsI-IIC RT Template-Switching Complex (twinned)

Classification:

RNA BINDING PROTEIN/RNA/DNA

Authors:

Lentzsch, A.M., Stamos, J.L., Yao, J., Russell, R., Lambowitz, A.M.

Citation:

Structural basis for template switching by a group II intron-encoded non-LTR-retroelement reverse transcriptase.
J.Biol.Chem. 297 pp.100971 - 100971 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.2Å R work:0.27R free:0.324

Equivalence Class: 

NR_all_06284.1 

Eq. Class Rep:

7K9Y

NDB ID:

 7MLX

PDB ID:

7MLX 

Release:

2021-08-11

Title:

SARS-CoV-2 programmed -1 frameshifting element three stem H-type pseudoknot

Classification:

RNA/IMMUNE SYSTEM

Authors:

Roman, C., Lewicka, A., Koirala, D., Li, N.S., Piccirilli, J.A.

Citation:

The SARS-CoV-2 Programmed -1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 angstrom Using Chaperone-Assisted RNA Crystallography.
Acs Chem.Biol. 16 pp.1469 - 1481 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.09Å R work:0.199R free:0.23

Equivalence Class: 

NR_all_80074.1 

Eq. Class Rep:

7MLX

NDB ID:

 7MRL

PDB ID:

7MRL 

Release:

2021-08-11

Title:

Structure of HIV-1 matrix domain bound to human tRNALys3

Classification:

VIRAL PROTEIN/RNA

Authors:

Bou-Nader, C., Muecksch, F., Brown, J.B., Gordon, J.M., York, A., Peng, C., Ghirlando, R., Summers, M.F., Bieniasz, P.D., Zhang, J.

Citation:

HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization.
Cell Host Microbe pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.15Å R work:0.185R free:0.223

Equivalence Class: 

NR_all_47714.1 

Eq. Class Rep:

7MRL

NDB ID:

 7NQ4

PDB ID:

7NQ4 

Release:

2021-08-11

Title:

Human tRNA guanine transglycosylase (TGT), RNA-bound covalent intermediate

Classification:

RNA BINDING PROTEIN

Authors:

Sievers, K., Welp, L., Urlaub, H., Ficner, R.

Citation:

Structural and functional insights into human tRNA guanine transgylcosylase
Rna Biol. pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.88Å R work:0.211R free:0.248

Equivalence Class: 

NR_all_01597.2 

Eq. Class Rep:

7NQ4

NDB ID:

 6XRQ

PDB ID:

6XRQ 

Release:

2021-07-28

Title:

Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region of Pseudorabies virus

Classification:

RNA

Authors:

Zhang, Y.S., Parkinson, G.N., Wei, D.G.

Citation:

Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region of Pseudorabies virus
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.21Å R work:0.199R free:0.216

Equivalence Class: 

NR_all_55576.1 

Eq. Class Rep:

6XRQ

NDB ID:

 7EL1

PDB ID:

7EL1 

Release:

2021-07-28

Title:

Structure of a protein from bacteria

Classification:

UNKNOWN FUNCTION

Authors:

Liu, H., Zhu, Y., Lu, Z., Huang, Z.

Citation:

Structural basis of Staphylococcus aureus Cas9 inhibition by AcrIIA14.
Nucleic Acids Res. 49 pp.6587 - 6595 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.22Å R work:0.213R free:0.242

Equivalence Class: 

NR_all_96162.2 

Eq. Class Rep:

7EL1

NDB ID:

 7OM6

PDB ID:

7OM6 

Release:

2021-07-28

Title:

Thosea asigna virus RdRP domain in complex with RNA

Classification:

VIRAL PROTEIN

Authors:

Ferrero, D.S., Falqui, M., Verdaguer, N.

Citation:

Snapshots of a Non-Canonical RdRP in Action.
Viruses 13 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.18Å R work:0.228R free:0.241

Equivalence Class: 

NR_all_02127.1 

Eq. Class Rep:

7OM7

NDB ID:

 7OM7

PDB ID:

7OM7 

Release:

2021-07-28

Title:

Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP

Classification:

VIRAL PROTEIN

Authors:

Ferrero, D.S., Falqui, M., Verdaguer, N.

Citation:

Snapshots of a Non-Canonical RdRP in Action.
Viruses 13 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.214R free:0.215

Equivalence Class: 

NR_all_02127.1 

Eq. Class Rep:

7OM7

NDB ID:

 7OMA

PDB ID:

7OMA 

Release:

2021-07-28

Title:

Thosea asigna virus RdRP domain elongation complex

Classification:

VIRAL PROTEIN

Authors:

Ferrero, D.S., Falqui, M., Verdaguer, N.

Citation:

Snapshots of a Non-Canonical RdRP in Action.
Viruses 13 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.1Å R work:0.23R free:0.257

Equivalence Class: 

NR_all_02127.1 

Eq. Class Rep:

7OM7

NDB ID:

 7NJC

PDB ID:

7NJC 

Release:

2021-07-21

Title:

Crystal structure of the Toxoplasma CPSF4 YTH-domain in complex with a 7 mer m6A-modified RNA

Classification:

RNA BINDING PROTEIN

Authors:

Farhat, D.C., Bowler, M.W., Communie, G., Pontier, D., Belmudes, L., Mas, C., Corrao, C., Coute, Y., Bougdour, A., Lagrange, T., Hakimi, M.A., Swale, C.

Citation:

A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma .
Elife 10 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:1.38Å R work:0.143R free:0.168

Equivalence Class: 

NR_all_13974.1 

Eq. Class Rep:

7NJC

NDB ID:

 7EH0

PDB ID:

7EH0 

Release:

2021-07-14

Title:

Thermus thermophilus RNA polymerase transcription initiation complex containing a template-strand purine at position TSS-2, UpA RNA primer and CMPcPP

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Skalenko, K.S., Li, L., Zhang, Y., Vvedenskaya, I.O., Winkelman, J.T., Cope, A.L., Taylor, D.M., Shah, P., Ebright, R.H., Kinney, J.B., Zhang, Y., Nickels, B.E.

Citation:

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli .
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.808Å R work:0.202R free:0.243

Equivalence Class: 

NR_all_65802.1 

Eq. Class Rep:

6D2Z

NDB ID:

 7EH1

PDB ID:

7EH1 

Release:

2021-07-14

Title:

Thermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPP

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Skalenko, K.S., Li, L., Zhang, Y., Vvedenskaya, I.O., Winkelman, J.T., Cope, A.L., Taylor, D.M., Shah, P., Ebright, R.H., Kinney, J.B., Zhang, Y., Nickels, B.E.

Citation:

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli .
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.9Å R work:0.191R free:0.252

Equivalence Class: 

NR_all_98428.1 

Eq. Class Rep:

6N6I

NDB ID:

 7EH2

PDB ID:

7EH2 

Release:

2021-07-14

Title:

Thermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primer

Classification:

TRANSCRIPTION/DNA/RNA

Authors:

Skalenko, K.S., Li, L., Zhang, Y., Vvedenskaya, I.O., Winkelman, J.T., Cope, A.L., Taylor, D.M., Shah, P., Ebright, R.H., Kinney, J.B., Zhang, Y., Nickels, B.E.

Citation:

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli .
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.34Å R work:0.2R free:0.247

Equivalence Class: 

NR_all_98428.1 

Eq. Class Rep:

6N6I

NDB ID:

 7CGF

PDB ID:

7CGF 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:1.7Å R work:0.198R free:0.221

Equivalence Class: 

NR_all_43688.1 

Eq. Class Rep:

7CGF

NDB ID:

 7CGG

PDB ID:

7CGG 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.7Å R work:0.189R free:0.237

Equivalence Class: 

NR_all_77859.1 

Eq. Class Rep:

7CGK

NDB ID:

 7CGH

PDB ID:

7CGH 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.202R free:0.246

Equivalence Class: 

NR_all_36895.1 

Eq. Class Rep:

7CGH

NDB ID:

 7CGI

PDB ID:

7CGI 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.796Å R work:0.203R free:0.248

Equivalence Class: 

NR_all_98426.1 

Eq. Class Rep:

7CGI

NDB ID:

 7CGJ

PDB ID:

7CGJ 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.546Å R work:0.19R free:0.241

Equivalence Class: 

NR_all_31724.1 

Eq. Class Rep:

7CGJ

NDB ID:

 7CGK

PDB ID:

7CGK 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.4Å R work:0.186R free:0.234

Equivalence Class: 

NR_all_77859.1 

Eq. Class Rep:

7CGK

NDB ID:

 7CGL

PDB ID:

7CGL 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.5Å R work:0.195R free:0.257

Equivalence Class: 

NR_all_25251.1 

Eq. Class Rep:

7CGL

NDB ID:

 7CGM

PDB ID:

7CGM 

Release:

2021-07-07

Title:

Crystal Structure of PUF-8 in Complex with PBE-RNA

Classification:

RNA BINDING PROTEIN

Authors:

Zheng, X., Yunyu, S., Shouhong, G.

Citation:

Crystal Structure of PUF-8 in Complex with PBE-RNA
To Be Published pp. - 0

Experiment:

 X-RAY DIFFRACTION Resolution:2.6Å R work:0.185R free:0.235

Equivalence Class: 

NR_all_24803.1 

Eq. Class Rep:

7CGM

NDB ID:

 6ZWW

PDB ID:

6ZWW 

Release:

2021-06-30

Title:

Crystal structure of E. coli RNA helicase HrpA in complex with RNA

Classification:

RNA BINDING PROTEIN

Authors:

Grass, L.M., Wollenhaupt, J., Barthel, T., Parfentev, I., Urlaub, H., Loll, B., Klauck, E., Antelmann, H., Wahl, M.C.

Citation:

Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.
Proc.Natl.Acad.Sci.USA 118 pp. - 2021

Experiment:

 X-RAY DIFFRACTION Resolution:3.16Å R work:0.225R free:0.265

Equivalence Class: 

NR_all_12236.1 

Eq. Class Rep:

6ZWW

NDB ID:

 7ELP

PDB ID:

7ELP 

Release:

2021-06-30

Title:

Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak

Classification:

RNA

Authors:

Xu, X., Egger, M., Chen, H., Bartosik, K., Micura, R., Ren, A.

Citation:

Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.
Nucleic Acids Res. 49 pp.7139 - 7153 2021

Experiment:

 X-RAY DIFFRACTION Resolution:2.79Å R work:0.215R free:0.273

Equivalence Class: 

NR_all_74244.1 

Eq. Class Rep:

7ELQ

ndbadmin@ndbserver.rutgers.edu ©1995-2021 The Nucleic Acid Database Project | Rutgers, The State University of New Jersey