A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: PD0034  PDB ID: 10MH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_5CM407:DG428_C-0.481-0.242-0.4717.538-7.152-3.941
13B_DA404:DT431_C0.06-0.2530.131-6.1385.8490.604
110B_DA412:DT423_C0.544-0.0150.2319.576-8.778-10.943
11B_DC402:DG433_C-0.021-0.3670.185-12.031-0.691-5.002
12B_DC403:DG432_C0.379-0.40.155-1.12-8.3050.673
17B_DC409:DG426_C-0.3840.027-0.2663.175-5.454-2.379
111B_DC413:DG422_C0.584-0.4490.2943.277-13.078-0.646
15B_DG406:DC429_C0.327-0.365-0.0357.195-4.277-7.468
19B_DG411:DC424_C-0.121-0.352-0.094.016-1.283-1.893
14B_DT405:DA430_C-0.1540.109-0.1537.986-4.182-4.894
18B_DT410:DA425_C-0.156-0.199-0.011.144-1.724-1.648

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.