10MH: Base Pair Morphology Parameters

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As of 4-Dec-2019 number of released structures: 10490

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NDB ID: PD0034 PDB ID: 10MH

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_5CM407:DG428_C	-0.481	-0.242	-0.471	7.538	-7.152	-3.941
1	3	B_DA404:DT431_C	0.06	-0.253	0.131	-6.138	5.849	0.604
1	10	B_DA412:DT423_C	0.544	-0.015	0.231	9.576	-8.778	-10.943
1	1	B_DC402:DG433_C	-0.021	-0.367	0.185	-12.031	-0.691	-5.002
1	2	B_DC403:DG432_C	0.379	-0.4	0.155	-1.12	-8.305	0.673
1	7	B_DC409:DG426_C	-0.384	0.027	-0.266	3.175	-5.454	-2.379
1	11	B_DC413:DG422_C	0.584	-0.449	0.294	3.277	-13.078	-0.646
1	5	B_DG406:DC429_C	0.327	-0.365	-0.035	7.195	-4.277	-7.468
1	9	B_DG411:DC424_C	-0.121	-0.352	-0.09	4.016	-1.283	-1.893
1	4	B_DT405:DA430_C	-0.154	0.109	-0.153	7.986	-4.182	-4.894
1	8	B_DT410:DA425_C	-0.156	-0.199	-0.01	1.144	-1.724	-1.648

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.