A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: BDL014  PDB ID: 111D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA4:DG21_B0.2354.0940.087-3.533-16.632-91.983
15A_DA5:DT20_B-0.243-0.2120.205-2.614-17.0691.778
16A_DA6:DT19_B0.304-0.2170.3636.296-18.6961.98
11A_DC1:DG24_B-0.298-0.3560.408-3.175-11.286-6.3
13A_DC3:DG22_B-0.834-0.1750.42-8.186-6.401-4.15
111A_DC11:DG14_B0.526-0.4620.878-2.751-21.295-8.362
12A_DG2:DC23_B-0.974-0.4060.132-0.298-12.2791.49
19A_DG9:DA16_B-0.546-3.8690.0571.83620.67585.499
110A_DG10:DC15_B0.342-0.2830.4738.441-3.161-6.516
112A_DG12:DC13_B-0.656-0.56-0.02210.24-0.591-3.206
17A_DT7:DA18_B0.655-0.1920.329-4.428-21.7914.919
18A_DT8:DA17_B0.443-0.59-0.017-0.374-20.225-0.157

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.