A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: BDL014  PDB ID: 111D 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14AA_DA4DA5:DT20DG21_BB0.0922.1633.483-1.6993.51-8.733-19.737-2.7212.405-21.683-10.499-9.563
15AA_DA5DA6:DT19DT20_BB-0.057-0.3322.973-1.5251.59339.517-0.659-0.0782.9582.3542.25339.576
16AA_DA6DT7:DA18DT19_BB-0.02-0.7223.6081.348-1.42632.058-1.0230.3033.632-2.58-2.43832.117
11AA_DC1DG2:DC23DG24_BB0.5020.3013.3463.9190.54636.160.404-0.2423.3840.876-6.2936.369
13AA_DC3DA4:DG21DG22_BB1.065-0.8342.9684.8583.1976.269-0.759-0.7312.9892.579-3.92876.456
111AA_DC11DG12:DC13DG14_BB0.5140.2613.0877.6151.19730.6550.2640.4183.1282.221-14.12531.586
12AA_DG2DC3:DG22DC23_BB0.2890.3533.518-0.2120.24839.6980.489-0.4523.5190.3650.31239.699
19AA_DG9DG10:DC15DA16_BB-2.773-1.387-0.763135.072-110.6499.185-1.3050.642-1.323-56.896-69.455174.624
110AA_DG10DC11:DG14DC15_BB-0.6690.3643.832-5.604-11.039.5551.8980.2423.665-15.7948.04641.363
17AA_DT7DT8:DA17DA18_BB-0.342-0.2493.061.3240.59439.482-0.4330.6513.0440.879-1.95939.507
18AA_DT8DG9:DA16DA17_BB-1.157-3.5482.104-175.01816.259-58.8241.71-1.2830.316-8.229-88.58-176.316

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.