A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: 142D  PDB ID: 142D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DA1:DT26_B0.185-0.130.0550.458-13.829-5.733
112A_DA12:DT15_B-0.017-0.119-0.198-15.929-3.8592.463
13A_DC3:DG24_B0.131-0.1880.165-4.679-15.55-2.208
17A_DC7:DG20_B0.24-0.1550.411-8.1211.3470.193
18A_DC8:DG19_B0.359-0.2160.214-0.837-6.833-0.846
12A_DG2:DC25_B-0.301-0.1790.5029.124-11.0620.233
16A_DG6:DC21_B-0.434-0.2160.2388.124-12.7210.081
111A_DG11:DC16_B-0.367-0.263-0.345-4.554-17.63-1.313
113A_DG13:DC14_B-0.246-0.2310.297-7.194-11.442-3.022
14A_DT4:DA23_B-0.009-0.1640.046-3.282-11.8351.079
15A_DT5:DA22_B-0.058-0.127-0.0458.481-6.334-1.908
19A_DT9:DA18_B0.047-0.184-0.127-4.495-16.172-2.945
110A_DT10:DA17_B0.067-0.148-0.0483.973-10.099-1.003

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.