A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-May-2020 number of released structures: 10752
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NDB ID: AHIB53  PDB ID: 165D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_C2:G16_B0.162-0.263-0.0275.509-11.9641.106
15A_C5:U13_B0.7330.119-0.3977.013-3.734-39.828
18A_C8:G10_B0.445-0.1950.09-3.779-6.718-0.871
11A_G1:C17_B-0.507-0.379-0.2710.915-13.4391.089
16A_G6:U12_B-2.244-0.601-0.18-0.232-12.882-1.239
17A_G7:C11_B-0.178-0.118-0.16-4.817-12.7741.012
13A_U3:G15_B2.233-0.49-0.1244.776-10.255-1.858
14A_U4:C14_B-0.6380.2060.222.0262.784-40.981

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.