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NDB ID: AHIB53  PDB ID: 165D 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
165D|1|A|C|2165D|1|A|C|20BPh
165D|1|A|C|2165D|1|A|G|1s53
165D|1|A|C|2165D|1|A|U|3s35
165D|1|A|C|2165D|1|B|G|16cWW
165D|1|A|C|5165D|1|A|C|50BPh
165D|1|A|C|5165D|1|A|G|6s35
165D|1|A|C|5165D|1|A|U|4s53
165D|1|A|C|5165D|1|B|U|13cWW
165D|1|A|C|8165D|1|A|C|80BPh
165D|1|A|C|8165D|1|A|G|7s53
165D|1|A|C|8165D|1|B|G|10cWW
165D|1|A|G|1165D|1|A|C|2s35
165D|1|A|G|1165D|1|A|G|10BPh
165D|1|A|G|1165D|1|B|C|17cWW
165D|1|A|G|6165D|1|A|C|5s53
165D|1|A|G|6165D|1|A|G|60BPh
165D|1|A|G|6165D|1|A|G|7s35
165D|1|A|G|6165D|1|B|U|12cWW
165D|1|A|G|6165D|1|B|U|13s55
165D|1|A|G|7165D|1|A|C|8s35
165D|1|A|G|7165D|1|A|G|6s53
165D|1|A|G|7165D|1|A|G|70BPh
165D|1|A|G|7165D|1|B|C|11cWW
165D|1|A|G|7165D|1|B|U|12s55
165D|1|A|U|3165D|1|A|C|2s53
165D|1|A|U|3165D|1|A|U|30BPh
165D|1|A|U|3165D|1|B|G|15cWW
165D|1|A|U|3165D|1|B|G|16s55
165D|1|A|U|4165D|1|A|C|5s35
165D|1|A|U|4165D|1|A|U|3
165D|1|A|U|4165D|1|A|U|40BPh
165D|1|A|U|4165D|1|B|C|14cWW
165D|1|A|U|4165D|1|B|G|15s55
165D|1|B|C|11165D|1|A|G|7cWW
165D|1|B|C|11165D|1|B|C|110BPh
165D|1|B|C|11165D|1|B|G|10s53
165D|1|B|C|11165D|1|B|U|12s35
165D|1|B|C|14165D|1|A|U|4cWW
165D|1|B|C|14165D|1|B|C|140BPh
165D|1|B|C|14165D|1|B|G|15s35
165D|1|B|C|14165D|1|B|U|13s53
165D|1|B|C|17165D|1|A|G|1cWW
165D|1|B|C|17165D|1|B|C|170BPh
165D|1|B|C|17165D|1|B|G|16s53
165D|1|B|G|10165D|1|A|C|8cWW
165D|1|B|G|10165D|1|B|C|11s35
165D|1|B|G|10165D|1|B|G|100BPh
165D|1|B|G|15165D|1|A|U|3cWW
165D|1|B|G|15165D|1|A|U|4s55
165D|1|B|G|15165D|1|B|C|14s53
165D|1|B|G|15165D|1|B|G|15n0BP
165D|1|B|G|15165D|1|B|G|16s35
165D|1|B|G|16165D|1|A|C|2cWW
165D|1|B|G|16165D|1|A|U|3s55
165D|1|B|G|16165D|1|B|C|17s35
165D|1|B|G|16165D|1|B|G|15s53
165D|1|B|G|16165D|1|B|G|160BPh
165D|1|B|U|12165D|1|A|G|6cWW
165D|1|B|U|12165D|1|A|G|7s55
165D|1|B|U|12165D|1|B|C|11s53
165D|1|B|U|12165D|1|B|U|120BPh
165D|1|B|U|12165D|1|B|U|13ns35
165D|1|B|U|13165D|1|A|C|5cWW
165D|1|B|U|13165D|1|A|G|6s55
165D|1|B|U|13165D|1|B|C|14s35
165D|1|B|U|13165D|1|B|U|12ns53
165D|1|B|U|13165D|1|B|U|130BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (15)Relative Frequency
0BPh151.000
Base-StackingCount (10)Relative Frequency
s5360.600
s5540.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)