170D: Base Pair Morphology Parameters

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NDB ID: 170D PDB ID: 170D

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	9	A_CAR9:DG16_B	0.83	-0.27	-0.174	-2.439	-5.457	2.983
1	5	A_DA5:DT20_B	0.785	0.198	-0.255	-3.614	3.25	-6.57
1	6	A_DA6:DT19_B	0.769	-0.004	-0.506	4.306	-20.805	0.44
1	1	A_DC1:DG24_B	0.627	-0.252	-0.565	-5.74	-3.383	-0.631
1	3	A_DC3:DG22_B	0.243	0.019	-0.635	2.239	-11.44	3.3
1	11	A_DC11:DG14_B	-0.382	-0.071	-0.609	0.194	-7.459	6.975
1	2	A_DG2:DC23_B	0.178	0.101	-0.593	-0.157	-7.453	6.927
1	4	A_DG4:CAR21_B	-0.792	-0.008	-0.155	2.482	-5.294	3.014
1	10	A_DG10:DC15_B	-0.317	-0.233	-0.635	-2.216	-11.236	3.341
1	12	A_DG12:DC13_B	-0.877	-0.297	-0.494	5.673	-3.471	-0.662
1	7	A_DT7:DA18_B	-0.51	-0.066	-0.492	-4.273	-20.976	0.444
1	8	A_DT8:DA17_B	-0.607	0.003	-0.279	3.625	3.265	-6.551

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.