170D: Base Pair Morphology Step Parameters

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NDB ID: 170D PDB ID: 170D

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	9	AA_CAR9DG10:DC15DG16_BB	-0.397	-0.821	3.982	2.945	3.644	24.953	-3.124	1.916	3.754	8.339	-6.739	25.383
1	5	AA_DA5DA6:DT19DT20_BB	0.026	-0.737	3.319	3.949	-6.601	34.795	-0.209	0.552	3.381	-10.873	-6.506	35.61
1	6	AA_DA6DT7:DA18DT19_BB	0.002	-1.186	2.94	0.029	6.682	26.867	-3.867	0.001	2.575	14.106	-0.061	27.67
1	1	AA_DC1DG2:DC23DG24_BB	0.279	-0.578	5.044	-1.544	-19.978	30.882	3.476	-0.783	4.564	-33.467	2.586	36.68
1	3	AA_DC3DG4:CAR21DG22_BB	0.404	-0.822	3.982	-2.986	3.617	24.929	-3.119	-1.949	3.753	8.286	6.84	25.359
1	11	AA_DC11DG12:DC13DG14_BB	-0.28	-0.576	5.047	1.524	-19.921	30.887	3.474	0.781	4.568	-33.386	-2.553	36.653
1	2	AA_DG2DC3:DG22DC23_BB	-0.425	-1.101	2.823	0.004	4.389	33.666	-2.477	0.728	2.663	7.538	-0.006	33.943
1	4	AA_DG4DA5:DT20CAR21_BB	0.036	-1.546	3.06	1.757	6.552	33.578	-3.547	0.185	2.718	11.199	-3.004	34.237
1	10	AA_DG10DC11:DG14DC15_BB	0.426	-1.101	2.824	0.099	4.423	33.656	-2.483	-0.716	2.663	7.597	-0.17	33.937
1	7	AA_DT7DT8:DA17DA18_BB	-0.022	-0.736	3.319	-3.897	-6.555	34.81	-0.216	-0.551	3.381	-10.797	6.419	35.611
1	8	AA_DT8CAR9:DG16DA17_BB	-0.034	-1.546	3.062	-1.709	6.535	33.539	-3.55	-0.182	2.719	11.184	2.924	34.193

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.