1A0A: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PDT046 PDB ID: 1A0A

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DA4:DT14_D	-0.17	-0.276	-0.022	0.014	-0.042	-10.728
1	6	C_DA6:DT12_D	-0.009	-0.438	-0.002	9.451	0.762	11.096
1	13	C_DA13:DT5_D	0.224	0.045	-0.036	0.45	1.477	-11.02
1	16	C_DA16:DT2_D	0.416	0.055	0.566	-12.979	23.357	5.635
1	1	C_DC1:DG17_D	0.244	-0.52	-1.69	22.992	0.407	0.642
1	3	C_DC3:DG15_D	0.598	-0.262	-0.003	-0.013	0.021	-0.703
1	5	C_DC5:DG13_D	0.276	-0.237	0.349	-7.88	-12.571	-0.262
1	7	C_DC7:DG11_D	-0.084	-0.082	-0.151	9.409	15.254	3.509
1	14	C_DC14:DG4_D	-0.091	0.104	0.012	-0.318	0.531	0.894
1	8	C_DG8:DC10_D	0.288	-0.252	0.01	-5.625	23.22	0.806
1	10	C_DG10:DC8_D	-0.215	0.315	-0.266	4.064	1.266	-0.945
1	11	C_DG11:DC7_D	-0.088	-0.152	-0.036	14.093	6.558	0.364
1	12	C_DG12:DC6_D	0.263	-0.366	-0.017	-0.024	0.303	-5.332
1	17	C_DG17:DC1_D	-0.035	-0.057	-0.32	-14.894	4.512	1.092
1	2	C_DT2:DA16_D	0.146	-0.073	-0.845	8.118	6.146	-5.751
1	9	C_DT9:DA9_D	-0.215	-0.264	0.377	-13.488	6.776	8.061
1	15	C_DT15:DA3_D	-0.105	0.07	0.271	1.274	10.999	1.423

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.