A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PDT046  PDB ID: 1A0A 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA4:DT14_D-0.17-0.276-0.0220.014-0.042-10.728
16C_DA6:DT12_D-0.009-0.438-0.0029.4510.76211.096
113C_DA13:DT5_D0.2240.045-0.0360.451.477-11.02
116C_DA16:DT2_D0.4160.0550.566-12.97923.3575.635
11C_DC1:DG17_D0.244-0.52-1.6922.9920.4070.642
13C_DC3:DG15_D0.598-0.262-0.003-0.0130.021-0.703
15C_DC5:DG13_D0.276-0.2370.349-7.88-12.571-0.262
17C_DC7:DG11_D-0.084-0.082-0.1519.40915.2543.509
114C_DC14:DG4_D-0.0910.1040.012-0.3180.5310.894
18C_DG8:DC10_D0.288-0.2520.01-5.62523.220.806
110C_DG10:DC8_D-0.2150.315-0.2664.0641.266-0.945
111C_DG11:DC7_D-0.088-0.152-0.03614.0936.5580.364
112C_DG12:DC6_D0.263-0.366-0.017-0.0240.303-5.332
117C_DG17:DC1_D-0.035-0.057-0.32-14.8944.5121.092
12C_DT2:DA16_D0.146-0.073-0.8458.1186.146-5.751
19C_DT9:DA9_D-0.215-0.2640.377-13.4886.7768.061
115C_DT15:DA3_D-0.1050.070.2711.27410.9991.423

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.