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As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PDT046
PDB ID:
1A0A
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
C_DA4:DT14_D
-0.17
-0.276
-0.022
0.014
-0.042
-10.728
1
6
C_DA6:DT12_D
-0.009
-0.438
-0.002
9.451
0.762
11.096
1
13
C_DA13:DT5_D
0.224
0.045
-0.036
0.45
1.477
-11.02
1
16
C_DA16:DT2_D
0.416
0.055
0.566
-12.979
23.357
5.635
1
1
C_DC1:DG17_D
0.244
-0.52
-1.69
22.992
0.407
0.642
1
3
C_DC3:DG15_D
0.598
-0.262
-0.003
-0.013
0.021
-0.703
1
5
C_DC5:DG13_D
0.276
-0.237
0.349
-7.88
-12.571
-0.262
1
7
C_DC7:DG11_D
-0.084
-0.082
-0.151
9.409
15.254
3.509
1
14
C_DC14:DG4_D
-0.091
0.104
0.012
-0.318
0.531
0.894
1
8
C_DG8:DC10_D
0.288
-0.252
0.01
-5.625
23.22
0.806
1
10
C_DG10:DC8_D
-0.215
0.315
-0.266
4.064
1.266
-0.945
1
11
C_DG11:DC7_D
-0.088
-0.152
-0.036
14.093
6.558
0.364
1
12
C_DG12:DC6_D
0.263
-0.366
-0.017
-0.024
0.303
-5.332
1
17
C_DG17:DC1_D
-0.035
-0.057
-0.32
-14.894
4.512
1.092
1
2
C_DT2:DA16_D
0.146
-0.073
-0.845
8.118
6.146
-5.751
1
9
C_DT9:DA9_D
-0.215
-0.264
0.377
-13.488
6.776
8.061
1
15
C_DT15:DA3_D
-0.105
0.07
0.271
1.274
10.999
1.423
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.