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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PDT046
PDB ID:
1A0A
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
4
CC_DA4DC5:DG13DT14_DD
0.165
-1.233
4.856
1.663
-0.956
31.355
-2.01
0.159
4.893
-1.767
-3.073
31.412
1
6
CC_DA6DC7:DG11DT12_DD
-0.986
-0.605
3.085
3.083
7.368
37.339
-1.777
1.865
2.832
11.35
-4.749
38.154
1
13
CC_DA13DC14:DG4DT5_DD
0.476
-1.732
3.448
-3.484
-0.763
26.924
-3.488
-1.937
3.408
-1.63
7.441
27.155
1
16
CC_DA16DG17:DC1DT2_DD
-0.012
-1.532
3.7
8.235
-0.459
32.37
-2.581
1.571
3.609
-0.807
-14.48
33.377
1
1
CC_DC1DT2:DA16DG17_DD
0.431
0.636
3.898
4.217
13.398
27.881
-2.008
0.203
3.822
25.834
-8.131
31.156
1
3
CC_DC3DA4:DT14DG15_DD
0.16
0.277
2.592
0.328
9.783
26.193
-1.309
-0.269
2.53
20.691
-0.693
27.932
1
5
CC_DC5DA6:DT12DG13_DD
0.978
2.16
2.446
-2.587
-2.834
37.599
3.596
-1.748
2.213
-4.384
4.001
37.787
1
7
CC_DC7DG8:DC10DG11_DD
0.003
0.106
4.907
-2.79
13.358
37.967
-2.133
-0.482
4.672
19.769
4.128
40.26
1
14
CC_DC14DT15:DA3DG4_DD
0.68
-0.306
3.386
0.351
-15.781
34.754
1.657
-0.995
3.229
-24.892
-0.554
38.07
1
8
CC_DG8DT9:DA9DC10_DD
0.734
-0.307
3.365
-1.893
-1.492
32.225
-0.28
-1.662
3.328
-2.684
3.405
32.313
1
10
CC_DG10DG11:DC7DC8_DD
1.882
-1.17
2.837
-1.44
10.916
29.588
-3.766
-3.676
2.186
20.502
2.704
31.528
1
11
CC_DG11DG12:DC6DC7_DD
-2.067
1.048
3.474
-3.518
20.025
30.49
-1.647
2.716
3.671
33.775
5.933
36.513
1
12
CC_DG12DA13:DT5DC6_DD
-1.784
-1.038
3.341
-14.986
10.598
39.086
-2.553
0.824
3.399
14.884
21.047
43.029
1
2
CC_DT2DC3:DG15DA16_DD
0.617
-1.033
3.328
0.285
22.681
36.009
-3.609
-0.827
2.316
32.977
-0.414
42.357
1
9
CC_DT9DG10:DC8DA9_DD
-0.826
0.526
2.666
6.787
-4.175
25.444
1.984
3.161
2.26
-9.195
-14.949
26.643
1
15
CC_DT15DA16:DT2DA3_DD
-0.346
-0.265
3.451
-2.707
13.631
36.486
-2.129
0.176
3.173
20.864
4.143
38.959
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.