A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PDT046  PDB ID: 1A0A 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DA4DC5:DG13DT14_DD0.165-1.2334.8561.663-0.95631.355-2.010.1594.893-1.767-3.07331.412
16CC_DA6DC7:DG11DT12_DD-0.986-0.6053.0853.0837.36837.339-1.7771.8652.83211.35-4.74938.154
113CC_DA13DC14:DG4DT5_DD0.476-1.7323.448-3.484-0.76326.924-3.488-1.9373.408-1.637.44127.155
116CC_DA16DG17:DC1DT2_DD-0.012-1.5323.78.235-0.45932.37-2.5811.5713.609-0.807-14.4833.377
11CC_DC1DT2:DA16DG17_DD0.4310.6363.8984.21713.39827.881-2.0080.2033.82225.834-8.13131.156
13CC_DC3DA4:DT14DG15_DD0.160.2772.5920.3289.78326.193-1.309-0.2692.5320.691-0.69327.932
15CC_DC5DA6:DT12DG13_DD0.9782.162.446-2.587-2.83437.5993.596-1.7482.213-4.3844.00137.787
17CC_DC7DG8:DC10DG11_DD0.0030.1064.907-2.7913.35837.967-2.133-0.4824.67219.7694.12840.26
114CC_DC14DT15:DA3DG4_DD0.68-0.3063.3860.351-15.78134.7541.657-0.9953.229-24.892-0.55438.07
18CC_DG8DT9:DA9DC10_DD0.734-0.3073.365-1.893-1.49232.225-0.28-1.6623.328-2.6843.40532.313
110CC_DG10DG11:DC7DC8_DD1.882-1.172.837-1.4410.91629.588-3.766-3.6762.18620.5022.70431.528
111CC_DG11DG12:DC6DC7_DD-2.0671.0483.474-3.51820.02530.49-1.6472.7163.67133.7755.93336.513
112CC_DG12DA13:DT5DC6_DD-1.784-1.0383.341-14.98610.59839.086-2.5530.8243.39914.88421.04743.029
12CC_DT2DC3:DG15DA16_DD0.617-1.0333.3280.28522.68136.009-3.609-0.8272.31632.977-0.41442.357
19CC_DT9DG10:DC8DA9_DD-0.8260.5262.6666.787-4.17525.4441.9843.1612.26-9.195-14.94926.643
115CC_DT15DA16:DT2DA3_DD-0.346-0.2653.451-2.70713.63136.486-2.1290.1763.17320.8644.14338.959

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.