1A51: Base Pair Morphology Parameters

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NDB ID: 1A51 PDB ID: 1A51

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_A73:U103_A	-3.55	-1.0	-0.023	2.884	-10.184	-108.003
1	11	A_A78:G98_A	-6.757	-4.333	-0.148	3.284	-0.22	0.735
1	3	A_C70:G106_A	0.743	-0.371	-0.219	3.116	-0.027	-0.448
1	4	A_C71:G105_A	0.236	-0.248	-0.279	-5.038	-5.757	2.351
1	1	A_G68:C108_A	-0.394	-0.25	0.043	-0.6	-3.479	0.41
1	2	A_G69:C107_A	-0.892	-0.447	-0.115	-2.016	0.245	0.791
1	5	A_G72:A104_A	6.909	-3.933	0.188	4.08	-1.333	-4.157
1	8	A_G75:A101_A	-2.011	2.182	-0.092	-1.291	-2.036	-70.262
1	9	A_G76:G100_A	4.433	0.927	-0.314	2.725	0.241	-95.071
1	12	A_G79:C97_A	-0.822	-0.44	-0.254	-2.535	-6.681	1.697
1	14	A_G81:U95_A	-1.089	-0.736	-1.078	-10.725	-8.76	-5.646
1	16	A_G83:C93_A	-0.397	-0.751	0.888	5.084	-16.718	-8.434
1	17	A_G84:C92_A	-0.344	-0.263	-0.066	-0.551	-9.955	-0.041
1	18	A_G85:C91_A	-0.979	-0.45	-0.046	-6.994	-5.108	1.449
1	19	A_G86:C90_A	0.842	2.197	-1.197	-10.347	6.482	53.777
1	7	A_U74:G102_A	-4.202	0.992	-0.425	-4.942	-7.955	-93.93
1	10	A_U77:A99_A	3.991	-1.669	-0.477	2.904	-6.535	-94.504
1	13	A_U80:G96_A	1.531	-0.379	0.45	3.385	-7.621	-4.524
1	15	A_U82:A94_A	0.062	-0.244	0.077	1.559	-6.516	0.642

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.