1AAY: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: PDT039 PDB ID: 1AAY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	B_DC3:DG60_C	0.415	-0.152	-0.301	10.04	-6.567	0.47
1	8	B_DC9:DG54_C	0.255	-0.133	-0.269	3.223	-5.272	-0.791
1	1	B_DG2:DC61_C	-0.13	-0.165	-0.276	-8.167	-1.965	1.426
1	3	B_DG4:DC59_C	-0.263	-0.22	0.108	-1.702	-6.214	-1.835
1	5	B_DG6:DC57_C	-0.31	-0.134	0.114	3.146	-10.43	1.417
1	6	B_DG7:DC56_C	-0.307	-0.161	-0.101	-3.966	-9.233	-2.316
1	7	B_DG8:DC55_C	-0.219	-0.216	-0.105	-3.668	-13.523	-1.143
1	9	B_DG10:DC53_C	-0.086	-0.213	-0.025	3.612	-8.114	-3.186
1	4	B_DT5:DA58_C	-0.084	-0.23	-0.022	0.277	-6.127	-0.008
1	10	B_DT11:DA52_C	0.053	-0.233	-0.32	6.529	-7.147	2.635

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.