A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PDT039  PDB ID: 1AAY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DC3:DG60_C0.415-0.152-0.30110.04-6.5670.47
18B_DC9:DG54_C0.255-0.133-0.2693.223-5.272-0.791
11B_DG2:DC61_C-0.13-0.165-0.276-8.167-1.9651.426
13B_DG4:DC59_C-0.263-0.220.108-1.702-6.214-1.835
15B_DG6:DC57_C-0.31-0.1340.1143.146-10.431.417
16B_DG7:DC56_C-0.307-0.161-0.101-3.966-9.233-2.316
17B_DG8:DC55_C-0.219-0.216-0.105-3.668-13.523-1.143
19B_DG10:DC53_C-0.086-0.213-0.0253.612-8.114-3.186
14B_DT5:DA58_C-0.084-0.23-0.0220.277-6.127-0.008
110B_DT11:DA52_C0.053-0.233-0.326.529-7.1472.635

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.