1AAY: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PDT039 PDB ID: 1AAY

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	BB_DC3DG4:DC59DG60_CC	-0.946	-0.209	3.487	-7.226	7.822	36.165	-1.43	0.444	3.487	12.276	11.341	37.65
1	8	BB_DC9DG10:DC53DG54_CC	-1.138	0.307	3.37	-4.495	6.054	33.67	-0.48	1.179	3.489	10.292	7.642	34.48
1	1	BB_DG2DC3:DG60DC61_CC	0.33	-0.169	2.898	0.825	5.687	25.991	-1.685	-0.526	2.807	12.45	-1.807	26.608
1	3	BB_DG4DT5:DA58DC59_CC	0.537	-0.63	3.465	1.241	5.497	27.902	-2.597	-0.795	3.302	11.255	-2.54	28.454
1	5	BB_DG6DG7:DC56DC57_CC	-0.811	-0.933	3.541	-0.664	3.282	30.631	-2.442	1.387	3.441	6.19	1.252	30.809
1	6	BB_DG7DG8:DC55DC56_CC	-0.076	-0.375	3.398	-2.042	11.062	35.225	-2.125	-0.163	3.142	17.73	3.272	36.923
1	7	BB_DG8DC9:DG54DC55_CC	0.706	-0.271	3.176	2.519	-2.183	30.761	-0.094	-0.844	3.234	-4.1	-4.732	30.937
1	9	BB_DG10DT11:DA52DC53_CC	1.053	-0.529	3.367	2.084	2.144	31.405	-1.386	-1.535	3.386	3.95	-3.839	31.544
1	4	BB_DT5DG6:DC57DA58_CC	-0.943	-0.106	3.305	-5.551	3.485	34.127	-0.728	0.703	3.385	5.87	9.352	34.732

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.