1AKX: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 1AKX PDB ID: 1AKX

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_A20:U42_A	0.066	-0.291	0.839	0.732	-14.127	0.75
1	7	A_A22:U40_A	0.275	-0.291	0.782	-7.025	-25.893	-12.391
1	9	A_A27:U38_A	-0.181	-0.171	0.5	-2.69	-6.248	-4.816
1	3	A_C18:G44_A	-0.393	-0.073	0.357	-0.04	-14.641	-0.764
1	4	A_C19:G43_A	-0.389	-0.084	0.494	2.523	-16.093	-1.218
1	11	A_C29:G36_A	1.213	-0.426	0.037	14.752	-20.906	-2.367
1	1	A_G16:C46_A	-0.968	-0.155	-0.5	-27.968	-19.553	2.084
1	2	A_G17:C45_A	-0.109	-0.095	0.306	-10.747	-13.02	1.532
1	6	A_G21:C41_A	0.1	-0.156	0.473	-1.954	-20.319	1.886
1	8	A_G26:C39_A	-0.887	-0.332	0.201	-15.655	-21.388	-4.695
1	10	A_G28:C37_A	-0.083	-0.145	0.781	14.424	-9.949	-2.587
1	12	A_G32:G33_A	-6.437	0.602	2.155	-39.643	-21.089	-4.402

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.