Download
Software
Tools
Education
Standards
About NDB
A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search DNA
Search RNA
Advanced Search
Search for released structures
NDB ID:
1AKX
PDB ID:
1AKX
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
5
A_A20:U42_A
0.066
-0.291
0.839
0.732
-14.127
0.75
1
7
A_A22:U40_A
0.275
-0.291
0.782
-7.025
-25.893
-12.391
1
9
A_A27:U38_A
-0.181
-0.171
0.5
-2.69
-6.248
-4.816
1
3
A_C18:G44_A
-0.393
-0.073
0.357
-0.04
-14.641
-0.764
1
4
A_C19:G43_A
-0.389
-0.084
0.494
2.523
-16.093
-1.218
1
11
A_C29:G36_A
1.213
-0.426
0.037
14.752
-20.906
-2.367
1
1
A_G16:C46_A
-0.968
-0.155
-0.5
-27.968
-19.553
2.084
1
2
A_G17:C45_A
-0.109
-0.095
0.306
-10.747
-13.02
1.532
1
6
A_G21:C41_A
0.1
-0.156
0.473
-1.954
-20.319
1.886
1
8
A_G26:C39_A
-0.887
-0.332
0.201
-15.655
-21.388
-4.695
1
10
A_G28:C37_A
-0.083
-0.145
0.781
14.424
-9.949
-2.587
1
12
A_G32:G33_A
-6.437
0.602
2.155
-39.643
-21.089
-4.402
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.