A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 1AKX  PDB ID: 1AKX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A20:U42_A0.066-0.2910.8390.732-14.1270.75
17A_A22:U40_A0.275-0.2910.782-7.025-25.893-12.391
19A_A27:U38_A-0.181-0.1710.5-2.69-6.248-4.816
13A_C18:G44_A-0.393-0.0730.357-0.04-14.641-0.764
14A_C19:G43_A-0.389-0.0840.4942.523-16.093-1.218
111A_C29:G36_A1.213-0.4260.03714.752-20.906-2.367
11A_G16:C46_A-0.968-0.155-0.5-27.968-19.5532.084
12A_G17:C45_A-0.109-0.0950.306-10.747-13.021.532
16A_G21:C41_A0.1-0.1560.473-1.954-20.3191.886
18A_G26:C39_A-0.887-0.3320.201-15.655-21.388-4.695
110A_G28:C37_A-0.083-0.1450.78114.424-9.949-2.587
112A_G32:G33_A-6.4370.6022.155-39.643-21.089-4.402

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.