1AQ3: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: PRV008 PDB ID: 1AQ3

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	R_A3:U17_R	-0.405	-0.429	0.435	5.491	-19.367	3.959
1	3	R_G5:C15_R	-0.873	-0.534	-0.034	11.017	-5.491	-0.544
1	4	R_G7:C14_R	-1.125	-0.554	0.211	3.194	-8.923	-3.718
1	5	R_G8:C13_R	-1.025	0.035	-0.085	3.148	4.391	3.656
1	2	R_U4:A16_R	0.061	-0.412	0.233	-2.171	-13.715	1.493
1	6	S_G5:C15_S	-0.71	-0.422	0.497	3.412	-18.568	-1.65
1	7	S_G7:C14_S	-0.607	-0.122	-0.107	-6.174	-11.478	-4.317
1	8	S_G8:C13_S	0.286	-0.06	0.125	7.77	-1.203	-4.5

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.