A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 1ARJ  PDB ID: 1ARJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14N_A20:U42_N-0.16-0.346-0.0226.853-19.806-0.555
16N_A22:U40_N-0.205-0.4080.843-10.518-18.45-13.641
18N_A27:U38_N0.863-0.071-0.727-17.695-14.087-9.414
13N_C19:G43_N0.15-0.211.1092.096-10.391-8.955
110N_C29:G36_N1.025-0.471-0.5637.584-16.8813.148
11N_G17:C45_N1.083-1.5371.708-26.529-39.828-54.636
12N_G18:C44_N-1.459-0.5271.36747.721-28.538-4.034
15N_G21:C41_N-1.315-0.4730.262-0.996-25.914-0.121
17N_G26:C39_N-0.515-0.314-0.514-20.924-5.3920.182
19N_G28:C37_N-0.153-0.3290.067-3.565.512-3.727

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.