A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: PTR005  PDB ID: 1ASY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18R_5MC649:G665_R-0.24-0.1930.5936.382-8.783-3.686
113R_5MU654:A658_R4.202-2.199-0.079-4.4786.745-93.473
17R_A607:U666_R-0.136-0.1980.5268.301-8.512-1.683
126R_A614:U608_R-4.055-2.2590.7913.55710.461-95.796
127R_A615:U648_R0.0411.0050.224-4.1016.273164.076
121R_A644:G626_R0.1341.052-1.598-16.604-11.94-23.554
12R_C602:G671_R0.003-0.2670.1958.833-13.567-4.758
13R_C603:G670_R0.157-0.188-0.2136.613-14.495-1.567
115R_C638:PSU632_R-4.255-1.926-1.82311.731-18.205-15.729
119R_C642:G628_R0.213-0.1830.205-10.964-8.078-2.668
120R_C643:G627_R0.217-0.162-0.3345.962-7.567-1.425
14R_G604:C669_R-0.276-0.194-0.052-10.656-16.1561.912
16R_G606:C667_R-0.187-0.2460.386-12.371-12.031-3.567
122R_G610:U625_R-2.38-0.6730.033-0.882-6.191-1.288
128R_G618:C656_R0.757-0.4870.599-14.844-9.949-8.565
116R_G639:C631_R-0.062-0.243-0.66-5.80513.036-3.751
118R_G641:C629_R-0.424-0.173-1.677-39.229-20.4691.898
19R_G650:C664_R0.078-0.177-0.007-3.145-5.440.458
110R_G651:C663_R-0.197-0.258-0.088-5.722-8.125-3.58
111R_G652:C662_R0.054-0.208-0.741-8.692-10.0111.377
112R_G653:C661_R-0.495-0.187-0.392-16.822-9.912-0.065
125R_PSU613:G622_R2.02-0.3670.0413.234-0.8662.897
114R_PSU655:G617_R0.235-4.8580.48417.9869.713-112.511
11R_U601:A672_R0.206-0.0890.10718.745-14.881-3.791
15R_U605:G668_R2.352-0.629-0.1883.45-12.0191.024
123R_U611:A624_R-0.39-0.179-0.1585.379-12.453.114
124R_U612:A623_R0.025-0.1260.223-4.8564.866-3.806
117R_U640:G630_R2.151-0.518-0.9155.3993.8011.19
136S_5MC649:G665_S0.068-0.1480.2153.8383.673-0.846
141S_5MU654:A658_S3.833-1.757-0.723-2.9362.698-99.638
135S_A607:U666_S0.191-0.0330.187-13.203-0.825-5.209
153S_A614:U608_S-4.116-2.3080.893.93414.195-94.864
154S_A615:U648_S0.2751.2220.1012.023-0.974169.978
148S_A644:G626_S0.3591.156-0.716-9.958-8.964-14.198
130S_C602:G671_S-0.059-0.196-0.4797.292-11.836-0.452
131S_C603:G670_S-0.371-0.103-0.21711.634-3.737-1.597
146S_C642:G628_S0.195-0.2140.56-7.603-10.181-4.426
147S_C643:G627_S0.387-0.2260.024-4.119-10.283-5.259
132S_G604:C669_S0.12-0.131-0.132-7.419-17.454-2.023
134S_G606:C667_S-0.105-0.1770.386-9.393-1.194-1.275
149S_G610:U625_S-2.239-0.7040.052-1.262-2.65-1.29
156S_G618:C656_S0.265-0.597-0.40616.713-17.4933.786
143S_G639:C631_S-0.517-0.299-0.38312.172-7.5342.596
145S_G641:C629_S-0.133-0.042-0.77-34.751-19.5360.199
137S_G650:C664_S-0.248-0.261-0.514-2.652-6.952-1.583
138S_G651:C663_S-0.093-0.218-0.883-15.737-8.509-3.35
139S_G652:C662_S-0.132-0.234-0.943-13.918-3.834-3.162
140S_G653:C661_S-0.422-0.206-0.442-19.649-11.8631.017
155S_H2U616:U659_S-2.656-2.9490.5344.989-8.794-175.043
152S_PSU613:G622_S1.768-0.458-0.0626.539-5.463-3.896
142S_PSU655:G617_S0.643-4.382-0.48222.9282.006-110.6
129S_U601:A672_S0.203-0.138-0.4828.971-7.131-1.819
133S_U605:G668_S2.092-0.4770.701-3.927-13.4021.668
150S_U611:A624_S-0.108-0.181-0.085-7.452-19.8440.411
151S_U612:A623_S0.053-0.0090.08-2.062-3.871-7.13
144S_U640:G630_S1.905-0.407-0.60410.191-7.4651.305

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.