1B60: Base Pair Morphology Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: 1B60 PDB ID: 1B60

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_DA4:DT8_B	0.219	-0.183	0.324	1.082	-13.57	-4.098
1	7	A_DA8:DT4_B	0.075	-0.178	0.253	0.5	-11.318	-2.886
1	1	A_DC1:DG11_B	0.627	-0.222	0.003	-0.166	0.027	-1.381
1	5	A_DC5:DG7_B	0.564	-0.21	0.229	-0.744	-10.49	-1.499
1	6	A_DC7:DG5_B	0.693	-0.251	0.217	-6.222	1.281	-1.295
1	10	A_DC11:DG1_B	0.669	-0.228	0.004	0.011	-0.008	-0.638
1	2	A_DG2:DC10_B	-0.723	-0.289	0.23	-3.542	-6.644	-1.323
1	9	A_DG10:DC2_B	-0.677	-0.271	0.439	11.65	-3.616	-2.416
1	3	A_DT3:DA9_B	-0.129	-0.183	0.392	-6.804	-11.68	-3.491
1	8	A_DT9:DA3_B	-0.227	-0.179	0.268	2.706	-12.405	-3.612

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.