A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID: 1B60  PDB ID: 1B60 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA4:DT8_B0.219-0.1830.3241.082-13.57-4.098
17A_DA8:DT4_B0.075-0.1780.2530.5-11.318-2.886
11A_DC1:DG11_B0.627-0.2220.003-0.1660.027-1.381
15A_DC5:DG7_B0.564-0.210.229-0.744-10.49-1.499
16A_DC7:DG5_B0.693-0.2510.217-6.2221.281-1.295
110A_DC11:DG1_B0.669-0.2280.0040.011-0.008-0.638
12A_DG2:DC10_B-0.723-0.2890.23-3.542-6.644-1.323
19A_DG10:DC2_B-0.677-0.2710.43911.65-3.616-2.416
13A_DT3:DA9_B-0.129-0.1830.392-6.804-11.68-3.491
18A_DT9:DA3_B-0.227-0.1790.2682.706-12.405-3.612

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.