1B60: Base Pair Morphology Step Parameters

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NDB ID: 1B60 PDB ID: 1B60

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_DA4DC5:DG7DT8_BB	0.214	-1.024	3.09	0.174	-1.007	38.569	-1.432	-0.303	3.115	-1.524	-0.264	38.582
1	7	AA_DA8DT9:DA3DT4_BB	-0.1	-0.912	3.01	-0.282	0.122	32.374	-1.655	0.133	3.007	0.218	0.507	32.376
1	1	AA_DC1DG2:DC10DG11_BB	-0.1	-1.751	3.171	-0.214	-2.179	30.732	-2.876	0.147	3.285	-4.105	0.403	30.808
1	5	AA_DC5DC7:DG5DG7_BB	-0.27	-0.739	6.238	6.108	20.472	70.892	-1.853	0.594	5.839	17.265	-5.151	73.636
1	6	AA_DC7DA8:DT4DG5_BB	-0.005	-0.942	2.655	1.3	8.95	36.983	-2.332	0.136	2.37	13.857	-2.013	38.035
1	2	AA_DG2DT3:DA9DC10_BB	-0.387	-1.036	3.173	-0.206	-2.921	39.349	-1.197	0.549	3.24	-4.331	0.306	39.454
1	9	AA_DG10DC11:DG1DC2_BB	0.518	-1.008	3.591	2.088	-8.709	46.241	-0.454	-0.455	3.73	-10.968	-2.63	47.053
1	3	AA_DT3DA4:DT8DA9_BB	0.179	-1.203	2.668	0.917	7.223	37.339	-2.567	-0.184	2.406	11.153	-1.415	38.017
1	8	AA_DT9DG10:DC2DA3_BB	0.41	-1.306	2.595	-1.539	7.167	34.035	-3.005	-0.862	2.261	12.072	2.592	34.792

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.