A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: PD0039  PDB ID: 1B96 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA2:DT11_D-1.238-0.742-0.887-20.762-15.02.1
12C_DA3:DT10_D-0.318-0.24-0.053-4.482-8.0162.334
14C_DA5:DT8_D0.122-0.210.2092.269-3.458-0.408
16C_DA7:DT6_D-0.09-0.2030.072-15.2194.4974.212
18C_DC9:DG4_D0.007-0.1690.106-7.87-12.0521.466
13C_DG4:DC9_D0.083-0.1690.58913.62-15.9972.877
15C_DT6:DA7_D-0.301-0.103-0.04512.8970.2754.854
17C_DT8:DA5_D0.014-0.1750.56-2.8191.806-3.109
19C_DT10:DA3_D0.108-0.2-0.1150.62-14.3723.919
110C_DT11:DA2_D0.65-0.501-0.2485.632-24.815.276

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.