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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
BDL001
PDB ID:
1BNA
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
5
A_DA5:DT20_B
0.272
-0.222
0.035
5.035
-16.362
1.835
1
6
A_DA6:DT19_B
-0.092
-0.042
0.166
3.544
-18.13
5.558
1
1
A_DC1:DG24_B
-0.422
-0.268
0.06
2.762
-14.2
-3.666
1
3
A_DC3:DG22_B
0.003
-0.248
0.213
-6.94
-3.928
-2.346
1
9
A_DC9:DG16_B
-0.019
-0.251
-0.06
-10.176
-17.254
-0.867
1
11
A_DC11:DG14_B
0.069
-0.284
0.586
-3.958
-18.046
-5.616
1
2
A_DG2:DC23_B
-0.024
-0.266
0.249
-4.455
-10.846
-4.022
1
4
A_DG4:DC21_B
-0.371
-0.442
-0.18
9.308
-10.394
-1.297
1
10
A_DG10:DC15_B
0.087
-0.278
0.272
1.665
-5.307
-1.129
1
12
A_DG12:DC13_B
-0.529
-0.109
0.261
6.598
1.957
-3.864
1
7
A_DT7:DA18_B
0.317
-0.117
0.133
0.829
-17.701
7.931
1
8
A_DT8:DA17_B
0.249
-0.215
-0.099
-1.329
-17.674
0.828
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.