1BNA: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311

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NDB ID: BDL001 PDB ID: 1BNA

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_DA5:DT20_B	0.272	-0.222	0.035	5.035	-16.362	1.835
1	6	A_DA6:DT19_B	-0.092	-0.042	0.166	3.544	-18.13	5.558
1	1	A_DC1:DG24_B	-0.422	-0.268	0.06	2.762	-14.2	-3.666
1	3	A_DC3:DG22_B	0.003	-0.248	0.213	-6.94	-3.928	-2.346
1	9	A_DC9:DG16_B	-0.019	-0.251	-0.06	-10.176	-17.254	-0.867
1	11	A_DC11:DG14_B	0.069	-0.284	0.586	-3.958	-18.046	-5.616
1	2	A_DG2:DC23_B	-0.024	-0.266	0.249	-4.455	-10.846	-4.022
1	4	A_DG4:DC21_B	-0.371	-0.442	-0.18	9.308	-10.394	-1.297
1	10	A_DG10:DC15_B	0.087	-0.278	0.272	1.665	-5.307	-1.129
1	12	A_DG12:DC13_B	-0.529	-0.109	0.261	6.598	1.957	-3.864
1	7	A_DT7:DA18_B	0.317	-0.117	0.133	0.829	-17.701	7.931
1	8	A_DT8:DA17_B	0.249	-0.215	-0.099	-1.329	-17.674	0.828

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.