A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: BDL001  PDB ID: 1BNA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DA5:DT20_B0.272-0.2220.0355.035-16.3621.835
16A_DA6:DT19_B-0.092-0.0420.1663.544-18.135.558
11A_DC1:DG24_B-0.422-0.2680.062.762-14.2-3.666
13A_DC3:DG22_B0.003-0.2480.213-6.94-3.928-2.346
19A_DC9:DG16_B-0.019-0.251-0.06-10.176-17.254-0.867
111A_DC11:DG14_B0.069-0.2840.586-3.958-18.046-5.616
12A_DG2:DC23_B-0.024-0.2660.249-4.455-10.846-4.022
14A_DG4:DC21_B-0.371-0.442-0.189.308-10.394-1.297
110A_DG10:DC15_B0.087-0.2780.2721.665-5.307-1.129
112A_DG12:DC13_B-0.529-0.1090.2616.5981.957-3.864
17A_DT7:DA18_B0.317-0.1170.1330.829-17.7017.931
18A_DT8:DA17_B0.249-0.215-0.099-1.329-17.6740.828

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.