A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
Search for released structures

NDB ID: PDE0139  PDB ID: 1BSS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA902:DT811_D-0.055-0.280.0052.469-20.49721.009
12C_DA903:DT810_D-0.143-0.3950.015-3.093-0.5940.582
14C_DA905:DT808_D0.244-0.0680.0421.397-8.643-1.44
16C_DA907:DT806_D0.289-0.114-0.157-1.508-3.1560.563
18C_DC909:DG804_D-0.0640.1840.264-6.45-9.3860.81
13C_DG904:DC809_D0.2740.011-0.0966.208-13.1762.493
15C_DT906:DA807_D-0.494-0.617-0.319-0.968-18.421-0.399
17C_DT908:DA805_D0.1270.0210.0845.773-8.6074.247
19C_DT910:DA803_D0.468-0.608-0.5775.149-4.0411.937
110C_DT911:DA802_D0.432-0.530.0795.783-6.8183.496

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.