1BSS: Base Pair Morphology Step Parameters

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NDB ID: PDE0139 PDB ID: 1BSS

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_DA902DA903:DT810DT811_DD	-0.448	1.024	3.679	-2.713	-4.209	40.501	1.986	0.31	3.581	-6.052	3.901	40.797
1	2	CC_DA903DG904:DC809DT810_DD	0.478	-0.263	3.342	0.851	3.777	31.407	-1.194	-0.715	3.3	6.943	-1.565	31.639
1	4	CC_DA905DT906:DA807DT808_DD	-0.266	-0.898	3.602	2.32	7.494	27.484	-3.631	1.1	3.217	15.38	-4.762	28.561
1	6	CC_DA907DT908:DA805DT806_DD	0.632	-1.072	3.246	0.487	6.083	32.086	-2.925	-1.043	3.007	10.882	-0.872	32.646
1	8	CC_DC909DT910:DA803DG804_DD	-0.308	-0.39	3.04	8.532	7.195	32.8	-1.663	1.712	2.734	12.305	-14.593	34.598
1	3	CC_DG904DA905:DT808DC809_DD	-0.632	-0.538	3.457	-4.681	-7.849	37.84	0.228	0.331	3.545	-11.892	7.093	38.889
1	5	CC_DT906DA907:DT806DA807_DD	0.201	-1.724	3.603	-2.137	32.092	20.35	-6.082	-0.538	0.504	58.371	3.888	37.916
1	7	CC_DT908DC909:DG804DA805_DD	0.415	-0.632	3.712	2.94	-6.179	37.602	-0.066	-0.206	3.786	-9.49	-4.515	38.197
1	9	CC_DT910DT911:DA802DA803_DD	-0.075	1.01	3.563	-4.716	1.552	31.049	1.545	-0.833	3.58	2.875	8.74	31.434

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.