A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search for released structures

NDB ID: 1BUB  PDB ID: 1BUB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DG1:DG15_A-1.808-3.1960.1389.74915.02388.576
13A_DG2:DG14_A2.1723.123-0.068-9.3163.678-85.954
12A_DG5:DG11_A-2.275-3.043-0.0896.526-8.66286.932
14A_DG6:DG10_A1.8963.236-0.09413.568-9.813-86.436
11A_DT4:DT13_A1.509-1.827-0.15418.763-30.81175.733

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.