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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID:
1BUB
PDB ID:
1BUB
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
3
AA_DG2DG6:DG10DG14_AA
-0.093
2.869
-1.756
-153.791
-77.455
-62.604
-1.644
0.365
0.117
39.57
-78.568
-173.332
1
2
AA_DG5DG2:DG14DG11_AA
-1.069
-3.563
-0.344
1.936
-1.088
179.72
-1.782
0.535
-0.344
-0.544
-0.968
179.72
1
4
AA_DG6DG1:DG15DG10_AA
1.822
3.137
0.038
16.072
-13.877
-179.931
-1.569
0.911
0.038
6.938
8.036
-179.933
1
1
AA_DT4DG5:DG11DT13_AA
-1.95
1.405
1.316
153.353
90.088
38.254
0.553
1.23
-0.484
45.409
-77.298
177.975
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.