A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 1BUB  PDB ID: 1BUB 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_DG2DG6:DG10DG14_AA-0.0932.869-1.756-153.791-77.455-62.604-1.6440.3650.11739.57-78.568-173.332
12AA_DG5DG2:DG14DG11_AA-1.069-3.563-0.3441.936-1.088179.72-1.7820.535-0.344-0.544-0.968179.72
14AA_DG6DG1:DG15DG10_AA1.8223.1370.03816.072-13.877-179.931-1.5690.9110.0386.9388.036-179.933
11AA_DT4DG5:DG11DT13_AA-1.951.4051.316153.35390.08838.2540.5531.23-0.48445.409-77.298177.975

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.