1BUB: Base Pair Morphology Step Parameters

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As of 4-Dec-2019 number of released structures: 10490

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NDB ID: 1BUB PDB ID: 1BUB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_DG2DG6:DG10DG14_AA	-0.093	2.869	-1.756	-153.791	-77.455	-62.604	-1.644	0.365	0.117	39.57	-78.568	-173.332
1	2	AA_DG5DG2:DG14DG11_AA	-1.069	-3.563	-0.344	1.936	-1.088	179.72	-1.782	0.535	-0.344	-0.544	-0.968	179.72
1	4	AA_DG6DG1:DG15DG10_AA	1.822	3.137	0.038	16.072	-13.877	-179.931	-1.569	0.911	0.038	6.938	8.036	-179.933
1	1	AA_DT4DG5:DG11DT13_AA	-1.95	1.405	1.316	153.353	90.088	38.254	0.553	1.23	-0.484	45.409	-77.298	177.975

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.