A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: PD0071  PDB ID: 1BY4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA1496:DT1544_F0.331-0.382-1.202-6.845-14.902-1.977
17E_DA1501:DT1539_F0.603-0.224-0.5657.073-28.653-0.475
18E_DA1502:DT1538_F0.054-0.038-0.092-3.373-21.411-2.069
19E_DA1503:DT1537_F-0.946-0.4-0.373-0.0043.869-10.898
114E_DA1508:DT1532_F-0.181-0.282-0.097-4.18-17.521-2.289
16E_DC1500:DG1540_F0.6610.122-0.90528.985-5.2916.33
113E_DC1507:DG1533_F0.027-0.060.0716.7367.2385.126
13E_DG1497:DC1543_F-0.116-0.472-0.0037.808-12.266-2.928
14E_DG1498:DC1542_F-0.581-0.237-0.131-15.799-14.0254.569
110E_DG1504:DC1536_F-0.666-0.236-0.208-8.039-10.5023.811
111E_DG1505:DC1535_F-0.3760.269-0.842-30.7-19.2234.617
115E_DG1509:DC1531_F-0.08-0.3620.006-20.142-19.1671.775
11E_DT1495:DA1545_F0.123-0.0230.849-22.244-12.7655.423
15E_DT1499:DA1541_F-0.009-0.2381.152-6.201-1.926-4.276
112E_DT1506:DA1534_F-0.9150.0980.75-4.7530.8040.624
117G_DA2496:DT2544_H0.667-0.9530.849-6.409-24.381-16.195
122G_DA2501:DT2539_H0.1910.023-0.58415.88-22.764-0.932
123G_DA2502:DT2538_H-0.0220.026-0.3783.799-19.0713.258
124G_DA2503:DT2537_H0.531-0.166-0.681-0.204-5.535-7.343
129G_DA2508:DT2532_H-0.380.1440.6535.154-24.6650.779
121G_DC2500:DG2540_H0.6340.0720.04921.403-14.3672.028
128G_DC2507:DG2533_H0.211-0.009-0.0815.1560.341-2.211
118G_DG2497:DC2543_H0.086-0.18-0.345-6.632-19.856-7.592
119G_DG2498:DC2542_H-0.414-0.0060.276-7.217-16.322.046
125G_DG2504:DC2536_H-0.389-0.155-0.324-14.282-11.1956.417
126G_DG2505:DC2535_H-0.0460.232-0.716-21.204-6.5320.983
130G_DG2509:DC2531_H0.130.029-0.595-23.161-22.0723.689
116G_DT2495:DA2545_H-0.3380.0410.526-12.53-0.374-4.58
120G_DT2499:DA2541_H0.1070.221-0.1696.674-8.7340.796
127G_DT2506:DA2534_H-0.292-0.437-0.16.545-7.6452.197

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.