A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 1BYJ  PDB ID: 1BYJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A9:U18_A0.5050.24-0.035-20.047-18.217-2.813
13A_C3:G25_A0.6710.067-0.53212.69-1.791-2.519
15A_C6:G22_A-0.711-0.2271.396-7.5126.0985.217
16A_C8:G19_A-0.3020.159-0.58712.579-31.5713.76
18A_C10:G17_A0.909-0.020.433-14.674-10.046-2.272
19A_C11:G16_A1.125-0.1460.296-2.457-9.954-2.877
11A_G1:C27_A-1.048-0.096-0.436-6.7550.139-2.791
12A_G2:C26_A-1.004-0.075-0.1895.8084.74-2.831
14A_G4:C24_A-1.014-0.165-0.961-13.415-13.487-0.3
110A_U12:G15_A0.432-5.9970.917-10.819-17.565-109.554

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.