A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search for released structures

NDB ID: 1BYJ  PDB ID: 1BYJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15AA_A9C10:G17U18_AA-0.272-0.9653.374-2.293-1.80631.316-1.4290.0543.433-3.3364.23731.448
13AA_C3G4:C24G25_AA0.051-1.5244.0881.77518.46730.617-5.5170.2082.75531.596-3.03835.684
14AA_C8A9:U18G19_AA-0.253-1.1794.261-2.12518.96438.723-3.9250.0853.36526.7182.99443.007
16AA_C10C11:G16G17_AA0.217-1.0993.152.1680.1930.711-2.107-0.0013.150.358-4.08730.786
17AA_C11U12:G15G16_AA0.338-0.8493.3212.1355.405106.407-0.602-0.1823.2933.373-1.332106.517
11AA_G1G2:C26C27_AA0.032-1.3973.247-2.8614.52730.3-3.487-0.5992.9968.5775.42130.759
12AA_G2C3:G25C26_AA0.047-1.53.4321.373.54333.703-3.1550.1453.2616.087-2.35433.91

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.