1C0A: Base Pair Morphology Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: PR0019 PDB ID: 1C0A

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	13	B_5MU654:A658_B	4.428	-2.339	0.354	-7.734	10.691	-101.947
1	3	B_A603:U670_B	-0.155	-0.193	-0.231	-7.137	-5.834	5.22
1	26	B_A614:4SU608_B	-4.102	-2.265	0.311	2.778	7.524	-99.106
1	18	B_A641:U629_B	0.355	0.098	0.019	0.457	2.246	6.877
1	5	B_C605:G668_B	0.186	-0.211	0.275	-2.218	-13.881	-0.013
1	25	B_C613:G622_B	0.576	-0.38	0.22	-1.997	-5.151	1.745
1	15	B_C638:C632_B	-4.161	-1.684	-0.065	13.178	-5.61	-0.38
1	17	B_C640:G630_B	0.351	-0.253	0.097	7.916	-0.449	5.001
1	9	B_C650:G664_B	0.169	-0.316	0.053	3.727	-13.355	2.985
1	1	B_G601:C672_B	-0.431	-0.207	-0.166	-1.824	2.796	-0.366
1	2	B_G602:C671_B	-0.393	-0.231	-0.271	-12.617	-13.209	4.892
1	4	B_G604:U669_B	-2.289	-0.62	0.351	-0.629	-10.842	1.297
1	6	B_G606:C667_B	-0.404	-0.377	-0.159	-7.449	-12.497	0.663
1	7	B_G607:C666_B	-0.133	-0.277	-0.102	-7.183	-5.937	-1.112
1	22	B_G610:U625_B	-2.581	-0.938	-0.104	-3.191	-16.867	-1.24
1	27	B_G615:C648_B	0.343	3.972	0.35	-2.155	5.589	156.709
1	28	B_G619:C656_B	-0.245	-0.02	0.136	-17.541	-13.217	1.277
1	16	B_G639:C631_B	-1.072	0.258	-0.011	7.474	-8.024	8.545
1	19	B_G642:C628_B	0.197	0.182	-0.254	-13.349	-9.561	6.403
1	20	B_G643:C627_B	-0.035	0.055	-0.086	-26.414	-18.564	2.102
1	21	B_G644:A626_B	-0.469	1.414	0.134	-25.389	-18.76	-21.785
1	8	B_G649:PSU665_B	-2.315	-0.582	0.077	1.968	-5.995	-3.569
1	10	B_G651:C663_B	-0.587	-0.166	-0.178	-5.438	-7.991	5.233
1	11	B_G652:C662_B	0.08	-0.242	-0.129	-7.219	-13.031	2.296
1	12	B_G653:C661_B	0.017	-0.089	-0.34	-16.609	-9.96	5.342
1	14	B_PSU655:G618_B	0.694	-5.464	0.136	12.811	15.239	-97.552
1	23	B_U611:A624_B	-0.131	-0.204	0.031	-7.003	-20.572	5.665
1	24	B_U612:A623_B	0.008	-0.182	0.053	-11.746	-12.157	0.275

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.