1C2Q: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 1C2Q PDB ID: 1C2Q

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_DA1:U18_B	0.056	-0.063	-0.338	-14.855	-12.112	-3.483
1	7	A_DC7:G12_B	0.405	-0.237	0.054	4.033	-16.1	0.535
1	9	A_DC9:G10_B	0.289	-0.173	-0.45	19.727	-22.747	0.677
1	3	A_DG3:C16_B	-0.426	-0.223	-0.03	-0.196	-15.757	0.62
1	4	A_DG4:C15_B	-0.463	-0.224	0.154	-3.473	-11.723	0.089
1	6	A_DG6:C13_B	-0.151	-0.146	0.243	4.801	-13.429	0.826
1	2	A_DT2:A17_B	0.084	-0.102	-0.34	12.981	-16.507	1.104
1	8	A_DT8:A11_B	-0.026	0.018	-0.258	15.181	-9.147	-1.579
1	5	A_T3P5:A14_B	0.055	-0.116	-0.043	9.001	-10.114	-2.179

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.