A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PDT034  PDB ID: 1CDW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_DA6:DT111_C0.048-0.02-0.222-38.39814.8812.446
18B_DA8:DT109_C0.226-0.189-0.276-1.474-0.9722.398
19B_DA9:DT108_C0.012-0.1010.06918.209-1.4517.371
110B_DA10:DT107_C0.121-0.2020.0524.72-12.3973.94
111B_DA11:DT106_C0.030.0950.24734.787-17.2438.569
11B_DC1:DG116_C0.093-0.3750.259-13.452-16.4531.498
14B_DC4:DG113_C0.427-0.3850.2332.283-16.7412.617
114B_DC14:DG103_C-0.166-0.3230.218-4.896-14.548-2.623
13B_DG3:DC114_C-0.051-0.2370.2988.485-12.640.646
112B_DG12:DC105_C-0.357-0.272-0.0168.9943.6271.467
113B_DG13:DC104_C-0.087-0.364-0.0639.765-4.096-3.915
116B_DG16:DC101_C0.68-0.5530.6022.828-17.967-6.594
12B_DT2:DA115_C-0.013-0.1960.024-2.564-8.7280.492
15B_DT5:DA112_C-0.113-0.20.035-4.513-10.1437.918
17B_DT7:DA110_C-0.091-0.0420.195-29.203-7.5295.446
115B_DT15:DA102_C-0.391-0.3080.076-1.361-7.59-5.304

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.