A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: PD0054  PDB ID: 1CL8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15B_DA6:DT9_B0.256-0.013-0.041.062-4.243-3.18
11B_DC2:DG13_B0.050.0290.439-26.8790.9833.08
13B_DC4:DG11_B0.1930.039-0.197-0.201-3.25-5.502
19B_DC10:DG5_B0.323-0.137-0.66515.627-2.966-1.865
111B_DC12:DG3_B0.17-0.0970.1594.079-1.3760.11
12B_DG3:DC12_B-0.17-0.0970.159-4.079-1.3760.11
14B_DG5:DC10_B-0.323-0.137-0.665-15.627-2.966-1.865
110B_DG11:DC4_B-0.1930.039-0.1970.201-3.25-5.502
112B_DG13:DC2_B-0.050.0290.43926.8790.9833.08
17B_DT8:PRN7_B-0.2260.1280.521-4.0630.3513.057
18B_DT9:DA6_B-0.256-0.013-0.04-1.062-4.243-3.18
16B_PRN7:DT8_B0.2260.1280.5214.0640.3513.057

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.