1CYQ: Base Pair Morphology Parameters

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NDB ID: PD0096 PDB ID: 1CYQ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	C_DA404:DT519_D	0.075	0.022	-0.027	6.828	-3.18	-2.848
1	11	C_DA412:DT511_D	0.131	-0.076	-0.055	7.465	-13.275	2.8
1	12	C_DA413:DT510_D	0.081	0.041	0.086	2.427	-15.0	-0.176
1	14	C_DA415:DT508_D	0.172	-0.024	-0.518	-22.764	1.688	3.052
1	16	C_DA417:DT506_D	-0.028	-0.14	-0.072	2.275	-9.728	2.426
1	20	C_DA421:DT502_D	0.157	-0.036	-0.106	-3.137	-8.422	4.962
1	4	C_DC405:DG518_D	0.298	-0.021	-0.085	5.582	-14.544	0.586
1	6	C_DC407:DG516_D	0.505	-0.153	-0.35	2.173	-0.096	1.461
1	8	C_DC409:DG514_D	0.348	-0.038	-0.081	8.135	-5.908	1.531
1	19	C_DC420:DG503_D	0.485	-0.09	0.113	-4.298	-2.576	4.036
1	2	C_DG403:DC520_D	-0.335	-0.019	-0.273	-4.956	-5.401	1.914
1	13	C_DG414:DC509_D	-0.237	-0.026	-0.177	-9.531	-7.146	-0.189
1	15	C_DG416:DC507_D	-0.287	-0.204	0.072	-3.618	-6.796	3.231
1	17	C_DG418:DC505_D	-0.336	-0.067	-0.012	-4.4	-14.513	2.095
1	1	C_DT402:DA521_D	0.011	0.043	-0.115	-13.125	-8.783	5.812
1	5	C_DT406:DA517_D	-0.068	-0.133	-0.054	-1.875	-8.085	3.187
1	7	C_DT408:DA515_D	-0.324	0.02	-0.72	26.377	1.504	2.815
1	9	C_DT410:DA513_D	-0.259	-0.028	-0.068	-0.393	-15.149	0.994
1	10	C_DT411:DA512_D	-0.234	-0.094	-0.133	-5.996	-8.555	3.224
1	18	C_DT419:DA504_D	-0.047	-0.073	0.09	-10.418	-6.18	1.202

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.