A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: PD0096  PDB ID: 1CYQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA404:DT519_D0.0750.022-0.0276.828-3.18-2.848
111C_DA412:DT511_D0.131-0.076-0.0557.465-13.2752.8
112C_DA413:DT510_D0.0810.0410.0862.427-15.0-0.176
114C_DA415:DT508_D0.172-0.024-0.518-22.7641.6883.052
116C_DA417:DT506_D-0.028-0.14-0.0722.275-9.7282.426
120C_DA421:DT502_D0.157-0.036-0.106-3.137-8.4224.962
14C_DC405:DG518_D0.298-0.021-0.0855.582-14.5440.586
16C_DC407:DG516_D0.505-0.153-0.352.173-0.0961.461
18C_DC409:DG514_D0.348-0.038-0.0818.135-5.9081.531
119C_DC420:DG503_D0.485-0.090.113-4.298-2.5764.036
12C_DG403:DC520_D-0.335-0.019-0.273-4.956-5.4011.914
113C_DG414:DC509_D-0.237-0.026-0.177-9.531-7.146-0.189
115C_DG416:DC507_D-0.287-0.2040.072-3.618-6.7963.231
117C_DG418:DC505_D-0.336-0.067-0.012-4.4-14.5132.095
11C_DT402:DA521_D0.0110.043-0.115-13.125-8.7835.812
15C_DT406:DA517_D-0.068-0.133-0.054-1.875-8.0853.187
17C_DT408:DA515_D-0.3240.02-0.7226.3771.5042.815
19C_DT410:DA513_D-0.259-0.028-0.068-0.393-15.1490.994
110C_DT411:DA512_D-0.234-0.094-0.133-5.996-8.5553.224
118C_DT419:DA504_D-0.047-0.0730.09-10.418-6.181.202

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.