1CYQ: Base Pair Morphology Step Parameters

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NDB ID: PD0096 PDB ID: 1CYQ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	CC_DA404DC405:DG518DT519_DD	1.006	-0.77	3.444	1.335	-3.464	31.007	-0.726	-1.597	3.546	-6.451	-2.485	31.223
1	11	CC_DA412DA413:DT510DT511_DD	-0.288	0.032	3.295	-2.648	2.815	37.707	-0.315	0.1	3.301	4.342	4.084	37.898
1	12	CC_DA413DG414:DC509DT510_DD	1.401	-2.22	3.644	6.062	3.907	25.42	-6.019	-1.267	3.504	8.66	-13.436	26.407
1	14	CC_DA415DG416:DC507DT508_DD	-0.283	-1.294	3.149	-0.436	-4.173	29.298	-1.658	0.462	3.301	-8.198	0.857	29.591
1	16	CC_DA417DG418:DC505DT506_DD	-0.27	-1.192	3.473	-3.336	3.325	37.608	-2.283	-0.033	3.37	5.133	5.15	37.891
1	4	CC_DC405DT406:DA517DG518_DD	0.756	-1.279	3.504	3.493	1.898	37.124	-2.268	-0.687	3.491	2.971	-5.467	37.329
1	6	CC_DC407DT408:DA515DG516_DD	0.36	-1.072	2.976	-0.018	4.749	26.594	-3.361	-0.776	2.746	10.219	0.039	27.007
1	8	CC_DC409DT410:DA513DG514_DD	-1.501	-2.305	3.58	-3.814	3.183	23.818	-6.557	2.262	3.441	7.607	9.114	24.323
1	19	CC_DC420DA421:DT502DG503_DD	0.05	-0.723	3.299	4.34	4.234	31.586	-2.061	0.684	3.157	7.689	-7.882	32.148
1	2	CC_DG403DA404:DT519DC520_DD	-0.316	0.048	3.141	-2.378	5.699	28.407	-1.115	0.125	3.107	11.442	4.775	29.057
1	13	CC_DG414DA415:DT508DC509_DD	0.956	-2.356	3.823	10.64	0.682	30.841	-4.342	0.541	3.88	1.237	-19.298	32.59
1	15	CC_DG416DA417:DT506DC507_DD	0.45	-1.383	3.26	4.087	7.857	25.909	-4.771	0.008	2.767	16.906	-8.794	27.357
1	17	CC_DG418DT419:DA504DC505_DD	-0.891	-0.852	3.527	-1.714	-4.512	33.202	-0.661	1.233	3.648	-7.844	2.98	33.542
1	1	CC_DT402DG403:DC520DA521_DD	-0.476	0.555	3.241	-0.553	9.164	28.52	-0.859	0.804	3.267	18.021	1.088	29.932
1	5	CC_DT406DC407:DG516DA517_DD	-0.06	-1.231	3.332	3.536	6.373	28.598	-3.747	0.854	2.965	12.644	-7.015	29.494
1	7	CC_DT408DC409:DG514DA515_DD	-0.668	-2.441	3.987	-12.263	2.801	31.188	-4.791	-1.315	3.75	4.965	21.733	33.571
1	9	CC_DT410DT411:DA512DA513_DD	0.245	0.071	3.319	2.135	5.648	37.206	-0.636	-0.098	3.302	8.782	-3.319	37.676
1	10	CC_DT411DA412:DT511DA512_DD	0.005	1.405	3.093	-0.569	12.053	26.233	0.021	-0.143	3.396	24.945	1.177	28.831
1	18	CC_DT419DC420:DG503DA504_DD	0.219	-0.453	3.248	-2.389	1.114	31.35	-1.041	-0.846	3.205	2.056	4.412	31.458

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.