A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
Search for released structures

NDB ID: PD0096  PDB ID: 1CYQ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13CC_DA404DC405:DG518DT519_DD1.006-0.773.4441.335-3.46431.007-0.726-1.5973.546-6.451-2.48531.223
111CC_DA412DA413:DT510DT511_DD-0.2880.0323.295-2.6482.81537.707-0.3150.13.3014.3424.08437.898
112CC_DA413DG414:DC509DT510_DD1.401-2.223.6446.0623.90725.42-6.019-1.2673.5048.66-13.43626.407
114CC_DA415DG416:DC507DT508_DD-0.283-1.2943.149-0.436-4.17329.298-1.6580.4623.301-8.1980.85729.591
116CC_DA417DG418:DC505DT506_DD-0.27-1.1923.473-3.3363.32537.608-2.283-0.0333.375.1335.1537.891
14CC_DC405DT406:DA517DG518_DD0.756-1.2793.5043.4931.89837.124-2.268-0.6873.4912.971-5.46737.329
16CC_DC407DT408:DA515DG516_DD0.36-1.0722.976-0.0184.74926.594-3.361-0.7762.74610.2190.03927.007
18CC_DC409DT410:DA513DG514_DD-1.501-2.3053.58-3.8143.18323.818-6.5572.2623.4417.6079.11424.323
119CC_DC420DA421:DT502DG503_DD0.05-0.7233.2994.344.23431.586-2.0610.6843.1577.689-7.88232.148
12CC_DG403DA404:DT519DC520_DD-0.3160.0483.141-2.3785.69928.407-1.1150.1253.10711.4424.77529.057
113CC_DG414DA415:DT508DC509_DD0.956-2.3563.82310.640.68230.841-4.3420.5413.881.237-19.29832.59
115CC_DG416DA417:DT506DC507_DD0.45-1.3833.264.0877.85725.909-4.7710.0082.76716.906-8.79427.357
117CC_DG418DT419:DA504DC505_DD-0.891-0.8523.527-1.714-4.51233.202-0.6611.2333.648-7.8442.9833.542
11CC_DT402DG403:DC520DA521_DD-0.4760.5553.241-0.5539.16428.52-0.8590.8043.26718.0211.08829.932
15CC_DT406DC407:DG516DA517_DD-0.06-1.2313.3323.5366.37328.598-3.7470.8542.96512.644-7.01529.494
17CC_DT408DC409:DG514DA515_DD-0.668-2.4413.987-12.2632.80131.188-4.791-1.3153.754.96521.73333.571
19CC_DT410DT411:DA512DA513_DD0.2450.0713.3192.1355.64837.206-0.636-0.0983.3028.782-3.31937.676
110CC_DT411DA412:DT511DA512_DD0.0051.4053.093-0.56912.05326.2330.021-0.1433.39624.9451.17728.831
118CC_DT419DC420:DG503DA504_DD0.219-0.4533.248-2.3891.11431.35-1.041-0.8463.2052.0564.41231.458

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.