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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID:
DDF029
PDB ID:
1D38
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
A_DA3:DT4_A
-0.113
-0.221
0.325
-7.36
-2.238
1.049
1
1
A_DC1:DG6_A
0.228
-0.263
-0.296
13.601
4.354
0.089
1
5
A_DC5:DG2_A
0.11
-0.161
-0.314
16.501
0.809
0.013
1
2
A_DG2:DC5_A
-0.11
-0.161
-0.314
-16.501
0.809
0.013
1
6
A_DG6:DC1_A
-0.228
-0.263
-0.296
-13.601
4.354
0.089
1
4
A_DT4:DA3_A
0.113
-0.221
0.325
7.36
-2.238
1.049
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.