A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: DDF029  PDB ID: 1D38 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_DA3:DT4_A-0.113-0.2210.325-7.36-2.2381.049
11A_DC1:DG6_A0.228-0.263-0.29613.6014.3540.089
15A_DC5:DG2_A0.11-0.161-0.31416.5010.8090.013
12A_DG2:DC5_A-0.11-0.161-0.314-16.5010.8090.013
16A_DG6:DC1_A-0.228-0.263-0.296-13.6014.3540.089
14A_DT4:DA3_A0.113-0.2210.3257.36-2.2381.049

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.