1D38: Base Pair Morphology Parameters

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NDB ID: DDF029 PDB ID: 1D38

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_DA3:DT4_A	-0.113	-0.221	0.325	-7.36	-2.238	1.049
1	1	A_DC1:DG6_A	0.228	-0.263	-0.296	13.601	4.354	0.089
1	5	A_DC5:DG2_A	0.11	-0.161	-0.314	16.501	0.809	0.013
1	2	A_DG2:DC5_A	-0.11	-0.161	-0.314	-16.501	0.809	0.013
1	6	A_DG6:DC1_A	-0.228	-0.263	-0.296	-13.601	4.354	0.089
1	4	A_DT4:DA3_A	0.113	-0.221	0.325	7.36	-2.238	1.049

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.