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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID:
DDF029
PDB ID:
1D38
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
3
AA_DA3DT4:DA3DT4_AA
0.0
-0.748
3.164
0.0
0.763
31.967
-1.492
0.0
3.146
1.385
0.0
31.976
1
1
AA_DC1DG2:DC5DG6_AA
1.309
1.085
7.206
-0.018
-0.729
33.934
2.116
-2.248
7.181
-1.249
0.03
33.942
1
5
AA_DC5DG6:DC1DG2_AA
-1.309
1.085
7.206
0.018
-0.729
33.934
2.116
2.248
7.181
-1.249
-0.03
33.942
1
2
AA_DG2DA3:DT4DC5_AA
-1.382
0.436
3.258
-7.123
-0.283
31.718
0.832
1.17
3.475
-0.51
12.831
32.489
1
4
AA_DT4DC5:DG2DA3_AA
1.382
0.436
3.258
7.123
-0.283
31.718
0.832
-1.17
3.475
-0.51
-12.831
32.489
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.
