A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
Search for released structures

NDB ID: GDL012  PDB ID: 1D45 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DA5:DT20_B0.245-0.2930.05411.52-17.3411.382
16A_DA6:DT19_B-0.298-0.016-0.171.603-21.5458.491
11A_DC1:DG24_B0.109-0.1690.071-2.981-15.2-6.362
13A_DC3:DG22_B0.242-0.3280.525-2.01-7.389-1.193
19A_DC9:DG16_B0.6780.1280.008-5.737-8.542.607
111A_DC11:DG14_B0.084-0.2510.6722.977-21.859-5.649
12A_DG2:DC23_B-0.005-0.1830.4558.19-3.825-1.741
14A_DG4:DC21_B-0.182-0.209-0.00914.243-14.845-7.461
110A_DG10:DC15_B0.03-0.397-0.0498.8153.303-4.082
112A_DG12:DC13_B-0.579-0.302-0.0982.59421.027-3.636
17A_DT7:DA18_B0.132-0.012-0.136-2.545-20.2955.405
18A_DT8:DA17_B-0.507-0.302-0.015-12.766-11.8870.194

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.