A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: PDT003  PDB ID: 1D66 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17D_DA8:DT31_E0.601-0.3650.5739.129-17.0062.161
19D_DA10:DT29_E0.645-0.490.698-1.058-14.28-12.613
11D_DC1:DG38_E0.41-0.5321.005-6.13-8.411-1.535
12D_DC2:DG37_E0.772-0.3660.232.04-5.2-0.723
18D_DC9:DG30_E0.806-0.606-0.1436.322-9.214-7.278
112D_DC13:DG26_E1.114-0.530.257-12.864-8.637-4.443
113D_DC14:DG25_E1.203-0.2320.011-0.784-6.575-32.605
115D_DC16:DG23_E-0.2140.154-0.216-3.769-1.0529.058
116D_DC17:DG22_E0.142-0.551-0.0993.182-7.25-5.336
13D_DG3:DC36_E0.108-0.4630.1958.405-19.302-8.958
14D_DG4:DC35_E-0.461-0.306-0.0883.563-4.72-1.201
15D_DG6:DC33_E0.209-0.3330.361-1.192-9.7860.327
16D_DG7:DC32_E-0.311-0.514-0.3723.954-11.562-5.337
110D_DG11:DC28_E0.1014.9010.456-4.734-10.108-87.026
117D_DG18:DC21_E-0.976-0.1870.6992.01-1.9355.254
118D_DG19:DC20_E1.092-0.275-0.0035.651-4.062-5.809
111D_DT12:DA27_E0.19-0.1670.253-7.858-15.0161.67
114D_DT15:DA24_E0.7-0.2710.246-3.786-13.762-1.016

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.