A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: AHJ015  PDB ID: 1D96 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_C2:DG19_B0.341-0.2550.1963.773-11.7842.812
15A_DA5:DT16_B-0.073-0.0530.1630.738-14.9084.612
17A_DA7:DT14_B-0.469-0.2480.0693.717-11.7046.368
18A_DC8:G13_B0.31-0.3380.3296.935-11.3041.923
110A_DC10:G11_B-0.112-0.325-0.0070.671-2.953-4.879
19A_DG9:C12_B-0.206-0.280.2822.385-14.8-4.107
14A_DT4:DA17_B-0.027-0.0680.0794.201-9.837-3.86
16A_DT6:DA15_B-0.396-0.1540.0186.455-11.69711.435
11A_G1:DC20_B-0.145-0.0780.084.597-8.483-4.871
13A_G3:DC18_B-0.0770.0140.007-9.215-15.14.674

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.