A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: AHJ015  PDB ID: 1D96 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12AA_C2G3:DC18DG19_BB-0.443-1.7693.5471.7399.17528.551-5.3041.2132.82418.005-3.41430.009
15AA_DA5DT6:DA15DT16_BB0.689-1.5213.1480.3257.9929.812-4.268-1.2382.66715.189-0.61730.842
17AA_DA7DC8:G13DT14_BB-0.445-1.4573.326-5.02.28735.261-2.713-0.0073.2593.7468.19235.674
18AA_DC8DG9:C12G13_BB-0.524-1.5453.2111.99411.28930.406-4.5421.2512.45820.625-3.64332.447
19AA_DG9DC10:G11C12_BB0.375-1.343.5893.1992.91134.86-2.693-0.1013.4894.836-5.31435.119
14AA_DT4DA5:DT16DA17_BB0.159-1.2283.3070.3818.74727.834-4.938-0.2192.09134.462-0.69833.457
16AA_DT6DA7:DT14DA15_BB-0.213-1.1063.204-1.51315.22526.273-4.8630.1352.24830.4333.02530.336
11AA_G1C2:DG19DC20_BB0.726-1.7953.4150.6132.27839.922-2.894-0.9893.3233.332-0.89739.989
13AA_G3DT4:DA17DC18_BB-0.566-1.2312.957-1.1596.16931.172-3.2320.8482.68911.3362.1331.782

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.