A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PD0093  PDB ID: 1DE8 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
14X_DA4:DT19_Y00
17X_DA8:DT15_Y120
12X_DC2:DG21_Y119
15X_DC5:DG18_Y00
19X_DC10:DG13_Y119
11X_DG1:DC22_Y10
16X_DG7:DC16_Y119
110X_DG11:DC12_Y119
13X_DT3:DA20_Y00
18X_DT9:DA14_Y00
114U_DA34:DT49_V120
117U_DA38:DT45_V120
112U_DC32:DG51_V119
115U_DC35:DG48_V10
119U_DC40:DG43_V119
111U_DG31:DC52_V119
116U_DG37:DC46_V119
120U_DG41:DC42_V119
113U_DT33:DA50_V120
118U_DT39:DA44_V120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)