A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PD0093  PDB ID: 1DE8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14X_DA4:DT19_Y-0.3890.4030.0847.833-2.435.458
17X_DA8:DT15_Y-0.911-0.0850.5933.227-6.1913.015
12X_DC2:DG21_Y0.32-0.054-0.014.897-6.781-5.402
15X_DC5:DG18_Y1.2980.9790.033-3.689-2.86119.681
19X_DC10:DG13_Y0.985-0.196-0.1440.093-9.1856.137
11X_DG1:DC22_Y-0.0040.28-0.932-1.6999.5751.935
16X_DG7:DC16_Y0.925-0.5130.055-1.054-3.538-3.849
110X_DG11:DC12_Y0.543-0.3850.386-7.694-22.149-6.756
13X_DT3:DA20_Y0.1520.5950.276-6.796-2.3812.616
18X_DT9:DA14_Y-0.980.344-0.1131.761-14.4817.488
114U_DA34:DT49_V1.339-0.304-0.42.36-6.93-3.84
117U_DA38:DT45_V-0.522-0.5841.7817.8187.837-1.859
112U_DC32:DG51_V-0.66-0.081-0.6244.483-4.968-0.7
115U_DC35:DG48_V0.5020.277-0.362-0.692-6.11716.289
119U_DC40:DG43_V0.2970.0380.95-19.3565.5045.031
111U_DG31:DC52_V-0.0840.046-0.03710.3680.295-4.852
116U_DG37:DC46_V0.1140.2320.1912.213-8.3920.255
120U_DG41:DC42_V0.746-0.5510.024-5.087-22.683-0.109
113U_DT33:DA50_V0.4690.025-0.245.967-3.1930.053
118U_DT39:DA44_V-0.38-0.1861.523-14.5360.5310.291

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.