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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0093
PDB ID:
1DE8
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
X_DA4:DT19_Y
-0.389
0.403
0.084
7.833
-2.43
5.458
1
7
X_DA8:DT15_Y
-0.911
-0.085
0.593
3.227
-6.191
3.015
1
2
X_DC2:DG21_Y
0.32
-0.054
-0.01
4.897
-6.781
-5.402
1
5
X_DC5:DG18_Y
1.298
0.979
0.033
-3.689
-2.861
19.681
1
9
X_DC10:DG13_Y
0.985
-0.196
-0.144
0.093
-9.185
6.137
1
1
X_DG1:DC22_Y
-0.004
0.28
-0.932
-1.699
9.575
1.935
1
6
X_DG7:DC16_Y
0.925
-0.513
0.055
-1.054
-3.538
-3.849
1
10
X_DG11:DC12_Y
0.543
-0.385
0.386
-7.694
-22.149
-6.756
1
3
X_DT3:DA20_Y
0.152
0.595
0.276
-6.796
-2.38
12.616
1
8
X_DT9:DA14_Y
-0.98
0.344
-0.113
1.761
-14.481
7.488
1
14
U_DA34:DT49_V
1.339
-0.304
-0.4
2.36
-6.93
-3.84
1
17
U_DA38:DT45_V
-0.522
-0.584
1.781
7.818
7.837
-1.859
1
12
U_DC32:DG51_V
-0.66
-0.081
-0.624
4.483
-4.968
-0.7
1
15
U_DC35:DG48_V
0.502
0.277
-0.362
-0.692
-6.117
16.289
1
19
U_DC40:DG43_V
0.297
0.038
0.95
-19.356
5.504
5.031
1
11
U_DG31:DC52_V
-0.084
0.046
-0.037
10.368
0.295
-4.852
1
16
U_DG37:DC46_V
0.114
0.232
0.191
2.213
-8.392
0.255
1
20
U_DG41:DC42_V
0.746
-0.551
0.024
-5.087
-22.683
-0.109
1
13
U_DT33:DA50_V
0.469
0.025
-0.24
5.967
-3.193
0.053
1
18
U_DT39:DA44_V
-0.38
-0.186
1.523
-14.536
0.53
10.291
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.