1DE8: Base Pair Morphology Step Parameters

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NDB ID: PD0093 PDB ID: 1DE8

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	XX_DA4DC5:DG18DT19_YY	-0.015	-0.047	3.524	-0.022	7.543	43.528	-0.824	0.018	3.469	10.081	0.029	44.146
1	6	XX_DA8DT9:DA14DT15_YY	0.234	-0.904	3.435	4.078	11.279	27.647	-4.062	0.389	2.861	22.32	-8.07	30.09
1	2	XX_DC2DT3:DA20DG21_YY	0.571	-0.385	3.557	3.275	11.862	33.955	-2.437	-0.421	3.284	19.533	-5.393	36.054
1	8	XX_DC10DG11:DC12DG13_YY	-0.856	0.452	3.528	-2.73	3.813	36.206	0.144	0.954	3.608	6.104	4.37	36.498
1	1	XX_DG1DC2:DG21DC22_YY	-0.406	-0.405	3.429	-7.52	-12.633	35.841	1.077	-0.391	3.393	-19.546	11.634	38.647
1	5	XX_DG7DA8:DT15DC16_YY	0.234	1.558	3.093	-2.733	-11.302	33.807	3.965	-0.726	2.438	-18.759	4.536	35.695
1	3	XX_DT3DA4:DT19DA20_YY	0.114	1.007	2.857	2.292	4.012	29.925	1.202	0.196	2.964	7.712	-4.406	30.272
1	7	XX_DT9DC10:DG13DA14_YY	1.019	0.875	3.556	4.329	-2.652	43.942	1.433	-0.912	3.58	-3.53	-5.762	44.22
1	12	UU_DA34DC35:DG48DT49_VV	0.32	-0.909	2.898	0.317	5.944	31.652	-2.553	-0.529	2.69	10.778	-0.576	32.193
1	14	UU_DA38DT39:DA44DT45_VV	0.531	-0.969	4.156	2.108	3.121	35.348	-2.162	-0.481	4.082	5.121	-3.459	35.541
1	10	UU_DC32DT33:DA50DG51_VV	-0.393	0.132	3.287	-0.305	13.098	40.2	-1.183	0.514	3.18	18.471	0.43	42.197
1	16	UU_DC40DG41:DC42DG43_VV	-1.018	1.074	2.943	2.258	-5.754	43.697	1.901	1.541	2.734	-7.684	-3.015	44.111
1	9	UU_DG31DC32:DG51DC52_VV	0.79	-0.431	3.246	4.61	2.892	31.765	-1.295	-0.599	3.274	5.236	-8.345	32.216
1	13	UU_DG37DA38:DT45DC46_VV	0.16	1.805	3.158	-8.726	-17.159	40.843	3.694	-0.888	2.192	-23.105	11.75	44.976
1	11	UU_DT33DA34:DT49DA50_VV	-0.013	1.078	3.899	0.213	7.715	40.198	0.509	0.047	4.03	11.102	-0.306	40.902
1	15	UU_DT39DC40:DG43DA44_VV	0.96	0.972	3.625	7.992	0.844	39.382	1.305	-0.361	3.76	1.237	-11.712	40.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.