A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD0093  PDB ID: 1DE8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14XX_DA4DC5:DG18DT19_YY-0.015-0.0473.524-0.0227.54343.528-0.8240.0183.46910.0810.02944.146
16XX_DA8DT9:DA14DT15_YY0.234-0.9043.4354.07811.27927.647-4.0620.3892.86122.32-8.0730.09
12XX_DC2DT3:DA20DG21_YY0.571-0.3853.5573.27511.86233.955-2.437-0.4213.28419.533-5.39336.054
18XX_DC10DG11:DC12DG13_YY-0.8560.4523.528-2.733.81336.2060.1440.9543.6086.1044.3736.498
11XX_DG1DC2:DG21DC22_YY-0.406-0.4053.429-7.52-12.63335.8411.077-0.3913.393-19.54611.63438.647
15XX_DG7DA8:DT15DC16_YY0.2341.5583.093-2.733-11.30233.8073.965-0.7262.438-18.7594.53635.695
13XX_DT3DA4:DT19DA20_YY0.1141.0072.8572.2924.01229.9251.2020.1962.9647.712-4.40630.272
17XX_DT9DC10:DG13DA14_YY1.0190.8753.5564.329-2.65243.9421.433-0.9123.58-3.53-5.76244.22
112UU_DA34DC35:DG48DT49_VV0.32-0.9092.8980.3175.94431.652-2.553-0.5292.6910.778-0.57632.193
114UU_DA38DT39:DA44DT45_VV0.531-0.9694.1562.1083.12135.348-2.162-0.4814.0825.121-3.45935.541
110UU_DC32DT33:DA50DG51_VV-0.3930.1323.287-0.30513.09840.2-1.1830.5143.1818.4710.4342.197
116UU_DC40DG41:DC42DG43_VV-1.0181.0742.9432.258-5.75443.6971.9011.5412.734-7.684-3.01544.111
19UU_DG31DC32:DG51DC52_VV0.79-0.4313.2464.612.89231.765-1.295-0.5993.2745.236-8.34532.216
113UU_DG37DA38:DT45DC46_VV0.161.8053.158-8.726-17.15940.8433.694-0.8882.192-23.10511.7544.976
111UU_DT33DA34:DT49DA50_VV-0.0131.0783.8990.2137.71540.1980.5090.0474.0311.102-0.30640.902
115UU_DT39DC40:DG43DA44_VV0.960.9723.6257.9920.84439.3821.305-0.3613.761.237-11.71240.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.