A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
Search for released structures

NDB ID: PD0102  PDB ID: 1DH3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19B_DA-2:DT2_D1.379-0.5580.99310.6493.367-5.044
114B_DA4:DT-4_D0.031-0.3440.422-3.835-3.31510.218
118B_DA8:DT-8_D0.168-0.1450.649-5.112-10.04-25.226
119B_DA9:DT-9_D-0.555-0.153-0.592-21.107-5.255-24.702
11B_DC-10:DG10_D-0.513-0.730.422-8.1193.989-2.992
16B_DC-5:DG5_D-0.877-0.3160.108-9.56-6.799-0.605
110B_DC-1:DG1_D-0.097-0.5390.3834.526-6.362-4.122
113B_DC3:DG-3_D-0.307-0.0091.023-18.197-2.8720.912
116B_DC6:DG-6_D-0.169-0.5290.068-1.27-1.3560.488
117B_DC7:DG-7_D-2.7420.501-0.222-9.455.47624.419
14B_DG-7:DC7_D-0.227-0.3710.4082.851-2.288-4.91
15B_DG-6:DC6_D-0.956-0.6890.187-3.084-8.669-2.967
18B_DG-3:DC3_D0.449-0.3860.292.15-15.523-4.445
111B_DG1:DC-1_D0.345-0.4571.00118.901-3.653-12.481
115B_DG5:DC-5_D0.553-0.5470.6322.8229.814-8.21
120B_DG10:DC-10_D1.53-0.4050.475-28.6431.901-9.603
12B_DT-9:DA9_D-0.875-0.5450.605-5.268-16.322-12.779
13B_DT-8:DA8_D-0.049-0.4860.923-3.578-5.5251.494
17B_DT-4:DA4_D0.167-0.3060.0758.888-4.637-6.71
112B_DT2:DA-2_D-0.106-0.0660.948-6.504-11.098-10.54

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.