A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: PD0102  PDB ID: 1DH3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19BB_DA-2DC-1:DG1DT2_DD0.243-1.2143.4656.994-1.48226.263-2.1811.3783.474-3.186-15.04127.202
114BB_DA4DG5:DC-5DT-4_DD-0.769-0.0433.155-1.799-4.14831.3110.6681.0873.172-7.6363.31231.628
118BB_DA8DA9:DT-9DT-8_DD-0.523-0.3263.7869.8943.16124.786-1.6183.9923.2736.986-21.86526.843
119BB_DA9DG10:DC-10DT-9_DD-0.3250.1043.477-12.379-3.3347.390.397-0.6163.44-4.05715.08148.996
11BB_DC-10DT-9:DA9DG10_DD-0.518-0.7213.3512.199-2.32333.158-0.861.283.352-4.059-3.84233.308
16BB_DC-5DT-4:DA4DG5_DD-0.0060.1243.166-5.349-0.36935.7020.251-0.7233.132-0.5988.66536.09
110BB_DC-1DG1:DC-1DG1_DD0.0780.0283.02-1.2726.71538.261-0.713-0.2612.97910.1461.92238.844
113BB_DC3DA4:DT-4DG-3_DD0.389-0.112.6425.3152.52340.51-0.383-0.0832.6593.62-7.62840.917
116BB_DC6DC7:DG-7DG-6_DD0.629-0.1193.531-1.814-1.2316.4910.478-3.4843.442-4.2636.28916.635
117BB_DC7DA8:DT-8DG-7_DD-1.3530.8413.635-4.506-4.78463.5331.0271.0613.649-4.5314.26863.837
14BB_DG-7DG-6:DC6DC7_DD-0.6220.313.863-2.64-4.97431.0231.6650.5643.807-9.2044.88531.517
15BB_DG-6DC-5:DG5DC6_DD0.381-0.2953.3324.288.25236.7-1.534-0.0283.21712.854-6.66737.82
18BB_DG-3DA-2:DT2DC3_DD0.14-0.63.001-7.2621.88535.616-1.2-1.1442.8833.0411.71236.373
111BB_DG1DT2:DA-2DC-1_DD-0.174-1.3383.9422.836.73531.45-3.7980.8973.55812.219-5.13432.266
115BB_DG5DC6:DG-6DC-5_DD0.007-0.4523.6294.03310.21635.46-2.2070.5813.35716.297-6.43337.07
12BB_DT-9DT-8:DA8DA9_DD1.387-0.1913.2541.606-5.80334.8640.549-2.0443.3-9.597-2.65635.365
13BB_DT-8DG-7:DC7DA8_DD0.3650.3953.1494.649.61139.874-0.46-0.0263.17913.795-6.6641.222
17BB_DT-4DG-3:DC3DA4_DD-0.5640.2773.3970.2322.12841.0830.1550.8293.4033.03-0.3341.137
112BB_DT2DC3:DG-3DA-2_DD0.345-0.3853.878-5.286-0.7332.164-0.537-1.6993.782-1.3079.4632.592

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.