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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
RR0005
PDB ID:
1DK1
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
11
B_A19:U50_B
0.279
-0.235
0.472
7.904
-4.569
-5.655
1
19
B_A27:G41_B
-0.909
1.546
-0.212
-11.675
-9.443
-19.335
1
9
B_A52:U16_B
-4.005
-1.675
-0.077
-2.429
4.796
-105.689
1
4
B_C4:G54_B
-0.053
-0.171
0.296
-3.156
-1.766
-2.531
1
8
B_C15:G6_B
-0.2
-0.435
0.014
-14.558
-10.926
-2.506
1
12
B_C20:G49_B
0.454
-0.334
0.394
5.21
-1.696
0.906
1
23
B_C32:G37_B
0.72
-0.573
-0.194
11.626
2.03
1.491
1
1
B_G1:C57_B
0.566
-0.042
-0.442
-0.975
1.425
-6.385
1
2
B_G2:U56_B
-1.993
-0.8
0.261
0.767
-14.823
-1.596
1
3
B_G3:C55_B
-0.034
-0.229
0.152
0.212
-4.418
-4.792
1
5
B_G12:U9_B
-0.743
5.265
0.527
14.49
1.865
104.125
1
6
B_G13:C8_B
0.311
-0.088
-0.387
-8.56
-8.083
6.423
1
7
B_G14:C7_B
0.227
-0.22
-0.175
-15.974
-9.248
4.132
1
10
B_G18:C53_B
0.104
-0.238
-0.182
9.562
1.001
-5.249
1
13
B_G21:C48_B
-0.339
-0.169
-0.036
-0.843
-9.71
0.335
1
14
B_G22:C46_B
-0.871
-0.457
-0.104
-4.837
-8.92
-7.183
1
16
B_G24:C44_B
-0.613
-0.602
-0.086
-1.011
-6.725
0.125
1
17
B_G25:C43_B
-0.721
-0.246
0.145
-1.226
-13.974
-0.288
1
18
B_G26:U42_B
-2.066
-0.467
0.068
-11.046
-15.307
-2.344
1
20
B_G28:G40_B
5.207
1.877
0.376
-11.137
11.584
7.878
1
21
B_G30:U39_B
-3.244
-0.839
-0.614
-8.728
-10.348
0.469
1
22
B_G31:C38_B
0.563
-0.488
-0.15
-3.766
-4.694
-6.634
1
15
B_U23:A45_B
-0.969
-0.569
-0.006
-4.838
-7.923
1.827
1
24
B_U33:G36_B
4.502
-1.872
-1.506
15.688
-8.064
17.609
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.