1DK1: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: RR0005 PDB ID: 1DK1

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	11	B_A19:U50_B	0.279	-0.235	0.472	7.904	-4.569	-5.655
1	19	B_A27:G41_B	-0.909	1.546	-0.212	-11.675	-9.443	-19.335
1	9	B_A52:U16_B	-4.005	-1.675	-0.077	-2.429	4.796	-105.689
1	4	B_C4:G54_B	-0.053	-0.171	0.296	-3.156	-1.766	-2.531
1	8	B_C15:G6_B	-0.2	-0.435	0.014	-14.558	-10.926	-2.506
1	12	B_C20:G49_B	0.454	-0.334	0.394	5.21	-1.696	0.906
1	23	B_C32:G37_B	0.72	-0.573	-0.194	11.626	2.03	1.491
1	1	B_G1:C57_B	0.566	-0.042	-0.442	-0.975	1.425	-6.385
1	2	B_G2:U56_B	-1.993	-0.8	0.261	0.767	-14.823	-1.596
1	3	B_G3:C55_B	-0.034	-0.229	0.152	0.212	-4.418	-4.792
1	5	B_G12:U9_B	-0.743	5.265	0.527	14.49	1.865	104.125
1	6	B_G13:C8_B	0.311	-0.088	-0.387	-8.56	-8.083	6.423
1	7	B_G14:C7_B	0.227	-0.22	-0.175	-15.974	-9.248	4.132
1	10	B_G18:C53_B	0.104	-0.238	-0.182	9.562	1.001	-5.249
1	13	B_G21:C48_B	-0.339	-0.169	-0.036	-0.843	-9.71	0.335
1	14	B_G22:C46_B	-0.871	-0.457	-0.104	-4.837	-8.92	-7.183
1	16	B_G24:C44_B	-0.613	-0.602	-0.086	-1.011	-6.725	0.125
1	17	B_G25:C43_B	-0.721	-0.246	0.145	-1.226	-13.974	-0.288
1	18	B_G26:U42_B	-2.066	-0.467	0.068	-11.046	-15.307	-2.344
1	20	B_G28:G40_B	5.207	1.877	0.376	-11.137	11.584	7.878
1	21	B_G30:U39_B	-3.244	-0.839	-0.614	-8.728	-10.348	0.469
1	22	B_G31:C38_B	0.563	-0.488	-0.15	-3.766	-4.694	-6.634
1	15	B_U23:A45_B	-0.969	-0.569	-0.006	-4.838	-7.923	1.827
1	24	B_U33:G36_B	4.502	-1.872	-1.506	15.688	-8.064	17.609

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.