A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: RR0005  PDB ID: 1DK1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
111B_A19:U50_B0.279-0.2350.4727.904-4.569-5.655
119B_A27:G41_B-0.9091.546-0.212-11.675-9.443-19.335
19B_A52:U16_B-4.005-1.675-0.077-2.4294.796-105.689
14B_C4:G54_B-0.053-0.1710.296-3.156-1.766-2.531
18B_C15:G6_B-0.2-0.4350.014-14.558-10.926-2.506
112B_C20:G49_B0.454-0.3340.3945.21-1.6960.906
123B_C32:G37_B0.72-0.573-0.19411.6262.031.491
11B_G1:C57_B0.566-0.042-0.442-0.9751.425-6.385
12B_G2:U56_B-1.993-0.80.2610.767-14.823-1.596
13B_G3:C55_B-0.034-0.2290.1520.212-4.418-4.792
15B_G12:U9_B-0.7435.2650.52714.491.865104.125
16B_G13:C8_B0.311-0.088-0.387-8.56-8.0836.423
17B_G14:C7_B0.227-0.22-0.175-15.974-9.2484.132
110B_G18:C53_B0.104-0.238-0.1829.5621.001-5.249
113B_G21:C48_B-0.339-0.169-0.036-0.843-9.710.335
114B_G22:C46_B-0.871-0.457-0.104-4.837-8.92-7.183
116B_G24:C44_B-0.613-0.602-0.086-1.011-6.7250.125
117B_G25:C43_B-0.721-0.2460.145-1.226-13.974-0.288
118B_G26:U42_B-2.066-0.4670.068-11.046-15.307-2.344
120B_G28:G40_B5.2071.8770.376-11.13711.5847.878
121B_G30:U39_B-3.244-0.839-0.614-8.728-10.3480.469
122B_G31:C38_B0.563-0.488-0.15-3.766-4.694-6.634
115B_U23:A45_B-0.969-0.569-0.006-4.838-7.9231.827
124B_U33:G36_B4.502-1.872-1.50615.688-8.06417.609

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.