A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
Search for released structures

NDB ID: PDE005  PDB ID: 1DNK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14B_DA304:DT313_C0.002-0.3570.308-9.971-10.894-5.611
16B_DA306:DT311_C1.146-0.0880.47311.731-4.682.119
17B_DC307:DG310_C0.164-0.5340.2315.464-7.053-8.553
11B_DG301:DC316_C-0.257-0.494-0.056-0.85-6.598-3.988
12B_DG302:DC315_C-0.449-0.213-0.146-15.297-18.26-1.327
13B_DT303:DA314_C-0.077-0.0530.29-11.804-12.7298.301
15B_DT305:DA312_C0.244-0.5490.0773.969-2.594-3.946

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.